Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000929

Physical Location & Seq

Genomic Coordinates Forward (+)

34996251 .. 34998992

Gene Structure 2742 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG159100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGGCGCACAGGTTGCTAAGGAATGTGGAGGCGGACGGTTGGGAGCGATCGGACTTCCCCATCATCTGCGAGTCATGCCTCGGCGACAACCCTTACGTTCGCATGACCAAAGCCGATTACGACAAAGAGTGCAAGATCTGCACCCGCCCCTTCACCGTCTTCCGGTGGCGCCCCGGCCGCGACGCCCGCTTCAAGAAGTCCGAGATTTGCCAGACCTGCAGCAAGTTGAAGAACGTCTGCCAAGTCTGCCTCCTCGATCTCGACTACGGCCTCCCCGTCCAGGTCCGCGACACCGCCCTCGCCATCGGCTCCGACGACGCCATTCCCAAGAGCGACGTCAATCGCGAGTTCTTCGCCGAAGAACATGACCGCAAGGCTCGGGCTGGAATTGATTATGAATCGTCGTACGGGAAGGCGAGGCCGAATGACACGATTCTGAAGCTGCAGAGAACGACGCCGTATTACAAGAGGAACCGGGCGCATGTGTGCAGTTTCTATATTCGGGGCGAGTGCACTAGAGGTGCTGAGTGCCCTTACCGGCACGAGATGCCCATCACTGGCGAGTTGTCTCAGCAAAATATCAAAGATCGATACTACGGAGTCAATGATCCTGTGGCAATGAAGCTACTTAACAAGGCTGGAGAGATGCCCTCCCTGGAACCACCAGAGGATGAAAGCATTAGAACCCTGTATGTCGGTGGGATTGATGCAAGAGTCTCTGAGCAGGATTTAAGGGATCAGTTTTATGCTCATGGCGAAATAGAATCTGTTAGGATGGTGCTCCAACGAGCGTGTGCTTTTGTAACATACACAACAAGAGAAGCTGCAGAAAAGGCCGCAGAAGAACTCTCCAATAGGCTGGTAGTGAAGGGTTTGAGGTTGAAGTTAATGTGGGGTAGGCCGCAGGCACCGAAACAGGACTTGGAGGGCACAGATGAGGCTAGGCAACAGGCCGTGGCTCATAGTGGCTTGTTGCCTCGAGCGGTCATATCCCAACAGCAGAGCCAATTACAAGACCAATCTGCACCACCAGTGCAGCACTACTACAACATCCCACCTCCAGCTTCGCAGGAGACAACGTATTATCCATCCATGGATCCTCAAAGAATGGGTGCAGTTGTTCGATCGCAGGATGGAGCTCCAAGTGGCCCCAGAGGGTCAGGTGAGAACAGTTCTGGTTCTGAGAGGCAGCATTATGCTTTTCAAAGTATGGCTCCTCCACATGGTCAATATAATCAGCAGTTTTATCCTCAACCATACAGCGGTTATATGCCTCCACCACCTTATCAGCAATACCCTCCGCAATATCATGCTGCAGTGCCACCACCATCCTTGCCAATGAATCAACATTACCAGCATTCTGCAACACCAGGGACTGCACCCTCAGGTTCTACATCGTCTGTACCCGCACAATCAAATTCTGGACCTTCCGAGTCTGGCTCTAGCTCTGGGCCTGTGCCAACAGGGTCATCACAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000974 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0065003 GO:0071006 GO:0071007 GO:0071012 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 Torus

Protein Analysis

493

Amino Acids

55.07

Weight (kDa)

6.86

Isoelectric Point (pI)

67.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STL11_N	PF21369	20 - 109	8.4e-30	STL11, N-terminal
Torus	PF16131	150 - 193	1.7e-06	Torus domain
zf-CCCH_RBM22	PF25584	157 - 183	1.7e-11	RBM22 CCCH zinc finger domain
RRM_1	PF00076	230 - 288	6.4e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07360 AT2G29580 AT5G04210 AT5G07060 AT5G07060
fragaria_vesca	FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g36530 FvH4_4g36530 FvH4_7g07370
malus_domestica	MD01G1110000.v1.1 MD07G1175800.v1.1 MD16G1006600.v1.1
prunus_persica	Prupe.2G214800_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1
pyrus_communis	pycom01g13690 pycom07g17000 pycom16g00630
rosa_chinensis	RchiOBHm_Chr1g0337351 RchiOBHm_Chr4g0408701 RchiOBHm_Chr4g0446281
rosa_laevigata	RLG00000005673 RLG00000008640 RLG00000029280 RLG00000029283
rosa_multiflora	Rmu_co8341103.1_g000001 Rmu_co8350441.1_g000001 Rmu_co8408813.1_g000001 Rmu_co8519167.1_g000003 Rmu_co8522047.1_g000002 Rmu_sc0002266.1_g000007 Rmu_sc0003060.1_g000002 Rmu_sc0005878.1_g000023 Rmu_sc0021927.1_g000001
rosa_roxburghii	Rroxscaffold_4G00314450 Rroxscaffold_4G00314490 Rroxscaffold_5G00353060 Rroxscaffold_5G00386720
rosa_rugosa	Rorug01G0134600.1 Rorug01G0134800.1 Rorug04G0086900 Rorug04G0369600 Rorug04G0369600
rosa_samantha	Rh1AG153600 Rh1BG122900 Rh1BG123100 Rh1CG144600 Rh1DG161300 Rh1DG161500 Rh4AG431500 Rh4BG148400 Rh4BG440900 Rh4CG159100 Rh4CG458200 Rh4DG144000 Rh4DG439400
rosa_wichuraiana	Rw1G012580 Rw4G012370 Rw4G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	339
Acc36I	ACCTGC	1 cut(s)	224
AccB1I	GGYRCC	2 cut(s)	168, 907
AccBSI	CCGCTC	1 cut(s)	983
AccII	CGCG	3 cut(s)	180, 288, 345
AclWI	GGATC	4 cut(s)	602, 744, 1091, 1104
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	1417
AcuI	CTGAAG	1 cut(s)	458
AcyI	GRCGYC	5 cut(s)	169, 183, 318, 336, 455
AfaI	GTAC	2 cut(s)	407, 1404
AfiI	CCNNNNNNNGG	5 cut(s)	162, 280, 557, 1223, 1262
AgsI	TTSAA	4 cut(s)	193, 229, 883, 1205
AjnI	CCWGG	3 cut(s)	279, 654, 1369
AjuI	GAANNNNNNNTTGG	2 cut(s)	905, 937
AleI	CACNNNNGTG	1 cut(s)	1477
AluBI	AGCT	6 cut(s)	442, 625, 824, 1064, 1139, 1446
AluI	AGCT	6 cut(s)	442, 625, 824, 1064, 1139, 1446
Alw21I	GWGCWC	3 cut(s)	515, 783, 1141
Alw26I	GTCTC	3 cut(s)	573, 721, 1067
Alw44I	GTGCAC	1 cut(s)	511
AlwI	GGATC	4 cut(s)	602, 744, 1091, 1104
AlwNI	CAGNNNCTG	1 cut(s)	1376
Ama87I	CYCGRG	2 cut(s)	378, 978
AoxI	GGCC	8 cut(s)	175, 268, 419, 834, 899, 951, 1147, 1451
ApaLI	GTGCAC	1 cut(s)	511
ApeKI	GCWGC	6 cut(s)	219, 442, 824, 1036, 1189, 1313
ApoI	RAATTY	1 cut(s)	1417
AspLEI	GCGC	3 cut(s)	7, 171, 481
AspS9I	GGNCC	4 cut(s)	283, 1148, 1424, 1451
AsuC2I	CCSGG	2 cut(s)	174, 476
AsuHPI	GGTGA	2 cut(s)	145, 1175
AvaI	CYCGRG	2 cut(s)	378, 978
AvaII	GGWCC	2 cut(s)	283, 1424
AxyI	CCTNAGG	1 cut(s)	1384
BaeGI	GKGCMC	3 cut(s)	515, 533, 932
BamHI	GGATCC	1 cut(s)	1096
BanI	GGYRCC	2 cut(s)	168, 907
BanII	GRGCYC	1 cut(s)	1141
BauI	CACGAG	1 cut(s)	542
BbsI	GAAGAC	1 cut(s)	151
Bbv12I	GWGCWC	3 cut(s)	515, 783, 1141
BbvI	GCAGC	6 cut(s)	231, 429, 811, 1048, 1201, 1300
BccI	CCATC	7 cut(s)	68, 311, 560, 769, 1096, 1127, 1336
BceAI	ACGGC	3 cut(s)	283, 442, 938
BciT130I	CCWGG	3 cut(s)	281, 656, 1371
BcnI	CCSGG	2 cut(s)	174, 476
BcoDI	GTCTC	3 cut(s)	573, 721, 1067
BfaI	CTAG	3 cut(s)	516, 942, 1443
BfmI	CTRYAG	4 cut(s)	217, 443, 825, 1314
BfoI	RGCGCY	1 cut(s)	172
BfuAI	ACCTGC	1 cut(s)	224
BglII	AGATCT	1 cut(s)	135
BisI	GCNGC	9 cut(s)	178, 220, 443, 825, 837, 902, 1037, 1190, 1314
BlsI	GCNGC	9 cut(s)	179, 221, 444, 826, 838, 903, 1038, 1191, 1315
Bme1390I	CCNGG	5 cut(s)	174, 281, 476, 656, 1371
Bme18I	GGWCC	2 cut(s)	283, 1424
BmeT110I	CYCGRG	2 cut(s)	378, 978
BmgT120I	GGNCC	4 cut(s)	283, 1148, 1424, 1451
BmiI	GGNNCC	8 cut(s)	170, 310, 473, 660, 909, 1098, 1150, 1215
BmrFI	CCNGG	5 cut(s)	174, 281, 476, 656, 1371
BmsI	GCATC	3 cut(s)	537, 636, 697
BpiI	GAAGAC	1 cut(s)	151
BplI	GAGNNNNNCTC	4 cut(s)	635, 667, 1424, 1456
BpmI	CTGGAG	2 cut(s)	660, 1044
Bpu10I	CCTNAGC	1 cut(s)	17
BpuMI	CCSGG	2 cut(s)	174, 476
Bsa29I	ATCGAT	1 cut(s)	589
BsaBI	GATNNNNATC	1 cut(s)	551
BsaHI	GRCGYC	5 cut(s)	169, 183, 318, 336, 455
BsaJI	CCNNGG	6 cut(s)	79, 172, 654, 954, 1092, 1370
BsaWI	WCCGGW	1 cut(s)	162
BsaXI	ACNNNNNCTCC	2 cut(s)	1064, 1094
Bsc4I	CCNNNNNNNGG	5 cut(s)	162, 280, 557, 1223, 1262
Bse118I	RCCGGY	1 cut(s)	537
Bse1I	ACTGG	2 cut(s)	562, 1031
Bse21I	CCTNAGG	1 cut(s)	1384
Bse3DI	GCAATG	1 cut(s)	624
Bse8I	GATNNNNATC	1 cut(s)	551
BseBI	CCWGG	3 cut(s)	281, 656, 1371
BseCI	ATCGAT	1 cut(s)	589
BseDI	CCNNGG	6 cut(s)	79, 172, 654, 954, 1092, 1370
BseGI	GGATG	6 cut(s)	676, 780, 1050, 1088, 1138, 1328
BseJI	GATNNNNATC	1 cut(s)	551
BseLI	CCNNNNNNNGG	5 cut(s)	162, 280, 557, 1223, 1262
BseMI	GCAATG	1 cut(s)	624
BseMII	CTCAG	5 cut(s)	516, 584, 711, 1173, 1398
BseNI	ACTGG	2 cut(s)	562, 1031
BseRI	GAGGAG	2 cut(s)	242, 1206
BseSI	GKGCMC	3 cut(s)	515, 533, 932
BseX3I	CGGCCG	1 cut(s)	175
BseXI	GCAGC	6 cut(s)	231, 429, 811, 1048, 1201, 1300
BsgI	GTGCAG	6 cut(s)	124, 508, 1008, 1055, 1134, 1362
Bsh1236I	CGCG	3 cut(s)	180, 288, 345
Bsh1285I	CGRYCG	3 cut(s)	50, 178, 1127
BshFI	GGCC	8 cut(s)	177, 270, 421, 836, 901, 953, 1149, 1453
BshNI	GGYRCC	2 cut(s)	168, 907
BshVI	ATCGAT	1 cut(s)	589
BsiEI	CGRYCG	3 cut(s)	50, 178, 1127
BsiHKAI	GWGCWC	3 cut(s)	515, 783, 1141
BsiHKCI	CYCGRG	2 cut(s)	378, 978
BsiSI	CCGG	4 cut(s)	163, 174, 475, 538
BsiWI	CGTACG	1 cut(s)	405
BslFI	GGGAC	1 cut(s)	1387
BslI	CCNNNNNNNGG	5 cut(s)	162, 280, 557, 1223, 1262
BsmAI	GTCTC	3 cut(s)	573, 721, 1067
BsmFI	GGGAC	1 cut(s)	1387
BsmI	GAATGC	1 cut(s)	1357
BsnI	GGCC	8 cut(s)	177, 270, 421, 836, 901, 953, 1149, 1453
BsoBI	CYCGRG	2 cut(s)	378, 978
Bsp1286I	GDGCHC	5 cut(s)	515, 533, 783, 932, 1141
Bsp143I	GATC	8 cut(s)	47, 135, 256, 586, 607, 736, 1096, 1124
Bsp19I	CCATGG	1 cut(s)	1092
Bsp68I	TCGCGA	1 cut(s)	345
BspANI	GGCC	8 cut(s)	177, 270, 421, 836, 901, 953, 1149, 1453
BspCNI	CTCAG	5 cut(s)	517, 583, 712, 1174, 1397
BspDI	ATCGAT	1 cut(s)	589
BspFNI	CGCG	3 cut(s)	180, 288, 345
BspLI	GGNNCC	8 cut(s)	170, 310, 473, 660, 909, 1098, 1150, 1215
BspMAI	CTGCAG	4 cut(s)	221, 447, 829, 1318
BspMI	ACCTGC	1 cut(s)	224
BspPI	GGATC	4 cut(s)	602, 744, 1091, 1104
BspT107I	GGYRCC	2 cut(s)	168, 907
BsrBI	CCGCTC	1 cut(s)	983
BsrDI	GCAATG	1 cut(s)	624
BsrFI	RCCGGY	1 cut(s)	537
BsrI	ACTGG	2 cut(s)	562, 1031
BssAI	RCCGGY	1 cut(s)	537
BssECI	CCNNGG	6 cut(s)	79, 172, 654, 954, 1092, 1370
BssMI	GATC	8 cut(s)	47, 135, 256, 586, 607, 736, 1096, 1124
BssNI	GRCGYC	5 cut(s)	169, 183, 318, 336, 455
BssSI	CACGAG	1 cut(s)	542
BssT1I	CCWWGG	1 cut(s)	1092
Bst2BI	CACGAG	1 cut(s)	542
Bst2UI	CCWGG	3 cut(s)	281, 656, 1371
Bst4CI	ACNGT	3 cut(s)	38, 157, 1172
BstACI	GRCGYC	5 cut(s)	169, 183, 318, 336, 455
BstAPI	GCANNNNNTGC	3 cut(s)	13, 138, 547
BstC8I	GCNNGC	2 cut(s)	187, 906
BstDEI	CTNAG	6 cut(s)	17, 525, 570, 720, 1182, 1384
BstDSI	CCRYGG	2 cut(s)	954, 1092
BstF5I	GGATG	6 cut(s)	676, 780, 1050, 1088, 1138, 1328
BstFNI	CGCG	3 cut(s)	180, 288, 345
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	3 cut(s)	7, 171, 481
BstKTI	GATC	8 cut(s)	50, 138, 259, 589, 610, 739, 1099, 1127
BstMAI	GTCTC	3 cut(s)	573, 721, 1067
BstMBI	GATC	8 cut(s)	47, 135, 256, 586, 607, 736, 1096, 1124
BstMCI	CGRYCG	3 cut(s)	50, 178, 1127
BstMWI	GCNNNNNNNGC	9 cut(s)	13, 75, 138, 177, 186, 216, 246, 547, 833
BstNI	CCWGG	3 cut(s)	281, 656, 1371
BstNSI	RCATGY	1 cut(s)	485
BstSCI	CCNGG	5 cut(s)	172, 279, 474, 654, 1369
BstSFI	CTRYAG	4 cut(s)	217, 443, 825, 1314
BstSLI	GKGCMC	3 cut(s)	515, 533, 932
BstUI	CGCG	3 cut(s)	180, 288, 345
BstV1I	GCAGC	6 cut(s)	231, 429, 811, 1048, 1201, 1300
BstV2I	GAAGAC	1 cut(s)	151
BstX2I	RGATCY	2 cut(s)	135, 1096
BstXI	CCANNNNNNTGG	1 cut(s)	859
BstYI	RGATCY	2 cut(s)	135, 1096
BstZI	CGGCCG	1 cut(s)	175
Bsu15I	ATCGAT	1 cut(s)	589
Bsu36I	CCTNAGG	1 cut(s)	1384
BsuRI	GGCC	8 cut(s)	177, 270, 421, 836, 901, 953, 1149, 1453
BsuTUI	ATCGAT	1 cut(s)	589
BtgI	CCRYGG	2 cut(s)	954, 1092
BtsCI	GGATG	6 cut(s)	676, 780, 1050, 1088, 1138, 1328
BtsI	GCAGTG	1 cut(s)	1323
BtsIMutI	CAGTG	3 cut(s)	555, 1038, 1323
BtuMI	TCGCGA	1 cut(s)	345
BveI	ACCTGC	1 cut(s)	224
Cac8I	GCNNGC	2 cut(s)	187, 906
CaiI	CAGNNNCTG	1 cut(s)	1376
CfoI	GCGC	3 cut(s)	7, 171, 481
Cfr10I	RCCGGY	1 cut(s)	537
Cfr13I	GGNCC	4 cut(s)	283, 1148, 1424, 1451
ClaI	ATCGAT	1 cut(s)	589
CseI	GACGC	3 cut(s)	191, 326, 463
Csp6I	GTAC	2 cut(s)	406, 1403
CspCI	CAANNNNNGTGG	2 cut(s)	1314, 1349
CviAII	CATG	8 cut(s)	75, 103, 365, 482, 752, 1093, 1223, 1310
CviQI	GTAC	2 cut(s)	406, 1403
DdeI	CTNAG	6 cut(s)	17, 525, 570, 720, 1182, 1384
DinI	GGCGCC	1 cut(s)	170
DpnI	GATC	8 cut(s)	49, 137, 258, 588, 609, 738, 1098, 1126
DpnII	GATC	8 cut(s)	47, 135, 256, 586, 607, 736, 1096, 1124
EaeI	YGGCCR	1 cut(s)	175
EagI	CGGCCG	1 cut(s)	175
EciI	GGCGGA	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	1139
EclXI	CGGCCG	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	1092
Eco24I	GRGCYC	1 cut(s)	1141
Eco47I	GGWCC	2 cut(s)	283, 1424
Eco52I	CGGCCG	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	1139
Eco57I	CTGAAG	1 cut(s)	458
Eco81I	CCTNAGG	1 cut(s)	1384
Eco88I	CYCGRG	2 cut(s)	378, 978
EcoICRI	GAGCTC	1 cut(s)	1139
EcoRII	CCWGG	3 cut(s)	279, 654, 1369
EcoT14I	CCWWGG	1 cut(s)	1092
EcoT38I	GRGCYC	1 cut(s)	1141
EgeI	GGCGCC	1 cut(s)	170
EheI	GGCGCC	1 cut(s)	170
ErhI	CCWWGG	1 cut(s)	1092
FaeI	CATG	8 cut(s)	78, 106, 368, 485, 755, 1096, 1226, 1313
FaqI	GGGAC	1 cut(s)	1387
FatI	CATG	8 cut(s)	74, 102, 364, 481, 751, 1092, 1222, 1309
FauI	CCCGC	3 cut(s)	152, 194, 1414
Fnu4HI	GCNGC	9 cut(s)	178, 220, 443, 825, 837, 902, 1037, 1190, 1314
FokI	GGATG	6 cut(s)	683, 787, 1037, 1075, 1145, 1315
FriOI	GRGCYC	1 cut(s)	1141
Fsp4HI	GCNGC	9 cut(s)	178, 220, 443, 825, 837, 902, 1037, 1190, 1314
FspBI	CTAG	3 cut(s)	516, 942, 1443
GlaI	GCGC	3 cut(s)	6, 170, 480
GluI	GCNGC	9 cut(s)	178, 220, 443, 825, 837, 902, 1037, 1190, 1314
GsuI	CTGGAG	2 cut(s)	660, 1044
HaeII	RGCGCY	1 cut(s)	172
HaeIII	GGCC	8 cut(s)	177, 270, 421, 836, 901, 953, 1149, 1453
HapII	CCGG	4 cut(s)	163, 174, 475, 538
HgaI	GACGC	3 cut(s)	191, 326, 463
HhaI	GCGC	3 cut(s)	7, 171, 481
Hin1I	GRCGYC	5 cut(s)	169, 183, 318, 336, 455
Hin1II	CATG	8 cut(s)	78, 106, 368, 485, 755, 1096, 1226, 1313
Hin6I	GCGC	3 cut(s)	5, 169, 479
HinP1I	GCGC	3 cut(s)	5, 169, 479
HinfI	GANTC	8 cut(s)	71, 398, 433, 600, 714, 764, 1342, 1433
HpaII	CCGG	4 cut(s)	163, 174, 475, 538
HphI	GGTGA	2 cut(s)	145, 1175
Hpy166II	GTNNAC	1 cut(s)	513
Hpy188I	TCNGA	7 cut(s)	52, 202, 313, 438, 721, 1183, 1432
Hpy188III	TCNNGA	4 cut(s)	193, 260, 344, 1422
Hpy8I	GTNNAC	1 cut(s)	513
Hpy99I	CGWCG	6 cut(s)	185, 317, 320, 338, 406, 457
HpyAV	CCTTC	4 cut(s)	160, 406, 862, 1437
HpyCH4III	ACNGT	3 cut(s)	38, 157, 1172
HpyCH4IV	ACGT	4 cut(s)	96, 234, 336, 1079
HpyF10VI	GCNNNNNNNGC	9 cut(s)	13, 75, 138, 177, 186, 216, 246, 547, 833
HpyF3I	CTNAG	6 cut(s)	17, 525, 570, 720, 1182, 1384
HpySE526I	ACGT	4 cut(s)	96, 234, 336, 1079
Hsp92I	GRCGYC	5 cut(s)	169, 183, 318, 336, 455
Hsp92II	CATG	8 cut(s)	78, 106, 368, 485, 755, 1096, 1226, 1313
HspAI	GCGC	3 cut(s)	5, 169, 479
KasI	GGCGCC	1 cut(s)	168
Kzo9I	GATC	8 cut(s)	47, 135, 256, 586, 607, 736, 1096, 1124
LmnI	GCTCC	6 cut(s)	43, 314, 786, 1136, 1144, 1219
Lsp1109I	GCAGC	6 cut(s)	231, 429, 811, 1048, 1201, 1300
LweI	GCATC	3 cut(s)	537, 636, 697
MaeI	CTAG	3 cut(s)	516, 942, 1443
MaeII	ACGT	4 cut(s)	96, 234, 336, 1079
MaeIII	GTNAC	1 cut(s)	802
MalI	GATC	8 cut(s)	49, 137, 258, 588, 609, 738, 1098, 1126
MbiI	CCGCTC	1 cut(s)	983
MboI	GATC	8 cut(s)	47, 135, 256, 586, 607, 736, 1096, 1124
MboII	GAAGA	5 cut(s)	151, 241, 343, 371, 854
MflI	RGATCY	2 cut(s)	135, 1096
MhlI	GDGCHC	5 cut(s)	515, 533, 783, 932, 1141
MluCI	AATT	3 cut(s)	387, 1007, 1417
Mly113I	GGCGCC	1 cut(s)	169
MlyI	GAGTC	4 cut(s)	80, 609, 723, 1442
MmeI	TCCRAC	2 cut(s)	336, 808
MseI	TTAA	3 cut(s)	630, 731, 887
MslI	CAYNNNNRTG	1 cut(s)	1477
MspA1I	CMGCKG	1 cut(s)	1263
MspI	CCGG	4 cut(s)	163, 174, 475, 538
MspR9I	CCNGG	5 cut(s)	174, 281, 476, 656, 1371
Mva1269I	GAATGC	1 cut(s)	1357
MvaI	CCWGG	3 cut(s)	281, 656, 1371
MvnI	CGCG	3 cut(s)	180, 288, 345
MwoI	GCNNNNNNNGC	9 cut(s)	13, 75, 138, 177, 186, 216, 246, 547, 833
NarI	GGCGCC	1 cut(s)	169
NciI	CCSGG	2 cut(s)	174, 476
NcoI	CCATGG	1 cut(s)	1092
NdeII	GATC	8 cut(s)	47, 135, 256, 586, 607, 736, 1096, 1124
NlaIII	CATG	8 cut(s)	78, 106, 368, 485, 755, 1096, 1226, 1313
NlaIV	GGNNCC	8 cut(s)	170, 310, 473, 660, 909, 1098, 1150, 1215
NmeAIII	GCCGAG	1 cut(s)	60
NruI	TCGCGA	1 cut(s)	345
NspI	RCATGY	1 cut(s)	485
OliI	CACNNNNGTG	1 cut(s)	1477
PaeR7I	CTCGAG	1 cut(s)	978
PcsI	WCGNNNNNNNCGW	3 cut(s)	273, 312, 342
PctI	GAATGC	1 cut(s)	1357
PfeI	GAWTC	4 cut(s)	398, 433, 764, 1342
Pfl23II	CGTACG	1 cut(s)	405
PkrI	GCNGC	9 cut(s)	179, 221, 444, 826, 838, 903, 1038, 1191, 1315
Ple19I	CGATCG	2 cut(s)	50, 1127
PleI	GAGTC	4 cut(s)	79, 608, 722, 1441
PluTI	GGCGCC	1 cut(s)	172
PpsI	GAGTC	4 cut(s)	79, 608, 722, 1441
Psp124BI	GAGCTC	1 cut(s)	1141
Psp6I	CCWGG	3 cut(s)	279, 654, 1369
PspGI	CCWGG	3 cut(s)	279, 654, 1369
PspLI	CGTACG	1 cut(s)	405
PspN4I	GGNNCC	8 cut(s)	170, 310, 473, 660, 909, 1098, 1150, 1215
PspPI	GGNCC	4 cut(s)	283, 1148, 1424, 1451
PspXI	VCTCGAGB	1 cut(s)	978
PstI	CTGCAG	4 cut(s)	221, 447, 829, 1318
PstNI	CAGNNNCTG	1 cut(s)	1376
PsuI	RGATCY	2 cut(s)	135, 1096
PvuI	CGATCG	2 cut(s)	50, 1127
RruI	TCGCGA	1 cut(s)	345
RsaI	GTAC	2 cut(s)	407, 1404
RsaNI	GTAC	2 cut(s)	406, 1403
RseI	CAYNNNNRTG	1 cut(s)	1477
SacI	GAGCTC	1 cut(s)	1141
SaqAI	TTAA	3 cut(s)	630, 731, 887
SatI	GCNGC	9 cut(s)	178, 220, 443, 825, 837, 902, 1037, 1190, 1314
Sau3AI	GATC	8 cut(s)	47, 135, 256, 586, 607, 736, 1096, 1124
Sau96I	GGNCC	4 cut(s)	283, 1148, 1424, 1451
SchI	GAGTC	4 cut(s)	80, 609, 723, 1442
ScrFI	CCNGG	5 cut(s)	174, 281, 476, 656, 1371
SduI	GDGCHC	5 cut(s)	515, 533, 783, 932, 1141
SfaNI	GCATC	3 cut(s)	537, 636, 697
SfcI	CTRYAG	4 cut(s)	217, 443, 825, 1314
SfoI	GGCGCC	1 cut(s)	170
Sfr274I	CTCGAG	1 cut(s)	978
SinI	GGWCC	2 cut(s)	283, 1424
SlaI	CTCGAG	1 cut(s)	978
SmiMI	CAYNNNNRTG	1 cut(s)	1477
SmlI	CTYRAG	1 cut(s)	978
SmoI	CTYRAG	1 cut(s)	978
Sse9I	AATT	3 cut(s)	387, 1007, 1417
SspDI	GGCGCC	1 cut(s)	168
SspMI	CTAG	3 cut(s)	516, 942, 1443
SstI	GAGCTC	1 cut(s)	1141
StyD4I	CCNGG	5 cut(s)	172, 279, 474, 654, 1369
StyI	CCWWGG	1 cut(s)	1092
TaaI	ACNGT	3 cut(s)	38, 157, 1172
TaiI	ACGT	4 cut(s)	99, 237, 339, 1082
TaqI	TCGA	5 cut(s)	255, 261, 589, 979, 1123
TasI	AATT	3 cut(s)	387, 1007, 1417
TauI	GCSGC	3 cut(s)	180, 839, 904
TfiI	GAWTC	4 cut(s)	398, 433, 764, 1342
Tru1I	TTAA	3 cut(s)	630, 731, 887
Tru9I	TTAA	3 cut(s)	630, 731, 887
TscAI	CASTG	3 cut(s)	562, 1038, 1323
TseI	GCWGC	6 cut(s)	219, 442, 824, 1036, 1189, 1313
TspDTI	ATGAA	4 cut(s)	411, 635, 687, 1355
TspGWI	ACGGA	1 cut(s)	612
TspRI	CASTG	3 cut(s)	562, 1038, 1323
VneI	GTGCAC	1 cut(s)	511
VpaK11BI	GGWCC	2 cut(s)	283, 1424
XapI	RAATTY	1 cut(s)	1417
XceI	RCATGY	1 cut(s)	485
XhoI	CTCGAG	1 cut(s)	978
XspI	CTAG	3 cut(s)	516, 942, 1443
ZraI	GACGTC	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.