Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004301

Physical Location & Seq

Genomic Coordinates Reverse (-)

7589131 .. 7589712

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG090600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCGTTCCTACATGGCACCAACGTCCTCTCCCAGCCCCTTTTTGCCGCCGCCACCCCCGCCTCCGGCGACCAAAAGCACCAGCTTGCCTATGTTGTATTATGGCCTCATAGTTGTTGGAACTGCCGCTATTGTTCTAGCCATGTACAATCTCATCTTCATCAAATGGTCCGCCCCGCGCCACCCCCCATCATCACCGAGAAATGTTAGGTCCAACGCTTTTGTTGAGGCTGCAAGGTCAGCAAGGAGCAGGAGCTTTGAGAACTTGGACAGCTTCAAGTACAAGAAACAGGAGAGGTCAGTGGCTCAAGAACAAGGCCAAGTGCTGATCGATTATGAATGCGCGGTTTGCTTGTCGGTGTTTGAAGATGGAGAAGAGGTAAGGAAGTTGCCTAGCTGCAAGCACTCGTTTCATGCTCCTTGCATAGATATGTGGCTTTACTCTCACTCAGATTGCCCACTCTGCCGGGCAACGGTGCCACTCGTTTCTTGGTGCCACCGGGAGTTAACCACTACTACGCCGGAGGAGCATTCCAGAGAAGTCCTGCTGGTTTCTAGCAGCATCGCAAGTTCACCGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

193

Amino Acids

21.5

Weight (kDa)

8.17

Isoelectric Point (pI)

77.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	113 - 156	1.8e-13	Ring finger domain
zf-RING_11	PF17123	113 - 142	1.7e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	113 - 155	2.8e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	114 - 155	2.7e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	122 - 156	2.2e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05280
fragaria_vesca	FvH4_1g08250
malus_domestica	MD01G1126200.v1.1 MD02G1086800.v1.1 MD07G1195700.v1.1 MD07G1195800.v1.1 MD07G1196000.v1.1 MD07G1196100.v1.1 MD15G1214000.v1.1
prunus_persica	Prupe.2G233100_v2.0.a1 Prupe.3G043300_v2.0.a1 Prupe.7G203000_v2.0.a1
pyrus_communis	pycom01g15190 pycom09g10280 pycom15g19020
rosa_chinensis	RchiOBHm_Chr2g0094301 RchiOBHm_Chr2g0144911
rosa_laevigata	RLG00000016475 RLG00000020118
rosa_multiflora	Rmu_sc0002354.1_g000011 Rmu_sc0003819.1_g000026
rosa_roxburghii	Rroxscaffold_2G00147280
rosa_rugosa	Rorug02G0042800
rosa_samantha	Rh2AG090600 Rh2AG442000 Rh2BG090500 Rh2BG452600 Rh2CG093000 Rh2CG429300 Rh2DG089500 Rh2DG462500
rosa_wichuraiana	Rw2G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	16, 475, 492
AccII	CGCG	2 cut(s)	178, 344
AciI	CCGC	7 cut(s)	47, 50, 59, 126, 171, 176, 344
AfaI	GTAC	2 cut(s)	146, 281
AfiI	CCNNNNNNNGG	2 cut(s)	64, 472
AgeI	ACCGGT	1 cut(s)	574
AgsI	TTSAA	2 cut(s)	277, 365
AluBI	AGCT	4 cut(s)	84, 255, 273, 396
AluI	AGCT	4 cut(s)	84, 255, 273, 396
AoxI	GGCC	2 cut(s)	103, 316
ApeKI	GCWGC	3 cut(s)	230, 396, 558
AsiGI	ACCGGT	1 cut(s)	574
AspLEI	GCGC	2 cut(s)	180, 344
AspS9I	GGNCC	2 cut(s)	168, 210
AsuC2I	CCSGG	2 cut(s)	467, 500
AsuHPI	GGTGA	2 cut(s)	186, 564
AvaII	GGWCC	2 cut(s)	168, 210
BanI	GGYRCC	3 cut(s)	16, 475, 492
BbvI	GCAGC	3 cut(s)	217, 383, 570
BccI	CCATC	2 cut(s)	196, 362
BcnI	CCSGG	2 cut(s)	467, 500
BfaI	CTAG	3 cut(s)	137, 393, 555
BisI	GCNGC	6 cut(s)	47, 50, 126, 231, 397, 559
BlsI	GCNGC	6 cut(s)	48, 51, 127, 232, 398, 560
Bme1390I	CCNGG	2 cut(s)	467, 500
Bme18I	GGWCC	2 cut(s)	168, 210
BmgT120I	GGNCC	2 cut(s)	168, 210
BmiI	GGNNCC	3 cut(s)	18, 477, 494
BmrFI	CCNGG	2 cut(s)	467, 500
BmsI	GCATC	1 cut(s)	570
BpuEI	CTTGAG	1 cut(s)	291
BpuMI	CCSGG	2 cut(s)	467, 500
Bsa29I	ATCGAT	1 cut(s)	330
BsaWI	WCCGGW	1 cut(s)	574
BsaXI	ACNNNNNCTCC	4 cut(s)	13, 43, 363, 393
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 472
Bse118I	RCCGGY	1 cut(s)	574
BseCI	ATCGAT	1 cut(s)	330
BseLI	CCNNNNNNNGG	2 cut(s)	64, 472
BseMII	CTCAG	1 cut(s)	462
BseRI	GAGGAG	1 cut(s)	539
BseXI	GCAGC	3 cut(s)	217, 383, 570
BseYI	CCCAGC	1 cut(s)	32
Bsh1236I	CGCG	2 cut(s)	178, 344
BshFI	GGCC	2 cut(s)	105, 318
BshNI	GGYRCC	3 cut(s)	16, 475, 492
BshTI	ACCGGT	1 cut(s)	574
BshVI	ATCGAT	1 cut(s)	330
BsiSI	CCGG	5 cut(s)	65, 466, 499, 521, 575
BslI	CCNNNNNNNGG	2 cut(s)	64, 472
BsmI	GAATGC	2 cut(s)	344, 529
BsnI	GGCC	2 cut(s)	105, 318
Bsp1407I	TGTACA	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	327
BspACI	CCGC	7 cut(s)	47, 50, 59, 126, 171, 176, 344
BspANI	GGCC	2 cut(s)	105, 318
BspCNI	CTCAG	1 cut(s)	461
BspDI	ATCGAT	1 cut(s)	330
BspFNI	CGCG	2 cut(s)	178, 344
BspLI	GGNNCC	3 cut(s)	18, 477, 494
BspT107I	GGYRCC	3 cut(s)	16, 475, 492
BsrFI	RCCGGY	1 cut(s)	574
BsrGI	TGTACA	1 cut(s)	144
BssAI	RCCGGY	1 cut(s)	574
BssMI	GATC	1 cut(s)	327
Bst4CI	ACNGT	1 cut(s)	475
Bst6I	CTCTTC	1 cut(s)	369
BstAUI	TGTACA	1 cut(s)	144
BstC8I	GCNNGC	2 cut(s)	86, 401
BstDEI	CTNAG	1 cut(s)	448
BstFNI	CGCG	2 cut(s)	178, 344
BstHHI	GCGC	2 cut(s)	180, 344
BstKTI	GATC	1 cut(s)	330
BstMBI	GATC	1 cut(s)	327
BstMWI	GCNNNNNNNGC	5 cut(s)	58, 239, 348, 462, 526
BstSCI	CCNGG	2 cut(s)	465, 498
BstUI	CGCG	2 cut(s)	178, 344
BstV1I	GCAGC	3 cut(s)	217, 383, 570
Bsu15I	ATCGAT	1 cut(s)	330
BsuRI	GGCC	2 cut(s)	105, 318
BsuTUI	ATCGAT	1 cut(s)	330
BtgZI	GCGATG	1 cut(s)	547
BtsIMutI	CAGTG	1 cut(s)	306
Cac8I	GCNNGC	2 cut(s)	86, 401
CfoI	GCGC	2 cut(s)	180, 344
Cfr10I	RCCGGY	1 cut(s)	574
Cfr13I	GGNCC	2 cut(s)	168, 210
ClaI	ATCGAT	1 cut(s)	330
Csp6I	GTAC	2 cut(s)	145, 280
CspAI	ACCGGT	1 cut(s)	574
CviAII	CATG	3 cut(s)	13, 142, 413
CviQI	GTAC	2 cut(s)	145, 280
DdeI	CTNAG	1 cut(s)	448
DpnI	GATC	1 cut(s)	329
DpnII	GATC	1 cut(s)	327
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
EciI	GGCGGA	1 cut(s)	160
Eco47I	GGWCC	2 cut(s)	168, 210
FaeI	CATG	3 cut(s)	16, 145, 416
FaiI	YATR	9 cut(s)	14, 92, 102, 110, 143, 336, 414, 425, 431
FatI	CATG	3 cut(s)	12, 141, 412
FauI	CCCGC	2 cut(s)	66, 183
Fnu4HI	GCNGC	6 cut(s)	47, 50, 126, 231, 397, 559
Fsp4HI	GCNGC	6 cut(s)	47, 50, 126, 231, 397, 559
FspBI	CTAG	3 cut(s)	137, 393, 555
GlaI	GCGC	2 cut(s)	179, 343
GluI	GCNGC	6 cut(s)	47, 50, 126, 231, 397, 559
GsaI	CCCAGC	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	105, 318
HapII	CCGG	5 cut(s)	65, 466, 499, 521, 575
HhaI	GCGC	2 cut(s)	180, 344
Hin1II	CATG	3 cut(s)	16, 145, 416
Hin6I	GCGC	2 cut(s)	178, 342
HinP1I	GCGC	2 cut(s)	178, 342
HincII	GTYRAC	1 cut(s)	507
HindII	GTYRAC	1 cut(s)	507
HpaI	GTTAAC	1 cut(s)	507
HpaII	CCGG	5 cut(s)	65, 466, 499, 521, 575
HphI	GGTGA	2 cut(s)	186, 564
Hpy166II	GTNNAC	2 cut(s)	507, 572
Hpy188I	TCNGA	1 cut(s)	451
Hpy188III	TCNNGA	2 cut(s)	308, 534
Hpy8I	GTNNAC	2 cut(s)	507, 572
HpyCH4III	ACNGT	1 cut(s)	475
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	3 cut(s)	233, 399, 423
HpyF10VI	GCNNNNNNNGC	5 cut(s)	58, 239, 348, 462, 526
HpyF3I	CTNAG	1 cut(s)	448
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	3 cut(s)	16, 145, 416
HspAI	GCGC	2 cut(s)	178, 342
KspAI	GTTAAC	1 cut(s)	507
Kzo9I	GATC	1 cut(s)	327
LmnI	GCTCC	4 cut(s)	246, 252, 421, 526
Lsp1109I	GCAGC	3 cut(s)	217, 383, 570
LweI	GCATC	1 cut(s)	570
MaeI	CTAG	3 cut(s)	137, 393, 555
MaeII	ACGT	1 cut(s)	23
MalI	GATC	1 cut(s)	329
MboI	GATC	1 cut(s)	327
MboII	GAAGA	3 cut(s)	148, 377, 386
MmeI	TCCRAC	2 cut(s)	97, 237
MnlI	CCTC	7 cut(s)	37, 72, 116, 220, 288, 370, 517
MseI	TTAA	2 cut(s)	506, 580
MslI	CAYNNNNRTG	1 cut(s)	428
MspI	CCGG	5 cut(s)	65, 466, 499, 521, 575
MspR9I	CCNGG	2 cut(s)	467, 500
Mva1269I	GAATGC	2 cut(s)	344, 529
MvnI	CGCG	2 cut(s)	178, 344
MwoI	GCNNNNNNNGC	5 cut(s)	58, 239, 348, 462, 526
NciI	CCSGG	2 cut(s)	467, 500
NdeII	GATC	1 cut(s)	327
NlaIII	CATG	3 cut(s)	16, 145, 416
NlaIV	GGNNCC	3 cut(s)	18, 477, 494
PctI	GAATGC	2 cut(s)	344, 529
PinAI	ACCGGT	1 cut(s)	574
PkrI	GCNGC	6 cut(s)	48, 51, 127, 232, 398, 560
PspFI	CCCAGC	1 cut(s)	32
PspN4I	GGNNCC	3 cut(s)	18, 477, 494
PspPI	GGNCC	2 cut(s)	168, 210
RsaI	GTAC	2 cut(s)	146, 281
RsaNI	GTAC	2 cut(s)	145, 280
RseI	CAYNNNNRTG	1 cut(s)	428
SaqAI	TTAA	2 cut(s)	506, 580
SatI	GCNGC	6 cut(s)	47, 50, 126, 231, 397, 559
Sau3AI	GATC	1 cut(s)	327
Sau96I	GGNCC	2 cut(s)	168, 210
ScrFI	CCNGG	2 cut(s)	467, 500
SetI	ASST	9 cut(s)	26, 86, 212, 239, 257, 275, 299, 381, 398
SfaNI	GCATC	1 cut(s)	570
SinI	GGWCC	2 cut(s)	168, 210
SmiMI	CAYNNNNRTG	1 cut(s)	428
SmlI	CTYRAG	1 cut(s)	306
SmoI	CTYRAG	1 cut(s)	306
SsiI	CCGC	7 cut(s)	47, 50, 59, 126, 171, 176, 344
SspMI	CTAG	3 cut(s)	137, 393, 555
StyD4I	CCNGG	2 cut(s)	465, 498
TaaI	ACNGT	1 cut(s)	475
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	330
TatI	WGTACW	2 cut(s)	144, 279
TauI	GCSGC	3 cut(s)	49, 52, 128
Tru1I	TTAA	2 cut(s)	506, 580
Tru9I	TTAA	2 cut(s)	506, 580
TscAI	CASTG	1 cut(s)	306
TseI	GCWGC	3 cut(s)	230, 396, 558
TspDTI	ATGAA	3 cut(s)	148, 351, 401
TspRI	CASTG	1 cut(s)	306
VpaK11BI	GGWCC	2 cut(s)	168, 210
XcmI	CCANNNNNNNNNTGG	1 cut(s)	486
XspI	CTAG	3 cut(s)	137, 393, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.