Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004301

Physical Location & Seq

Genomic Coordinates Reverse (-)

61186954 .. 61187669

Gene Structure 716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020118

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTCAATATCATTGCTTTTTTCTGGCATTATGATCTTAGGGGTGATGCTCATTTGCTTTGTAATTTACATTGTATTTACAGTAGCATGGTACTTATATGGTAGGCAAATACTATCTGCTCCAACATTAAGCCAGCAGGACCCAGCCAAGGAGAAGTACTTTAGTTACCAGAAACTGAAGCCGGATGTGATCACATTCAACTACAAGAAAGAATTGAGTGATGATCCAAATCACGAAGAAGAGAATTCTGATCAAAATGAATGCGTGGTGTGCTTGAGAGGTTTACAGAATGAGGAATTTGTGAGGCAACTTCCAAAATGCAAGCACACATTCCACGCGCCTTGTATAGACATGTGGCTCTACTCTCATTCTGATTGCCCCATCTGTCGGACGGTGATTGATCAGTTGCCGGATGAAGGTGCATTTACACCAGGCCGGAAGTCGGAGGGAAACATTGATATGTTTGCAATTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

159

Amino Acids

18.24

Weight (kDa)

5.31

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	86 - 130	6.9e-13	Ring finger domain
zf-rbx1	PF12678	86 - 130	2e-08	RING-H2 zinc finger domain
zf-RING_11	PF17123	87 - 116	6.9e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	87 - 129	1e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05280
fragaria_vesca	FvH4_1g08250
malus_domestica	MD01G1126200.v1.1 MD02G1086800.v1.1 MD07G1195700.v1.1 MD07G1195800.v1.1 MD07G1196000.v1.1 MD07G1196100.v1.1 MD15G1214000.v1.1
prunus_persica	Prupe.2G233100_v2.0.a1 Prupe.3G043300_v2.0.a1 Prupe.7G203000_v2.0.a1
pyrus_communis	pycom01g15190 pycom09g10280 pycom15g19020
rosa_chinensis	RchiOBHm_Chr2g0094301 RchiOBHm_Chr2g0144911
rosa_laevigata	RLG00000016475 RLG00000020118
rosa_multiflora	Rmu_sc0002354.1_g000011 Rmu_sc0003819.1_g000026
rosa_roxburghii	Rroxscaffold_2G00147280
rosa_rugosa	Rorug02G0042800
rosa_samantha	Rh2AG090600 Rh2AG442000 Rh2BG090500 Rh2BG452600 Rh2CG093000 Rh2CG429300 Rh2DG089500 Rh2DG462500
rosa_wichuraiana	Rw2G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	338
AclWI	GGATC	1 cut(s)	218
AcsI	RAATTY	2 cut(s)	244, 296
AcuI	CTGAAG	1 cut(s)	197
AfaI	GTAC	2 cut(s)	92, 158
AfiI	CCNNNNNNNGG	4 cut(s)	148, 387, 416, 442
AflIII	ACRYGT	1 cut(s)	351
AgsI	TTSAA	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	430
AlwI	GGATC	1 cut(s)	218
AlwNI	CAGNNNCTG	1 cut(s)	175
AoxI	GGCC	1 cut(s)	433
ApoI	RAATTY	2 cut(s)	244, 296
AspLEI	GCGC	1 cut(s)	340
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	2 cut(s)	55, 406
AvaII	GGWCC	1 cut(s)	139
BccI	CCATC	1 cut(s)	389
BciT130I	CCWGG	1 cut(s)	432
BclI	TGATCA	3 cut(s)	189, 250, 400
BmcAI	AGTACT	1 cut(s)	158
Bme1390I	CCNGG	1 cut(s)	432
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	432
BmsI	GCATC	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	295
BsaBI	GATNNNNATC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 387, 416, 442
Bse3DI	GCAATG	1 cut(s)	11
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	2 cut(s)	190, 418
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	4 cut(s)	148, 387, 416, 442
BseMI	GCAATG	1 cut(s)	11
BseYI	CCCAGC	1 cut(s)	142
Bsh1236I	CGCG	1 cut(s)	338
BshFI	GGCC	1 cut(s)	435
BsiSI	CCGG	3 cut(s)	182, 410, 436
BslI	CCNNNNNNNGG	4 cut(s)	148, 387, 416, 442
BsmI	GAATGC	1 cut(s)	266
BsnI	GGCC	1 cut(s)	435
Bsp143I	GATC	5 cut(s)	33, 189, 223, 250, 400
BspANI	GGCC	1 cut(s)	435
BspFNI	CGCG	1 cut(s)	338
BspLI	GGNNCC	1 cut(s)	141
BspPI	GGATC	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	5 cut(s)	33, 189, 223, 250, 400
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	2 cut(s)	82, 394
Bst6I	CTCTTC	1 cut(s)	234
BstC8I	GCNNGC	2 cut(s)	134, 323
BstDEI	CTNAG	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	190, 418
BstFNI	CGCG	1 cut(s)	338
BstHHI	GCGC	1 cut(s)	340
BstKTI	GATC	5 cut(s)	36, 192, 226, 253, 403
BstMBI	GATC	5 cut(s)	33, 189, 223, 250, 400
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstNI	CCWGG	1 cut(s)	432
BstNSI	RCATGY	1 cut(s)	355
BstSCI	CCNGG	1 cut(s)	430
BstUI	CGCG	1 cut(s)	338
BsuRI	GGCC	1 cut(s)	435
BtsCI	GGATG	2 cut(s)	190, 418
Cac8I	GCNNGC	2 cut(s)	134, 323
CaiI	CAGNNNCTG	1 cut(s)	175
CfoI	GCGC	1 cut(s)	340
Cfr13I	GGNCC	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	91, 157
CspCI	CAANNNNNGTGG	2 cut(s)	323, 358
CviAII	CATG	2 cut(s)	87, 352
CviJI	RGCY	5 cut(s)	132, 146, 181, 358, 435
CviKI_1	RGCY	5 cut(s)	132, 146, 181, 358, 435
CviQI	GTAC	2 cut(s)	91, 157
DdeI	CTNAG	1 cut(s)	37
DpnI	GATC	5 cut(s)	35, 191, 225, 252, 402
DpnII	GATC	5 cut(s)	33, 189, 223, 250, 400
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	139
EcoRI	GAATTC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	2 cut(s)	90, 355
FaiI	YATR	7 cut(s)	32, 88, 97, 99, 347, 353, 461
FatI	CATG	2 cut(s)	86, 351
FbaI	TGATCA	3 cut(s)	189, 250, 400
FokI	GGATG	2 cut(s)	197, 425
GlaI	GCGC	1 cut(s)	339
GsaI	CCCAGC	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	435
HapII	CCGG	3 cut(s)	182, 410, 436
HhaI	GCGC	1 cut(s)	340
Hin1II	CATG	2 cut(s)	90, 355
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HpaII	CCGG	3 cut(s)	182, 410, 436
HphI	GGTGA	2 cut(s)	55, 406
Hpy166II	GTNNAC	1 cut(s)	284
Hpy188I	TCNGA	4 cut(s)	250, 373, 390, 445
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	1 cut(s)	284
HpyAV	CCTTC	1 cut(s)	410
HpyCH4III	ACNGT	2 cut(s)	82, 394
HpyCH4V	TGCA	3 cut(s)	321, 422, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
HpyF3I	CTNAG	1 cut(s)	37
Hsp92II	CATG	2 cut(s)	90, 355
HspAI	GCGC	1 cut(s)	338
Ksp22I	TGATCA	3 cut(s)	189, 250, 400
Kzo9I	GATC	5 cut(s)	33, 189, 223, 250, 400
LmnI	GCTCC	1 cut(s)	124
LweI	GCATC	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	5 cut(s)	35, 191, 225, 252, 402
MboI	GATC	5 cut(s)	33, 189, 223, 250, 400
MboII	GAAGA	2 cut(s)	248, 251
MluCI	AATT	5 cut(s)	63, 212, 244, 296, 468
MmeI	TCCRAC	3 cut(s)	146, 368, 423
MnlI	CCTC	4 cut(s)	272, 286, 297, 439
MseI	TTAA	1 cut(s)	128
MslI	CAYNNNNRTG	1 cut(s)	458
MspI	CCGG	3 cut(s)	182, 410, 436
MspR9I	CCNGG	1 cut(s)	432
Mva1269I	GAATGC	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	432
MvnI	CGCG	1 cut(s)	338
MwoI	GCNNNNNNNGC	1 cut(s)	270
NdeII	GATC	5 cut(s)	33, 189, 223, 250, 400
NlaIII	CATG	2 cut(s)	90, 355
NlaIV	GGNNCC	1 cut(s)	141
NspI	RCATGY	1 cut(s)	355
PciI	ACATGT	1 cut(s)	351
PctI	GAATGC	1 cut(s)	266
PpuMI	RGGWCCY	1 cut(s)	139
PscI	ACATGT	1 cut(s)	351
Psp5II	RGGWCCY	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	430
PspFI	CCCAGC	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	139
PspPPI	RGGWCCY	1 cut(s)	139
PstNI	CAGNNNCTG	1 cut(s)	175
RsaI	GTAC	2 cut(s)	92, 158
RsaNI	GTAC	2 cut(s)	91, 157
RseI	CAYNNNNRTG	1 cut(s)	458
SaqAI	TTAA	1 cut(s)	128
Sau3AI	GATC	5 cut(s)	33, 189, 223, 250, 400
Sau96I	GGNCC	1 cut(s)	139
ScaI	AGTACT	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	432
SetI	ASST	2 cut(s)	283, 421
SfaNI	GCATC	1 cut(s)	36
SinI	GGWCC	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	458
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
Sse9I	AATT	5 cut(s)	63, 212, 244, 296, 468
StyD4I	CCNGG	1 cut(s)	430
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	82, 394
TasI	AATT	5 cut(s)	63, 212, 244, 296, 468
TatI	WGTACW	1 cut(s)	156
Tru1I	TTAA	1 cut(s)	128
Tru9I	TTAA	1 cut(s)	128
TspDTI	ATGAA	2 cut(s)	273, 429
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	2 cut(s)	244, 296
XceI	RCATGY	1 cut(s)	355
ZrmI	AGTACT	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.