Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004301

Physical Location & Seq

Genomic Coordinates Reverse (-)

4369357 .. 4369944

Gene Structure 588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g08250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGGTTTCTACATGGCACCAACTCCCTATCCGAACCCCAATTTTCCGCCGCCGCCTCCTCCACCTTCGGCGGCCAAAGCCACCAGCTTGCCTATGTTGTATTATGGCCTCATAGTTGTTGGAACTGCCGCTATTGTTCTAGCCATGTACAATCTCATCTTCATCAAATGGTCTCCACCGCGCCGCCCACCATCACCACCAAGAAATGTACGGTCCAACGCTTTCGTTGAGGCTGCAAGGTCAGCAAGGAGCAGGAGCTTTGAGAACTTGGATAGCTTCAAGTACAAGAAACAGAAGGAGGGGTCAGTTGCTCAAGAACAAGGTCAAGTAGTGATCGATCATGAATGCGCAGTTTGCTTGTCAGTATTTGAAGATGGAGAAGAGGTAAGGAAGTTGCCAAGCTGCAAGCACTCGTTTCATGCTCCTTGCATAGATATGTGGCTCTACTCTCACTCCGATTGTCCGCTCTGCCGGGCAACTGTGCCGGTCGTTTCATGGTGCCACCGAGAGTTACCCTCTGCTACGCCGGAGGAGCATTCCAGAGAAGTCCTGCTGGTATCCAGCGGCAGCGCAAGTTTGCCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

196

Amino Acids

21.57

Weight (kDa)

8.16

Isoelectric Point (pI)

70.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	115 - 158	3.6e-13	Ring finger domain
zf-RING_11	PF17123	115 - 144	1.7e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	115 - 157	2.8e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	116 - 157	2.7e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	119 - 158	1.7e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05280
fragaria_vesca	FvH4_1g08250
malus_domestica	MD01G1126200.v1.1 MD02G1086800.v1.1 MD07G1195700.v1.1 MD07G1195800.v1.1 MD07G1196000.v1.1 MD07G1196100.v1.1 MD15G1214000.v1.1
prunus_persica	Prupe.2G233100_v2.0.a1 Prupe.3G043300_v2.0.a1 Prupe.7G203000_v2.0.a1
pyrus_communis	pycom01g15190 pycom09g10280 pycom15g19020
rosa_chinensis	RchiOBHm_Chr2g0094301 RchiOBHm_Chr2g0144911
rosa_laevigata	RLG00000016475 RLG00000020118
rosa_multiflora	Rmu_sc0002354.1_g000011 Rmu_sc0003819.1_g000026
rosa_roxburghii	Rroxscaffold_2G00147280
rosa_rugosa	Rorug02G0042800
rosa_samantha	Rh2AG090600 Rh2AG442000 Rh2BG090500 Rh2BG452600 Rh2CG093000 Rh2CG429300 Rh2DG089500 Rh2DG462500
rosa_wichuraiana	Rw2G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	349
AccB1I	GGYRCC	2 cut(s)	16, 498
AccBSI	CCGCTC	1 cut(s)	466
AccII	CGCG	1 cut(s)	181
AciI	CCGC	9 cut(s)	47, 50, 53, 71, 129, 179, 184, 464, 564
AcoI	YGGCCR	1 cut(s)	72
AfaI	GTAC	3 cut(s)	149, 210, 284
AgsI	TTSAA	2 cut(s)	280, 371
AluBI	AGCT	4 cut(s)	87, 258, 276, 402
AluI	AGCT	4 cut(s)	87, 258, 276, 402
Alw26I	GTCTC	1 cut(s)	177
AoxI	GGCC	2 cut(s)	72, 106
ApeKI	GCWGC	3 cut(s)	233, 402, 567
AspLEI	GCGC	3 cut(s)	183, 350, 572
AspS9I	GGNCC	1 cut(s)	213
AsuC2I	CCSGG	1 cut(s)	473
AsuHPI	GGTGA	1 cut(s)	186
AvaII	GGWCC	1 cut(s)	213
BanI	GGYRCC	2 cut(s)	16, 498
BbvI	GCAGC	3 cut(s)	220, 389, 579
BccI	CCATC	2 cut(s)	199, 368
BciVI	GTATCC	1 cut(s)	568
BcnI	CCSGG	1 cut(s)	473
BcoDI	GTCTC	1 cut(s)	177
BfaI	CTAG	1 cut(s)	140
BfuI	GTATCC	1 cut(s)	568
BisI	GCNGC	9 cut(s)	50, 53, 72, 129, 184, 234, 403, 565, 568
BlsI	GCNGC	9 cut(s)	51, 54, 73, 130, 185, 235, 404, 566, 569
Bme1390I	CCNGG	1 cut(s)	473
Bme18I	GGWCC	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	213
BmiI	GGNNCC	2 cut(s)	18, 500
BmrFI	CCNGG	1 cut(s)	473
BplI	GAGNNNNNCTC	2 cut(s)	500, 532
BpuEI	CTTGAG	1 cut(s)	297
BpuMI	CCSGG	1 cut(s)	473
Bsa29I	ATCGAT	1 cut(s)	336
BsaI	GGTCTC	1 cut(s)	177
BsaXI	ACNNNNNCTCC	4 cut(s)	369, 399, 437, 467
Bse118I	RCCGGY	1 cut(s)	484
Bse1I	ACTGG	1 cut(s)	581
BseCI	ATCGAT	1 cut(s)	336
BseNI	ACTGG	1 cut(s)	581
BseRI	GAGGAG	2 cut(s)	48, 545
BseXI	GCAGC	3 cut(s)	220, 389, 579
Bsh1236I	CGCG	1 cut(s)	181
Bsh1285I	CGRYCG	1 cut(s)	489
BshFI	GGCC	2 cut(s)	74, 108
BshNI	GGYRCC	2 cut(s)	16, 498
BshVI	ATCGAT	1 cut(s)	336
BsiEI	CGRYCG	1 cut(s)	489
BsiSI	CCGG	3 cut(s)	472, 485, 527
BsmAI	GTCTC	1 cut(s)	177
BsmI	GAATGC	2 cut(s)	350, 535
BsnI	GGCC	2 cut(s)	74, 108
Bso31I	GGTCTC	1 cut(s)	177
Bsp1407I	TGTACA	1 cut(s)	147
Bsp143I	GATC	2 cut(s)	333, 337
BspACI	CCGC	9 cut(s)	47, 50, 53, 71, 129, 179, 184, 464, 564
BspANI	GGCC	2 cut(s)	74, 108
BspDI	ATCGAT	1 cut(s)	336
BspFNI	CGCG	1 cut(s)	181
BspHI	TCATGA	1 cut(s)	340
BspLI	GGNNCC	2 cut(s)	18, 500
BspT107I	GGYRCC	2 cut(s)	16, 498
BspTNI	GGTCTC	1 cut(s)	177
BsrBI	CCGCTC	1 cut(s)	466
BsrFI	RCCGGY	1 cut(s)	484
BsrGI	TGTACA	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	581
BssAI	RCCGGY	1 cut(s)	484
BssMI	GATC	2 cut(s)	333, 337
Bst4CI	ACNGT	2 cut(s)	213, 481
Bst6I	CTCTTC	1 cut(s)	375
BstAUI	TGTACA	1 cut(s)	147
BstC8I	GCNNGC	2 cut(s)	89, 407
BstFNI	CGCG	1 cut(s)	181
BstHHI	GCGC	3 cut(s)	183, 350, 572
BstKTI	GATC	2 cut(s)	336, 340
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	2 cut(s)	333, 337
BstMCI	CGRYCG	1 cut(s)	489
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 242, 354, 532
BstSCI	CCNGG	1 cut(s)	471
BstUI	CGCG	1 cut(s)	181
BstV1I	GCAGC	3 cut(s)	220, 389, 579
Bsu15I	ATCGAT	1 cut(s)	336
BsuI	GTATCC	1 cut(s)	568
BsuRI	GGCC	2 cut(s)	74, 108
BsuTUI	ATCGAT	1 cut(s)	336
Cac8I	GCNNGC	2 cut(s)	89, 407
CciI	TCATGA	1 cut(s)	340
CfoI	GCGC	3 cut(s)	183, 350, 572
Cfr10I	RCCGGY	1 cut(s)	484
Cfr13I	GGNCC	1 cut(s)	213
ClaI	ATCGAT	1 cut(s)	336
Csp6I	GTAC	3 cut(s)	148, 209, 283
CviAII	CATG	5 cut(s)	13, 145, 341, 419, 495
CviQI	GTAC	3 cut(s)	148, 209, 283
DpnI	GATC	2 cut(s)	335, 339
DpnII	GATC	2 cut(s)	333, 337
EaeI	YGGCCR	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
EciI	GGCGGA	1 cut(s)	36
Eco31I	GGTCTC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	213
FaeI	CATG	5 cut(s)	16, 148, 344, 422, 498
FatI	CATG	5 cut(s)	12, 144, 340, 418, 494
Fnu4HI	GCNGC	9 cut(s)	50, 53, 72, 129, 184, 234, 403, 565, 568
Fsp4HI	GCNGC	9 cut(s)	50, 53, 72, 129, 184, 234, 403, 565, 568
FspBI	CTAG	1 cut(s)	140
FspI	TGCGCA	1 cut(s)	349
GlaI	GCGC	3 cut(s)	182, 349, 571
GluI	GCNGC	9 cut(s)	50, 53, 72, 129, 184, 234, 403, 565, 568
HaeIII	GGCC	2 cut(s)	74, 108
HapII	CCGG	3 cut(s)	472, 485, 527
HhaI	GCGC	3 cut(s)	183, 350, 572
Hin1II	CATG	5 cut(s)	16, 148, 344, 422, 498
Hin6I	GCGC	3 cut(s)	181, 348, 570
HinP1I	GCGC	3 cut(s)	181, 348, 570
HpaII	CCGG	3 cut(s)	472, 485, 527
HphI	GGTGA	1 cut(s)	186
Hpy188I	TCNGA	2 cut(s)	33, 457
Hpy188III	TCNNGA	3 cut(s)	314, 341, 540
HpyAV	CCTTC	2 cut(s)	75, 289
HpyCH4III	ACNGT	2 cut(s)	213, 481
HpyCH4V	TGCA	3 cut(s)	236, 405, 429
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 242, 354, 532
Hsp92II	CATG	5 cut(s)	16, 148, 344, 422, 498
HspAI	GCGC	3 cut(s)	181, 348, 570
Kzo9I	GATC	2 cut(s)	333, 337
LmnI	GCTCC	4 cut(s)	249, 255, 427, 532
LpnPI	CCDG	9 cut(s)	97, 238, 485, 498, 539, 540, 553, 563, 574
Lsp1109I	GCAGC	3 cut(s)	220, 389, 579
MaeI	CTAG	1 cut(s)	140
MaeIII	GTNAC	1 cut(s)	510
MalI	GATC	2 cut(s)	335, 339
MbiI	CCGCTC	1 cut(s)	466
MboI	GATC	2 cut(s)	333, 337
MboII	GAAGA	3 cut(s)	151, 383, 392
MluCI	AATT	1 cut(s)	40
MmeI	TCCRAC	2 cut(s)	100, 240
MnlI	CCTC	8 cut(s)	66, 69, 119, 223, 292, 376, 523, 526
MseI	TTAA	1 cut(s)	586
MslI	CAYNNNNRTG	1 cut(s)	434
MspA1I	CMGCKG	1 cut(s)	564
MspI	CCGG	3 cut(s)	472, 485, 527
MspR9I	CCNGG	1 cut(s)	473
Mva1269I	GAATGC	2 cut(s)	350, 535
MvnI	CGCG	1 cut(s)	181
MwoI	GCNNNNNNNGC	4 cut(s)	77, 242, 354, 532
NciI	CCSGG	1 cut(s)	473
NdeII	GATC	2 cut(s)	333, 337
NlaIII	CATG	5 cut(s)	16, 148, 344, 422, 498
NlaIV	GGNNCC	2 cut(s)	18, 500
NsbI	TGCGCA	1 cut(s)	349
PagI	TCATGA	1 cut(s)	340
PctI	GAATGC	2 cut(s)	350, 535
PkrI	GCNGC	9 cut(s)	51, 54, 73, 130, 185, 235, 404, 566, 569
PspN4I	GGNNCC	2 cut(s)	18, 500
PspPI	GGNCC	1 cut(s)	213
RsaI	GTAC	3 cut(s)	149, 210, 284
RsaNI	GTAC	3 cut(s)	148, 209, 283
RseI	CAYNNNNRTG	1 cut(s)	434
SaqAI	TTAA	1 cut(s)	586
SatI	GCNGC	9 cut(s)	50, 53, 72, 129, 184, 234, 403, 565, 568
Sau3AI	GATC	2 cut(s)	333, 337
Sau96I	GGNCC	1 cut(s)	213
ScrFI	CCNGG	1 cut(s)	473
SetI	ASST	8 cut(s)	67, 89, 242, 260, 278, 325, 387, 404
SinI	GGWCC	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
Sse9I	AATT	1 cut(s)	40
SsiI	CCGC	9 cut(s)	47, 50, 53, 71, 129, 179, 184, 464, 564
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	471
TaaI	ACNGT	2 cut(s)	213, 481
TaqI	TCGA	1 cut(s)	336
TasI	AATT	1 cut(s)	40
TatI	WGTACW	2 cut(s)	147, 282
TauI	GCSGC	6 cut(s)	52, 55, 74, 131, 186, 567
Tru1I	TTAA	1 cut(s)	586
Tru9I	TTAA	1 cut(s)	586
TseI	GCWGC	3 cut(s)	233, 402, 567
TspDTI	ATGAA	4 cut(s)	151, 357, 407, 483
VpaK11BI	GGWCC	1 cut(s)	213
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.