Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004301

Physical Location & Seq

Genomic Coordinates Reverse (-)

58275302 .. 58275996

Gene Structure 695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG429300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTCAATATCATTGCTTTTTTCTGGCATTATGATCTTAGGGGTAATACTCATTTGCTTTGTAATTTACATTGTATTTACAGTAGCATGGTACGTATATGGTAGGCAAATACTATCTGCTCCAACATTAAGCCAGCAGGAGGACCCAGCGAAGGAGAAGTACTTTAGTTACCAGAAACTGAAGCCGGATGTGATCACATTCAACTACAAGAAAGAATTGAGTGATGATCCAAATCACGAAGAAGAGAATTCAGATCAAAATGAATGCGTGGTGTGCATGAGAGGTTTACAGTATTTGGAATTTGTGAGGCAACTTCCAAAATGCAAGCACACATTCCACGCGCCTTGTATAGACATGTGGCTCTACTCTCATTCTGATTGCCCCATCTGTCGGACGGTGATTGATCAGTTGCCGGATGAAGGTGCATTTACACCAGGCCGGAAGTCGGAGGTCTCTGTAGATATCAGCCCATCATTGACCTTAACAACCATCTCAATAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

167

Amino Acids

19.11

Weight (kDa)

5.13

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	87 - 131	1.4e-11	Ring finger domain
zf-RING_11	PF17123	88 - 117	9.2e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	88 - 130	2.9e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	101 - 131	7.8e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05280
fragaria_vesca	FvH4_1g08250
malus_domestica	MD01G1126200.v1.1 MD02G1086800.v1.1 MD07G1195700.v1.1 MD07G1195800.v1.1 MD07G1196000.v1.1 MD07G1196100.v1.1 MD15G1214000.v1.1
prunus_persica	Prupe.2G233100_v2.0.a1 Prupe.3G043300_v2.0.a1 Prupe.7G203000_v2.0.a1
pyrus_communis	pycom01g15190 pycom09g10280 pycom15g19020
rosa_chinensis	RchiOBHm_Chr2g0094301 RchiOBHm_Chr2g0144911
rosa_laevigata	RLG00000016475 RLG00000020118
rosa_multiflora	Rmu_sc0002354.1_g000011 Rmu_sc0003819.1_g000026
rosa_roxburghii	Rroxscaffold_2G00147280
rosa_rugosa	Rorug02G0042800
rosa_samantha	Rh2AG090600 Rh2AG442000 Rh2BG090500 Rh2BG452600 Rh2CG093000 Rh2CG429300 Rh2DG089500 Rh2DG462500
rosa_wichuraiana	Rw2G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	341
AclWI	GGATC	1 cut(s)	221
AcsI	RAATTY	2 cut(s)	247, 299
AcuI	CTGAAG	1 cut(s)	200
AfaI	GTAC	2 cut(s)	92, 161
AfiI	CCNNNNNNNGG	5 cut(s)	139, 151, 390, 419, 445
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	433
Alw26I	GTCTC	1 cut(s)	457
AlwI	GGATC	1 cut(s)	221
AlwNI	CAGNNNCTG	1 cut(s)	178
AoxI	GGCC	1 cut(s)	436
ApoI	RAATTY	2 cut(s)	247, 299
AspLEI	GCGC	1 cut(s)	343
AspS9I	GGNCC	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	409
AvaII	GGWCC	1 cut(s)	142
BarI	GAAGNNNNNNTAC	2 cut(s)	143, 175
BccI	CCATC	3 cut(s)	392, 478, 497
BciT130I	CCWGG	1 cut(s)	435
BclI	TGATCA	2 cut(s)	192, 403
BcoDI	GTCTC	1 cut(s)	457
BfaI	CTAG	1 cut(s)	502
BfmI	CTRYAG	1 cut(s)	456
BmcAI	AGTACT	1 cut(s)	161
Bme1390I	CCNGG	1 cut(s)	435
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	435
BsaAI	YACGTR	1 cut(s)	94
BsaBI	GATNNNNATC	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	457
Bsc4I	CCNNNNNNNGG	5 cut(s)	139, 151, 390, 419, 445
Bse3DI	GCAATG	1 cut(s)	11
Bse8I	GATNNNNATC	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	435
BseGI	GGATG	2 cut(s)	193, 421
BseJI	GATNNNNATC	1 cut(s)	231
BseLI	CCNNNNNNNGG	5 cut(s)	139, 151, 390, 419, 445
BseMI	GCAATG	1 cut(s)	11
BseYI	CCCAGC	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	341
BshFI	GGCC	1 cut(s)	438
BsiSI	CCGG	3 cut(s)	185, 413, 439
BslI	CCNNNNNNNGG	5 cut(s)	139, 151, 390, 419, 445
BsmAI	GTCTC	1 cut(s)	457
BsmI	GAATGC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	438
Bso31I	GGTCTC	1 cut(s)	457
Bsp143I	GATC	5 cut(s)	33, 192, 226, 253, 403
BspANI	GGCC	1 cut(s)	438
BspFNI	CGCG	1 cut(s)	341
BspLI	GGNNCC	1 cut(s)	144
BspPI	GGATC	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	457
BsrDI	GCAATG	1 cut(s)	11
BssMI	GATC	5 cut(s)	33, 192, 226, 253, 403
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	3 cut(s)	82, 291, 397
Bst6I	CTCTTC	1 cut(s)	237
BstBAI	YACGTR	1 cut(s)	94
BstC8I	GCNNGC	2 cut(s)	134, 326
BstDEI	CTNAG	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	193, 421
BstFNI	CGCG	1 cut(s)	341
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	5 cut(s)	36, 195, 229, 256, 406
BstMAI	GTCTC	1 cut(s)	457
BstMBI	GATC	5 cut(s)	33, 192, 226, 253, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	273
BstNI	CCWGG	1 cut(s)	435
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	433
BstSFI	CTRYAG	1 cut(s)	456
BstSNI	TACGTA	1 cut(s)	94
BstUI	CGCG	1 cut(s)	341
BsuRI	GGCC	1 cut(s)	438
BtsCI	GGATG	2 cut(s)	193, 421
Cac8I	GCNNGC	2 cut(s)	134, 326
CaiI	CAGNNNCTG	1 cut(s)	178
CfoI	GCGC	1 cut(s)	343
Cfr13I	GGNCC	1 cut(s)	142
Csp6I	GTAC	2 cut(s)	91, 160
CspCI	CAANNNNNGTGG	2 cut(s)	326, 361
CviAII	CATG	3 cut(s)	87, 277, 355
CviJI	RGCY	5 cut(s)	132, 184, 361, 438, 468
CviKI_1	RGCY	5 cut(s)	132, 184, 361, 438, 468
CviQI	GTAC	2 cut(s)	91, 160
DdeI	CTNAG	1 cut(s)	37
DpnI	GATC	5 cut(s)	35, 194, 228, 255, 405
DpnII	GATC	5 cut(s)	33, 192, 226, 253, 403
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco105I	TACGTA	1 cut(s)	94
Eco31I	GGTCTC	1 cut(s)	457
Eco32I	GATATC	1 cut(s)	463
Eco47I	GGWCC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	200
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRI	GAATTC	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	433
EcoRV	GATATC	1 cut(s)	463
FaeI	CATG	3 cut(s)	90, 280, 358
FaiI	YATR	7 cut(s)	32, 88, 97, 99, 278, 350, 356
FatI	CATG	3 cut(s)	86, 276, 354
FbaI	TGATCA	2 cut(s)	192, 403
FokI	GGATG	2 cut(s)	200, 428
FspBI	CTAG	1 cut(s)	502
GlaI	GCGC	1 cut(s)	342
GsaI	CCCAGC	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	438
HapII	CCGG	3 cut(s)	185, 413, 439
HhaI	GCGC	1 cut(s)	343
Hin1II	CATG	3 cut(s)	90, 280, 358
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HpaII	CCGG	3 cut(s)	185, 413, 439
HphI	GGTGA	1 cut(s)	409
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188I	TCNGA	4 cut(s)	253, 376, 393, 448
Hpy188III	TCNNGA	1 cut(s)	236
Hpy8I	GTNNAC	1 cut(s)	287
HpyAV	CCTTC	2 cut(s)	145, 413
HpyCH4III	ACNGT	3 cut(s)	82, 291, 397
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	3 cut(s)	276, 324, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	273
HpyF3I	CTNAG	1 cut(s)	37
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	90, 280, 358
HspAI	GCGC	1 cut(s)	341
Ksp22I	TGATCA	2 cut(s)	192, 403
Kzo9I	GATC	5 cut(s)	33, 192, 226, 253, 403
LmnI	GCTCC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	502
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	5 cut(s)	35, 194, 228, 255, 405
MboI	GATC	5 cut(s)	33, 192, 226, 253, 403
MboII	GAAGA	2 cut(s)	251, 254
MluCI	AATT	4 cut(s)	63, 215, 247, 299
MmeI	TCCRAC	3 cut(s)	146, 371, 426
MnlI	CCTC	4 cut(s)	133, 275, 300, 442
MseI	TTAA	2 cut(s)	128, 482
MspI	CCGG	3 cut(s)	185, 413, 439
MspR9I	CCNGG	1 cut(s)	435
Mva1269I	GAATGC	1 cut(s)	269
MvaI	CCWGG	1 cut(s)	435
MvnI	CGCG	1 cut(s)	341
MwoI	GCNNNNNNNGC	1 cut(s)	273
NdeII	GATC	5 cut(s)	33, 192, 226, 253, 403
NlaIII	CATG	3 cut(s)	90, 280, 358
NlaIV	GGNNCC	1 cut(s)	144
NspI	RCATGY	1 cut(s)	358
PciI	ACATGT	1 cut(s)	354
PctI	GAATGC	1 cut(s)	269
Ppu21I	YACGTR	1 cut(s)	94
PpuMI	RGGWCCY	1 cut(s)	142
PscI	ACATGT	1 cut(s)	354
Psp5II	RGGWCCY	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	433
PspFI	CCCAGC	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	142
PspPPI	RGGWCCY	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	178
RsaI	GTAC	2 cut(s)	92, 161
RsaNI	GTAC	2 cut(s)	91, 160
SaqAI	TTAA	2 cut(s)	128, 482
Sau3AI	GATC	5 cut(s)	33, 192, 226, 253, 403
Sau96I	GGNCC	1 cut(s)	142
ScaI	AGTACT	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	435
SetI	ASST	5 cut(s)	96, 286, 424, 453, 482
SfcI	CTRYAG	1 cut(s)	456
SinI	GGWCC	1 cut(s)	142
SnaBI	TACGTA	1 cut(s)	94
Sse9I	AATT	4 cut(s)	63, 215, 247, 299
SspMI	CTAG	1 cut(s)	502
StyD4I	CCNGG	1 cut(s)	433
TaaI	ACNGT	3 cut(s)	82, 291, 397
TaiI	ACGT	1 cut(s)	96
TasI	AATT	4 cut(s)	63, 215, 247, 299
TatI	WGTACW	1 cut(s)	159
Tru1I	TTAA	2 cut(s)	128, 482
Tru9I	TTAA	2 cut(s)	128, 482
TspDTI	ATGAA	2 cut(s)	276, 432
VpaK11BI	GGWCC	1 cut(s)	142
XapI	RAATTY	2 cut(s)	247, 299
XceI	RCATGY	1 cut(s)	358
XspI	CTAG	1 cut(s)	502
ZrmI	AGTACT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.