Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004301

Physical Location & Seq

Genomic Coordinates Reverse (-)

65301675 .. 65304898

Gene Structure 3224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG442000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTCCAGCAACCCCATTAATTTGGTTGCAATAGCGAGCAATAAGCCATTCACTGCAGTAGCATGGTACGTATATGGTAGGCAAATACTATCTGCTCCAACATTAAGCCAGCAGGAGGACCCAGCGAAGGAGAAGTACTTTAGTTACCAGAAACTGAAGCCGGATGTGATCACATTCAACTACAAGAAAGAATTGAGTGATGATCCAAATCACGAAGAAGAGAATTCAGATCAAAATGAATGCGTGGTGTGCATGAGAGGTTTACAGTATTTGGAATTTGTGAGGCAACTTCCAAAATGCAAGCACACATTCCACGCGCCTTGTATAGACATGTGGCTCTACTCTCATTCTGATTGCCCCATCTGTCGGACGGTGATTGATCAGTTGCCGGATGAAGGTGCATTTACACCAGGCCGGAAGTCGGAGGTCTCTGTAGATATCAGCCCATCATTGACCTTAACAACCATCTCAATAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

159

Amino Acids

18.08

Weight (kDa)

5.31

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	79 - 123	1.3e-11	Ring finger domain
zf-RING_11	PF17123	80 - 109	8.5e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	80 - 122	2.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	93 - 123	7.1e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05280
fragaria_vesca	FvH4_1g08250
malus_domestica	MD01G1126200.v1.1 MD02G1086800.v1.1 MD07G1195700.v1.1 MD07G1195800.v1.1 MD07G1196000.v1.1 MD07G1196100.v1.1 MD15G1214000.v1.1
prunus_persica	Prupe.2G233100_v2.0.a1 Prupe.3G043300_v2.0.a1 Prupe.7G203000_v2.0.a1
pyrus_communis	pycom01g15190 pycom09g10280 pycom15g19020
rosa_chinensis	RchiOBHm_Chr2g0094301 RchiOBHm_Chr2g0144911
rosa_laevigata	RLG00000016475 RLG00000020118
rosa_multiflora	Rmu_sc0002354.1_g000011 Rmu_sc0003819.1_g000026
rosa_roxburghii	Rroxscaffold_2G00147280
rosa_rugosa	Rorug02G0042800
rosa_samantha	Rh2AG090600 Rh2AG442000 Rh2BG090500 Rh2BG452600 Rh2CG093000 Rh2CG429300 Rh2DG089500 Rh2DG462500
rosa_wichuraiana	Rw2G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	317
AclWI	GGATC	1 cut(s)	197
AcsI	RAATTY	2 cut(s)	223, 275
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	2 cut(s)	68, 137
AfiI	CCNNNNNNNGG	5 cut(s)	115, 127, 366, 395, 421
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	409
Alw26I	GTCTC	1 cut(s)	433
AlwI	GGATC	1 cut(s)	197
AlwNI	CAGNNNCTG	1 cut(s)	154
AoxI	GGCC	1 cut(s)	412
ApoI	RAATTY	2 cut(s)	223, 275
AseI	ATTAAT	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	319
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	385
AvaII	GGWCC	1 cut(s)	118
BarI	GAAGNNNNNNTAC	2 cut(s)	119, 151
BccI	CCATC	3 cut(s)	368, 454, 473
BciT130I	CCWGG	1 cut(s)	411
BclI	TGATCA	2 cut(s)	168, 379
BcoDI	GTCTC	1 cut(s)	433
BfaI	CTAG	1 cut(s)	478
BfmI	CTRYAG	2 cut(s)	54, 432
BmcAI	AGTACT	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	411
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	411
BsaAI	YACGTR	1 cut(s)	70
BsaBI	GATNNNNATC	1 cut(s)	207
BsaI	GGTCTC	1 cut(s)	433
Bsc4I	CCNNNNNNNGG	5 cut(s)	115, 127, 366, 395, 421
Bse8I	GATNNNNATC	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	411
BseGI	GGATG	2 cut(s)	169, 397
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	5 cut(s)	115, 127, 366, 395, 421
BseYI	CCCAGC	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	317
BshFI	GGCC	1 cut(s)	414
BsiSI	CCGG	3 cut(s)	161, 389, 415
BslI	CCNNNNNNNGG	5 cut(s)	115, 127, 366, 395, 421
BsmAI	GTCTC	1 cut(s)	433
BsmI	GAATGC	1 cut(s)	245
BsnI	GGCC	1 cut(s)	414
Bso31I	GGTCTC	1 cut(s)	433
Bsp143I	GATC	4 cut(s)	168, 202, 229, 379
BspANI	GGCC	1 cut(s)	414
BspFNI	CGCG	1 cut(s)	317
BspLI	GGNNCC	1 cut(s)	120
BspMAI	CTGCAG	1 cut(s)	58
BspPI	GGATC	1 cut(s)	197
BspTNI	GGTCTC	1 cut(s)	433
BssMI	GATC	4 cut(s)	168, 202, 229, 379
Bst2UI	CCWGG	1 cut(s)	411
Bst4CI	ACNGT	2 cut(s)	267, 373
Bst6I	CTCTTC	1 cut(s)	213
BstBAI	YACGTR	1 cut(s)	70
BstC8I	GCNNGC	3 cut(s)	37, 110, 302
BstF5I	GGATG	2 cut(s)	169, 397
BstFNI	CGCG	1 cut(s)	317
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	4 cut(s)	171, 205, 232, 382
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	4 cut(s)	168, 202, 229, 379
BstMWI	GCNNNNNNNGC	1 cut(s)	249
BstNI	CCWGG	1 cut(s)	411
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	1 cut(s)	409
BstSFI	CTRYAG	2 cut(s)	54, 432
BstSNI	TACGTA	1 cut(s)	70
BstUI	CGCG	1 cut(s)	317
BstXI	CCANNNNNNTGG	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	414
BtsCI	GGATG	2 cut(s)	169, 397
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	3 cut(s)	37, 110, 302
CaiI	CAGNNNCTG	1 cut(s)	154
CfoI	GCGC	1 cut(s)	319
Cfr13I	GGNCC	1 cut(s)	118
Csp6I	GTAC	2 cut(s)	67, 136
CspCI	CAANNNNNGTGG	2 cut(s)	302, 337
CviAII	CATG	3 cut(s)	63, 253, 331
CviJI	RGCY	6 cut(s)	46, 108, 160, 337, 414, 444
CviKI_1	RGCY	6 cut(s)	46, 108, 160, 337, 414, 444
CviQI	GTAC	2 cut(s)	67, 136
DpnI	GATC	4 cut(s)	170, 204, 231, 381
DpnII	GATC	4 cut(s)	168, 202, 229, 379
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco105I	TACGTA	1 cut(s)	70
Eco31I	GGTCTC	1 cut(s)	433
Eco32I	GATATC	1 cut(s)	439
Eco47I	GGWCC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	118
EcoRI	GAATTC	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	409
EcoRV	GATATC	1 cut(s)	439
FaeI	CATG	3 cut(s)	66, 256, 334
FaiI	YATR	6 cut(s)	64, 73, 75, 254, 326, 332
FatI	CATG	3 cut(s)	62, 252, 330
FbaI	TGATCA	2 cut(s)	168, 379
FokI	GGATG	2 cut(s)	176, 404
FspBI	CTAG	1 cut(s)	478
GlaI	GCGC	1 cut(s)	318
GsaI	CCCAGC	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	414
HapII	CCGG	3 cut(s)	161, 389, 415
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	3 cut(s)	66, 256, 334
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HpaII	CCGG	3 cut(s)	161, 389, 415
HphI	GGTGA	1 cut(s)	385
Hpy166II	GTNNAC	1 cut(s)	263
Hpy188I	TCNGA	4 cut(s)	229, 352, 369, 424
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	1 cut(s)	263
HpyAV	CCTTC	2 cut(s)	121, 389
HpyCH4III	ACNGT	2 cut(s)	267, 373
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	5 cut(s)	29, 56, 252, 300, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	249
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	3 cut(s)	66, 256, 334
HspAI	GCGC	1 cut(s)	317
Ksp22I	TGATCA	2 cut(s)	168, 379
Kzo9I	GATC	4 cut(s)	168, 202, 229, 379
LmnI	GCTCC	1 cut(s)	100
MaeI	CTAG	1 cut(s)	478
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	4 cut(s)	170, 204, 231, 381
MboI	GATC	4 cut(s)	168, 202, 229, 379
MboII	GAAGA	2 cut(s)	227, 230
MluCI	AATT	4 cut(s)	19, 191, 223, 275
MmeI	TCCRAC	3 cut(s)	122, 347, 402
MnlI	CCTC	4 cut(s)	109, 251, 276, 418
MseI	TTAA	3 cut(s)	18, 104, 458
MspI	CCGG	3 cut(s)	161, 389, 415
MspR9I	CCNGG	1 cut(s)	411
Mva1269I	GAATGC	1 cut(s)	245
MvaI	CCWGG	1 cut(s)	411
MvnI	CGCG	1 cut(s)	317
MwoI	GCNNNNNNNGC	1 cut(s)	249
NdeII	GATC	4 cut(s)	168, 202, 229, 379
NlaIII	CATG	3 cut(s)	66, 256, 334
NlaIV	GGNNCC	1 cut(s)	120
NspI	RCATGY	1 cut(s)	334
PciI	ACATGT	1 cut(s)	330
PctI	GAATGC	1 cut(s)	245
Ppu21I	YACGTR	1 cut(s)	70
PpuMI	RGGWCCY	1 cut(s)	118
PscI	ACATGT	1 cut(s)	330
PshBI	ATTAAT	1 cut(s)	18
Psp5II	RGGWCCY	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	409
PspFI	CCCAGC	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	409
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	118
PspPPI	RGGWCCY	1 cut(s)	118
PstI	CTGCAG	1 cut(s)	58
PstNI	CAGNNNCTG	1 cut(s)	154
RsaI	GTAC	2 cut(s)	68, 137
RsaNI	GTAC	2 cut(s)	67, 136
SaqAI	TTAA	3 cut(s)	18, 104, 458
Sau3AI	GATC	4 cut(s)	168, 202, 229, 379
Sau96I	GGNCC	1 cut(s)	118
ScaI	AGTACT	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	411
SetI	ASST	5 cut(s)	72, 262, 400, 429, 458
SfcI	CTRYAG	2 cut(s)	54, 432
SinI	GGWCC	1 cut(s)	118
SnaBI	TACGTA	1 cut(s)	70
Sse9I	AATT	4 cut(s)	19, 191, 223, 275
SspMI	CTAG	1 cut(s)	478
StyD4I	CCNGG	1 cut(s)	409
TaaI	ACNGT	2 cut(s)	267, 373
TaiI	ACGT	1 cut(s)	72
TasI	AATT	4 cut(s)	19, 191, 223, 275
TatI	WGTACW	1 cut(s)	135
Tru1I	TTAA	3 cut(s)	18, 104, 458
Tru9I	TTAA	3 cut(s)	18, 104, 458
TscAI	CASTG	1 cut(s)	58
TspDTI	ATGAA	2 cut(s)	252, 408
TspRI	CASTG	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	118
VspI	ATTAAT	1 cut(s)	18
XapI	RAATTY	2 cut(s)	223, 275
XceI	RCATGY	1 cut(s)	334
XspI	CTAG	1 cut(s)	478
ZrmI	AGTACT	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.