Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004301

Physical Location & Seq

Genomic Coordinates Reverse (-)

1565447 .. 1566391

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G05280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCTAGATTTTTACTTGCGACGCAAGCTACCCCGACTATTTCAGCTACTGATGCAAATCCTAGAACCTTAGGAGACTCTGTCAGCAACAACAAGAATATAGCTAGCATGGATACACACATGGTGATCATACTAGCCGCTCTTCTATGCGCCTTGATCTGTGCTCTTGGCATCAATTCGGTCTTGCGCTGTGTCTTACGCTGCACGAGAAGGTTCACTCCCAACGAAGATCCAGTTGACACCAATGCAAACGTAGCAAAGGGGATCAAGAAACGGGCGTTGAAGGTTATTCCGGTTGATTCATACAGTCCTGAGCTTAAGATGAAAGCCACGGAGTGTTTGATCTGTTTAGGAGATTTTGTTGAAGGAGAGACAGTTAGGGTTTTGCCCAAATGTAACCATGGCTTCCACGTCAAGTGCATCGACACTTGGTTGCTGTCACATTCCTCTTGCCCCACTTGCAGACAATCACTCCTCGAACATCAGACTCCAGCAAATGGTTCCCGGCGGGGTGATGACGTGGCAACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009555 GO:0009791 GO:0009889 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010498 GO:0010565 GO:0010817 GO:0016567 GO:0016740 GO:0019216 GO:0019217 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022414 GO:0030163 GO:0031323 GO:0031326 GO:0032350 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0036211 GO:0042304 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0046885 GO:0046890 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0061458 GO:0061630 GO:0061659 GO:0062012 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0080090 GO:0080140 GO:0080141 GO:0090567 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

176

Amino Acids

19.12

Weight (kDa)

8.56

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	112 - 155	5.1e-15	Ring finger domain
zf-RING_11	PF17123	112 - 141	2.2e-12	RING-like zinc finger
zf-C3HC4_2	PF13923	112 - 154	4.3e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	113 - 154	9.5e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	125 - 155	1.3e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05280
fragaria_vesca	FvH4_1g08250
malus_domestica	MD01G1126200.v1.1 MD02G1086800.v1.1 MD07G1195700.v1.1 MD07G1195800.v1.1 MD07G1196000.v1.1 MD07G1196100.v1.1 MD15G1214000.v1.1
prunus_persica	Prupe.2G233100_v2.0.a1 Prupe.3G043300_v2.0.a1 Prupe.7G203000_v2.0.a1
pyrus_communis	pycom01g15190 pycom09g10280 pycom15g19020
rosa_chinensis	RchiOBHm_Chr2g0094301 RchiOBHm_Chr2g0144911
rosa_laevigata	RLG00000016475 RLG00000020118
rosa_multiflora	Rmu_sc0002354.1_g000011 Rmu_sc0003819.1_g000026
rosa_roxburghii	Rroxscaffold_2G00147280
rosa_rugosa	Rorug02G0042800
rosa_samantha	Rh2AG090600 Rh2AG442000 Rh2BG090500 Rh2BG452600 Rh2CG093000 Rh2CG429300 Rh2DG089500 Rh2DG462500
rosa_wichuraiana	Rw2G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	497
AccBSI	CCGCTC	1 cut(s)	140
AciI	CCGC	2 cut(s)	138, 508
AclWI	GGATC	2 cut(s)	224, 272
AdeI	CACNNNGTG	2 cut(s)	124, 336
AfiI	CCNNNNNNNGG	1 cut(s)	497
AflII	CTTAAG	1 cut(s)	317
AgsI	TTSAA	2 cut(s)	283, 365
AjiI	CACGTC	2 cut(s)	412, 520
AluBI	AGCT	4 cut(s)	29, 47, 104, 316
AluI	AGCT	4 cut(s)	29, 47, 104, 316
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	2 cut(s)	69, 365
AlwI	GGATC	2 cut(s)	224, 272
AlwNI	CAGNNNCTG	1 cut(s)	50
ApeKI	GCWGC	1 cut(s)	201
AspLEI	GCGC	2 cut(s)	152, 189
AsuC2I	CCSGG	1 cut(s)	505
AsuHPI	GGTGA	2 cut(s)	136, 524
AsuNHI	GCTAGC	1 cut(s)	104
AxyI	CCTNAGG	1 cut(s)	70
BauI	CACGAG	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	188
BciVI	GTATCC	1 cut(s)	106
BclI	TGATCA	1 cut(s)	126
BcnI	CCSGG	1 cut(s)	505
BcoDI	GTCTC	2 cut(s)	69, 365
BfaI	CTAG	4 cut(s)	6, 63, 105, 134
BfrI	CTTAAG	1 cut(s)	317
BfuI	GTATCC	1 cut(s)	106
BisI	GCNGC	2 cut(s)	138, 202
BlsI	GCNGC	2 cut(s)	139, 203
Bme1390I	CCNGG	1 cut(s)	505
BmgBI	CACGTC	2 cut(s)	412, 520
BmiI	GGNNCC	1 cut(s)	502
BmrFI	CCNGG	1 cut(s)	505
BmsI	GCATC	3 cut(s)	43, 180, 429
BmtI	GCTAGC	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	474
Bpu10I	CCTNAGC	1 cut(s)	312
BpuMI	CCSGG	1 cut(s)	505
BsaBI	GATNNNNATC	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	330, 400
BsaWI	WCCGGW	1 cut(s)	292
BsaXI	ACNNNNNCTCC	8 cut(s)	66, 96, 345, 360, 375, 390, 456, 486
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse1I	ACTGG	1 cut(s)	233
Bse21I	CCTNAGG	1 cut(s)	70
Bse8I	GATNNNNATC	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	330, 400
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	233
BseRI	GAGGAG	1 cut(s)	464
BseXI	GCAGC	1 cut(s)	188
BsgI	GTGCAG	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	166
BsiSI	CCGG	2 cut(s)	293, 505
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	2 cut(s)	69, 365
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	5 cut(s)	126, 156, 229, 264, 342
Bsp19I	CCATGG	1 cut(s)	400
BspACI	CCGC	2 cut(s)	138, 508
BspCNI	CTCAG	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	502
BspOI	GCTAGC	1 cut(s)	108
BspPI	GGATC	2 cut(s)	224, 272
BspQI	GCTCTTC	1 cut(s)	147
BspTI	CTTAAG	1 cut(s)	317
BsrBI	CCGCTC	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	330, 400
BssMI	GATC	5 cut(s)	126, 156, 229, 264, 342
BssSI	CACGAG	1 cut(s)	205
BssT1I	CCWWGG	1 cut(s)	400
Bst2BI	CACGAG	1 cut(s)	205
Bst4CI	ACNGT	2 cut(s)	308, 376
Bst6I	CTCTTC	1 cut(s)	147
BstAFI	CTTAAG	1 cut(s)	317
BstC8I	GCNNGC	2 cut(s)	27, 106
BstDEI	CTNAG	2 cut(s)	70, 312
BstDSI	CCRYGG	2 cut(s)	330, 400
BstHHI	GCGC	2 cut(s)	152, 189
BstKTI	GATC	5 cut(s)	129, 159, 232, 267, 345
BstMAI	GTCTC	2 cut(s)	69, 365
BstMBI	GATC	5 cut(s)	126, 156, 229, 264, 342
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 53, 254, 459
BstSCI	CCNGG	1 cut(s)	503
BstV1I	GCAGC	1 cut(s)	188
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
Bsu36I	CCTNAGG	1 cut(s)	70
BsuI	GTATCC	1 cut(s)	106
BtgI	CCRYGG	2 cut(s)	330, 400
BtrI	CACGTC	2 cut(s)	412, 520
Cac8I	GCNNGC	2 cut(s)	27, 106
CaiI	CAGNNNCTG	1 cut(s)	50
CfoI	GCGC	2 cut(s)	152, 189
CseI	GACGC	1 cut(s)	31
CviAII	CATG	3 cut(s)	109, 121, 401
CviJI	RGCY	8 cut(s)	5, 29, 47, 104, 137, 316, 329, 405
CviKI_1	RGCY	8 cut(s)	5, 29, 47, 104, 137, 316, 329, 405
DdeI	CTNAG	2 cut(s)	70, 312
DpnI	GATC	5 cut(s)	128, 158, 231, 266, 344
DpnII	GATC	5 cut(s)	126, 156, 229, 264, 342
DraIII	CACNNNGTG	2 cut(s)	124, 336
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	400
Eco81I	CCTNAGG	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	400
FaeI	CATG	3 cut(s)	112, 124, 404
FaiI	YATR	7 cut(s)	101, 110, 122, 131, 148, 304, 402
FatI	CATG	3 cut(s)	108, 120, 400
FauI	CCCGC	1 cut(s)	501
FbaI	TGATCA	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	138, 202
Fsp4HI	GCNGC	2 cut(s)	138, 202
FspBI	CTAG	4 cut(s)	6, 63, 105, 134
GlaI	GCGC	2 cut(s)	151, 188
GluI	GCNGC	2 cut(s)	138, 202
GsuI	CTGGAG	1 cut(s)	474
HapII	CCGG	2 cut(s)	293, 505
HgaI	GACGC	1 cut(s)	31
HhaI	GCGC	2 cut(s)	152, 189
Hin1II	CATG	3 cut(s)	112, 124, 404
Hin6I	GCGC	2 cut(s)	150, 187
HinP1I	GCGC	2 cut(s)	150, 187
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	3 cut(s)	77, 299, 487
HpaII	CCGG	2 cut(s)	293, 505
HphI	GGTGA	2 cut(s)	136, 524
Hpy166II	GTNNAC	2 cut(s)	216, 238
Hpy188I	TCNGA	1 cut(s)	486
Hpy188III	TCNNGA	2 cut(s)	268, 311
Hpy8I	GTNNAC	2 cut(s)	216, 238
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	3 cut(s)	204, 277, 359
HpyCH4III	ACNGT	2 cut(s)	308, 376
HpyCH4IV	ACGT	4 cut(s)	252, 411, 519, 527
HpyCH4V	TGCA	5 cut(s)	56, 204, 248, 420, 462
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 53, 254, 459
HpyF3I	CTNAG	2 cut(s)	70, 312
HpySE526I	ACGT	4 cut(s)	252, 411, 519, 527
Hsp92II	CATG	3 cut(s)	112, 124, 404
HspAI	GCGC	2 cut(s)	150, 187
Ksp22I	TGATCA	1 cut(s)	126
Kzo9I	GATC	5 cut(s)	126, 156, 229, 264, 342
LguI	GCTCTTC	1 cut(s)	147
LpnPI	CCDG	5 cut(s)	246, 306, 324, 504, 518
Lsp1109I	GCAGC	1 cut(s)	188
LweI	GCATC	3 cut(s)	43, 180, 429
MaeI	CTAG	4 cut(s)	6, 63, 105, 134
MaeII	ACGT	4 cut(s)	252, 411, 519, 527
MaeIII	GTNAC	2 cut(s)	395, 438
MalI	GATC	5 cut(s)	128, 158, 231, 266, 344
MbiI	CCGCTC	1 cut(s)	140
MboI	GATC	5 cut(s)	126, 156, 229, 264, 342
MboII	GAAGA	2 cut(s)	134, 239
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	1 cut(s)	175
MlyI	GAGTC	2 cut(s)	71, 481
MnlI	CCTC	2 cut(s)	457, 485
MseI	TTAA	1 cut(s)	318
MspCI	CTTAAG	1 cut(s)	317
MspI	CCGG	2 cut(s)	293, 505
MspR9I	CCNGG	1 cut(s)	505
MwoI	GCNNNNNNNGC	4 cut(s)	26, 53, 254, 459
NciI	CCSGG	1 cut(s)	505
NcoI	CCATGG	1 cut(s)	400
NdeII	GATC	5 cut(s)	126, 156, 229, 264, 342
NheI	GCTAGC	1 cut(s)	104
NlaIII	CATG	3 cut(s)	112, 124, 404
NlaIV	GGNNCC	1 cut(s)	502
NmuCI	GTSAC	1 cut(s)	438
PciSI	GCTCTTC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	299
PflFI	GACNNNGTC	1 cut(s)	80
PflMI	CCANNNNNTGG	1 cut(s)	497
PkrI	GCNGC	2 cut(s)	139, 203
PleI	GAGTC	2 cut(s)	71, 481
PpsI	GAGTC	2 cut(s)	71, 481
PspN4I	GGNNCC	1 cut(s)	502
PstNI	CAGNNNCTG	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	229
PsyI	GACNNNGTC	1 cut(s)	80
SapI	GCTCTTC	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	2 cut(s)	138, 202
Sau3AI	GATC	5 cut(s)	126, 156, 229, 264, 342
SchI	GAGTC	2 cut(s)	71, 481
ScrFI	CCNGG	1 cut(s)	505
SduI	GDGCHC	1 cut(s)	166
SfaNI	GCATC	3 cut(s)	43, 180, 429
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	1 cut(s)	175
SsiI	CCGC	2 cut(s)	138, 508
SspMI	CTAG	4 cut(s)	6, 63, 105, 134
StyD4I	CCNGG	1 cut(s)	503
StyI	CCWWGG	1 cut(s)	400
TaaI	ACNGT	2 cut(s)	308, 376
TaiI	ACGT	4 cut(s)	255, 414, 522, 530
TaqI	TCGA	2 cut(s)	423, 477
TaqII	GACCGA	1 cut(s)	169
TasI	AATT	1 cut(s)	175
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseFI	GTSAC	1 cut(s)	438
TseI	GCWGC	1 cut(s)	201
Tsp45I	GTSAC	1 cut(s)	438
TspDTI	ATGAA	2 cut(s)	291, 338
TspGWI	ACGGA	1 cut(s)	347
Tth111I	GACNNNGTC	1 cut(s)	80
Van91I	CCANNNNNTGG	1 cut(s)	497
Vha464I	CTTAAG	1 cut(s)	317
XspI	CTAG	4 cut(s)	6, 63, 105, 134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.