Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004301

Physical Location & Seq

Genomic Coordinates Reverse (-)

17174242 .. 17174769

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1214000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGTTACAAGCTCTACACAATACAAAGCCCCATTTCACAGCCGCCACCGCCTCCTCCGTCACCAAAAACCAACTTATCCATGCTGTATTACGGCCTCATAGTCTTTGGAACAGTTGGCATAATCCTAGCCATGTACAACCTTATCTTCATCAAATGGACCTCGAGGCGCCACGGCCAGTCTCCGGCGTCAAGACCATCAAACAGTTTGGTTGATCTCTCAAGAACAAGGAGGGGTAGGAGCTTTGAGAACTTGGGCAGCTTCAGGTACCAGAAGAAAGAGGAATCAACGACAAAAGATGAAAATTCTGTTGAATGTGCTGTTTGTTTGTCAGTTTTTGAGGATGGAGAAGAAATAAGAAAGCTGCCTACTTGCAAGCACTCTTTTCATGCTCCTTGCATAGACATGTGGCTCTACTCTCACTCTGACTGCCCGATCTGTCGCACGCCCGTGCCCGTCAGCTCGTGGTGTCATCCGCAGCTGACGACTACGCCGGAGGACAATTCCAGAGAAGGCCTGCTAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

176

Amino Acids

19.8

Weight (kDa)

8.48

Isoelectric Point (pI)

66.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	105 - 148	3.6e-13	Ring finger domain
zf-RING_11	PF17123	105 - 134	2.6e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	105 - 147	3.9e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	106 - 147	5.3e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	113 - 148	4.7e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05280
fragaria_vesca	FvH4_1g08250
malus_domestica	MD01G1126200.v1.1 MD02G1086800.v1.1 MD07G1195700.v1.1 MD07G1195800.v1.1 MD07G1196000.v1.1 MD07G1196100.v1.1 MD15G1214000.v1.1
prunus_persica	Prupe.2G233100_v2.0.a1 Prupe.3G043300_v2.0.a1 Prupe.7G203000_v2.0.a1
pyrus_communis	pycom01g15190 pycom09g10280 pycom15g19020
rosa_chinensis	RchiOBHm_Chr2g0094301 RchiOBHm_Chr2g0144911
rosa_laevigata	RLG00000016475 RLG00000020118
rosa_multiflora	Rmu_sc0002354.1_g000011 Rmu_sc0003819.1_g000026
rosa_roxburghii	Rroxscaffold_2G00147280
rosa_rugosa	Rorug02G0042800
rosa_samantha	Rh2AG090600 Rh2AG442000 Rh2BG090500 Rh2BG452600 Rh2CG093000 Rh2CG429300 Rh2DG089500 Rh2DG462500
rosa_wichuraiana	Rw2G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	163
Acc65I	GGTACC	1 cut(s)	267
AccB1I	GGYRCC	2 cut(s)	168, 267
AciI	CCGC	3 cut(s)	44, 50, 476
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	304
AcuI	CTGAAG	1 cut(s)	247
AcyI	GRCGYC	2 cut(s)	169, 188
AfaI	GTAC	2 cut(s)	137, 269
AfiI	CCNNNNNNNGG	1 cut(s)	184
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	1 cut(s)	314
AleI	CACNNNNGTG	1 cut(s)	449
AluBI	AGCT	6 cut(s)	13, 243, 261, 364, 462, 481
AluI	AGCT	6 cut(s)	13, 243, 261, 364, 462, 481
Alw26I	GTCTC	1 cut(s)	186
Ama87I	CYCGRG	1 cut(s)	163
AoxI	GGCC	3 cut(s)	94, 175, 514
ApeKI	GCWGC	3 cut(s)	258, 364, 478
ApoI	RAATTY	1 cut(s)	304
Asp718I	GGTACC	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	54
AvaI	CYCGRG	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	456
BanI	GGYRCC	2 cut(s)	168, 267
BauI	CACGAG	1 cut(s)	463
BbvI	GCAGC	3 cut(s)	270, 351, 490
BccI	CCATC	2 cut(s)	205, 338
BceAI	ACGGC	2 cut(s)	109, 190
BcoDI	GTCTC	1 cut(s)	186
BfaI	CTAG	2 cut(s)	128, 521
BfoI	RGCGCY	1 cut(s)	172
BisI	GCNGC	4 cut(s)	44, 259, 365, 479
BlsI	GCNGC	4 cut(s)	45, 260, 366, 480
Bme18I	GGWCC	1 cut(s)	159
BmeT110I	CYCGRG	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	2 cut(s)	170, 269
BpuEI	CTTGAG	1 cut(s)	205
BsaHI	GRCGYC	2 cut(s)	169, 188
BsaJI	CCNNGG	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	178
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	2 cut(s)	349, 472
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseNI	ACTGG	1 cut(s)	178
BseRI	GAGGAG	1 cut(s)	45
BseSI	GKGCMC	1 cut(s)	456
BseXI	GCAGC	3 cut(s)	270, 351, 490
BshFI	GGCC	3 cut(s)	96, 177, 516
BshNI	GGYRCC	2 cut(s)	168, 267
BsiHKCI	CYCGRG	1 cut(s)	163
BsiSI	CCGG	2 cut(s)	185, 494
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	1 cut(s)	186
BsnI	GGCC	3 cut(s)	96, 177, 516
BsoBI	CYCGRG	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp1407I	TGTACA	1 cut(s)	135
Bsp143I	GATC	2 cut(s)	214, 435
BspACI	CCGC	3 cut(s)	44, 50, 476
BspANI	GGCC	3 cut(s)	96, 177, 516
BspLI	GGNNCC	2 cut(s)	170, 269
BspT107I	GGYRCC	2 cut(s)	168, 267
BsrGI	TGTACA	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	178
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	2 cut(s)	214, 435
BssNI	GRCGYC	2 cut(s)	169, 188
BssSI	CACGAG	1 cut(s)	463
Bst2BI	CACGAG	1 cut(s)	463
Bst4CI	ACNGT	2 cut(s)	115, 206
BstACI	GRCGYC	2 cut(s)	169, 188
BstAUI	TGTACA	1 cut(s)	135
BstC8I	GCNNGC	3 cut(s)	377, 446, 518
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	2 cut(s)	349, 472
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	2 cut(s)	217, 438
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	2 cut(s)	214, 435
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstNSI	RCATGY	1 cut(s)	409
BstSLI	GKGCMC	1 cut(s)	456
BstV1I	GCAGC	3 cut(s)	270, 351, 490
BsuRI	GGCC	3 cut(s)	96, 177, 516
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	349, 472
Cac8I	GCNNGC	3 cut(s)	377, 446, 518
CfoI	GCGC	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	159
CseI	GACGC	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	136, 268
CviAII	CATG	4 cut(s)	82, 133, 389, 406
CviQI	GTAC	2 cut(s)	136, 268
DinI	GGCGCC	1 cut(s)	170
DpnI	GATC	2 cut(s)	216, 437
DpnII	GATC	2 cut(s)	214, 435
EaeI	YGGCCR	1 cut(s)	175
Eco147I	AGGCCT	1 cut(s)	516
Eco47I	GGWCC	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	247
Eco88I	CYCGRG	1 cut(s)	163
EgeI	GGCGCC	1 cut(s)	170
EheI	GGCGCC	1 cut(s)	170
FaeI	CATG	4 cut(s)	85, 136, 392, 409
FaiI	YATR	7 cut(s)	83, 101, 122, 134, 390, 401, 407
FatI	CATG	4 cut(s)	81, 132, 388, 405
Fnu4HI	GCNGC	4 cut(s)	44, 259, 365, 479
FokI	GGATG	2 cut(s)	356, 459
Fsp4HI	GCNGC	4 cut(s)	44, 259, 365, 479
FspBI	CTAG	2 cut(s)	128, 521
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	4 cut(s)	44, 259, 365, 479
HaeII	RGCGCY	1 cut(s)	172
HaeIII	GGCC	3 cut(s)	96, 177, 516
HapII	CCGG	2 cut(s)	185, 494
HgaI	GACGC	1 cut(s)	177
HhaI	GCGC	1 cut(s)	171
Hin1I	GRCGYC	2 cut(s)	169, 188
Hin1II	CATG	4 cut(s)	85, 136, 392, 409
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HinfI	GANTC	1 cut(s)	284
HpaII	CCGG	2 cut(s)	185, 494
HphI	GGTGA	1 cut(s)	54
Hpy188I	TCNGA	2 cut(s)	427, 527
Hpy188III	TCNNGA	3 cut(s)	192, 222, 507
HpyAV	CCTTC	1 cut(s)	506
HpyCH4III	ACNGT	2 cut(s)	115, 206
HpyCH4V	TGCA	2 cut(s)	375, 399
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
Hsp92I	GRCGYC	2 cut(s)	169, 188
Hsp92II	CATG	4 cut(s)	85, 136, 392, 409
HspAI	GCGC	1 cut(s)	169
KasI	GGCGCC	1 cut(s)	168
KpnI	GGTACC	1 cut(s)	271
Kzo9I	GATC	2 cut(s)	214, 435
LmnI	GCTCC	2 cut(s)	240, 397
LpnPI	CCDG	6 cut(s)	191, 198, 250, 284, 507, 520
Lsp1109I	GCAGC	3 cut(s)	270, 351, 490
MaeI	CTAG	2 cut(s)	128, 521
MaeIII	GTNAC	2 cut(s)	5, 60
MalI	GATC	2 cut(s)	216, 437
MboI	GATC	2 cut(s)	214, 435
MboII	GAAGA	3 cut(s)	139, 286, 362
MhlI	GDGCHC	1 cut(s)	456
MluCI	AATT	2 cut(s)	304, 502
Mly113I	GGCGCC	1 cut(s)	169
MnlI	CCTC	9 cut(s)	63, 66, 107, 159, 172, 225, 274, 334, 490
MslI	CAYNNNNRTG	2 cut(s)	404, 449
MspA1I	CMGCKG	1 cut(s)	481
MspI	CCGG	2 cut(s)	185, 494
MwoI	GCNNNNNNNGC	1 cut(s)	49
NarI	GGCGCC	1 cut(s)	169
NdeII	GATC	2 cut(s)	214, 435
NlaIII	CATG	4 cut(s)	85, 136, 392, 409
NlaIV	GGNNCC	2 cut(s)	170, 269
NmuCI	GTSAC	1 cut(s)	60
NspI	RCATGY	1 cut(s)	409
OliI	CACNNNNGTG	1 cut(s)	449
PaeR7I	CTCGAG	1 cut(s)	163
PceI	AGGCCT	1 cut(s)	516
PciI	ACATGT	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	284
PkrI	GCNGC	4 cut(s)	45, 260, 366, 480
PluTI	GGCGCC	1 cut(s)	172
PscI	ACATGT	1 cut(s)	405
PspN4I	GGNNCC	2 cut(s)	170, 269
PspPI	GGNCC	1 cut(s)	159
PspXI	VCTCGAGB	1 cut(s)	163
PvuII	CAGCTG	1 cut(s)	481
RsaI	GTAC	2 cut(s)	137, 269
RsaNI	GTAC	2 cut(s)	136, 268
RseI	CAYNNNNRTG	2 cut(s)	404, 449
SatI	GCNGC	4 cut(s)	44, 259, 365, 479
Sau3AI	GATC	2 cut(s)	214, 435
Sau96I	GGNCC	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	456
SetI	ASST	9 cut(s)	15, 144, 164, 245, 263, 269, 366, 464, 483
SfoI	GGCGCC	1 cut(s)	170
Sfr274I	CTCGAG	1 cut(s)	163
SinI	GGWCC	1 cut(s)	159
SlaI	CTCGAG	1 cut(s)	163
SmiMI	CAYNNNNRTG	2 cut(s)	404, 449
SmlI	CTYRAG	2 cut(s)	163, 220
SmoI	CTYRAG	2 cut(s)	163, 220
Sse9I	AATT	2 cut(s)	304, 502
SseBI	AGGCCT	1 cut(s)	516
SsiI	CCGC	3 cut(s)	44, 50, 476
SspDI	GGCGCC	1 cut(s)	168
SspMI	CTAG	2 cut(s)	128, 521
StuI	AGGCCT	1 cut(s)	516
TaaI	ACNGT	2 cut(s)	115, 206
TaqI	TCGA	1 cut(s)	164
TasI	AATT	2 cut(s)	304, 502
TatI	WGTACW	1 cut(s)	135
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	1 cut(s)	284
TseFI	GTSAC	1 cut(s)	60
TseI	GCWGC	3 cut(s)	258, 364, 478
Tsp45I	GTSAC	1 cut(s)	60
TspDTI	ATGAA	3 cut(s)	139, 315, 377
TspGWI	ACGGA	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	159
XapI	RAATTY	1 cut(s)	304
XceI	RCATGY	1 cut(s)	409
XhoI	CTCGAG	1 cut(s)	163
XspI	CTAG	2 cut(s)	128, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.