Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004301

Physical Location & Seq

Genomic Coordinates Forward (+)

85179758 .. 85180342

Gene Structure 585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00147280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCGTTCCTACATGGCACTAACGCCCTCTCCGAGCCCCTTTTTGCCGCCGCCACCCCCGCCTCCGGCGACCAAAAGCACCAGCTTGCCTATGTTGTATTATGGCCTCATAGTTGTTGGAACTGCCGCTATTGTTCTAGCCATGTACAATTTCATCTTCATCAAATGGTCCGCCCCGCGCCACCCCCCATCATCACCGAGAAATGTTAGGTCCAACGCTTTTGTTGAGGCTGCAAGGTCAGCAAGGAGCAGGAGCTTTGAGAACTTGGACAGCTTCAAGTACAAGAAACAGAAGGAGGGGTCAGTGGCTCAAGAACAAGGTCAAGTACTGATCGATTATGAATGTGCGGTTTGCTTGTCGGTGTTTGAAGATGGAGAAGAGGTAAGGAAGTTGCCTAGCTGCAAGCACTCGTTTCATGCTCCTTGCATAGATATGTGGCTTTACTCTCACTCAGATTGCCCGCTCTGCCGGGCAACGGTGCCAGTCGTTTCTTGGTGCCACCGGGAGTTAACCACTACTACGCCTGAGGAGCATTCCAGAGAAGTCCTGCTGGTTTCTAGCAGCATCACAAGTTCGCCGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

194

Amino Acids

21.6

Weight (kDa)

8.16

Isoelectric Point (pI)

72.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	114 - 157	1.9e-13	Ring finger domain
zf-RING_11	PF17123	114 - 143	1.7e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	114 - 156	2.8e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	115 - 156	2.7e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	124 - 157	2.4e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05280
fragaria_vesca	FvH4_1g08250
malus_domestica	MD01G1126200.v1.1 MD02G1086800.v1.1 MD07G1195700.v1.1 MD07G1195800.v1.1 MD07G1196000.v1.1 MD07G1196100.v1.1 MD15G1214000.v1.1
prunus_persica	Prupe.2G233100_v2.0.a1 Prupe.3G043300_v2.0.a1 Prupe.7G203000_v2.0.a1
pyrus_communis	pycom01g15190 pycom09g10280 pycom15g19020
rosa_chinensis	RchiOBHm_Chr2g0094301 RchiOBHm_Chr2g0144911
rosa_laevigata	RLG00000016475 RLG00000020118
rosa_multiflora	Rmu_sc0002354.1_g000011 Rmu_sc0003819.1_g000026
rosa_roxburghii	Rroxscaffold_2G00147280
rosa_rugosa	Rorug02G0042800
rosa_samantha	Rh2AG090600 Rh2AG442000 Rh2BG090500 Rh2BG452600 Rh2CG093000 Rh2CG429300 Rh2DG089500 Rh2DG462500
rosa_wichuraiana	Rw2G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	478, 495
AccBSI	CCGCTC	1 cut(s)	463
AccII	CGCG	1 cut(s)	178
AciI	CCGC	8 cut(s)	47, 50, 59, 126, 171, 176, 347, 461
AfaI	GTAC	3 cut(s)	146, 281, 327
AfiI	CCNNNNNNNGG	2 cut(s)	64, 475
AgsI	TTSAA	2 cut(s)	277, 368
AluBI	AGCT	4 cut(s)	84, 255, 273, 399
AluI	AGCT	4 cut(s)	84, 255, 273, 399
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	3 cut(s)	230, 399, 561
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	2 cut(s)	168, 210
AsuC2I	CCSGG	2 cut(s)	470, 503
AsuHPI	GGTGA	1 cut(s)	186
AvaII	GGWCC	2 cut(s)	168, 210
AxyI	CCTNAGG	1 cut(s)	525
BanI	GGYRCC	2 cut(s)	478, 495
BanII	GRGCYC	1 cut(s)	38
BbvI	GCAGC	3 cut(s)	217, 386, 573
BccI	CCATC	2 cut(s)	196, 365
BcnI	CCSGG	2 cut(s)	470, 503
BfaI	CTAG	3 cut(s)	137, 396, 558
BisI	GCNGC	6 cut(s)	47, 50, 126, 231, 400, 562
BlsI	GCNGC	6 cut(s)	48, 51, 127, 232, 401, 563
BmcAI	AGTACT	1 cut(s)	327
Bme1390I	CCNGG	2 cut(s)	470, 503
Bme18I	GGWCC	2 cut(s)	168, 210
BmgT120I	GGNCC	2 cut(s)	168, 210
BmiI	GGNNCC	2 cut(s)	480, 497
BmrFI	CCNGG	2 cut(s)	470, 503
BmsI	GCATC	1 cut(s)	573
BpuEI	CTTGAG	1 cut(s)	294
BpuMI	CCSGG	2 cut(s)	470, 503
Bsa29I	ATCGAT	1 cut(s)	333
BsaXI	ACNNNNNCTCC	4 cut(s)	13, 43, 366, 396
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 475
Bse118I	RCCGGY	1 cut(s)	577
Bse1I	ACTGG	1 cut(s)	482
Bse21I	CCTNAGG	1 cut(s)	525
BseCI	ATCGAT	1 cut(s)	333
BseLI	CCNNNNNNNGG	2 cut(s)	64, 475
BseMII	CTCAG	2 cut(s)	465, 516
BseNI	ACTGG	1 cut(s)	482
BseRI	GAGGAG	1 cut(s)	542
BseXI	GCAGC	3 cut(s)	217, 386, 573
Bsh1236I	CGCG	1 cut(s)	178
BshFI	GGCC	1 cut(s)	105
BshNI	GGYRCC	2 cut(s)	478, 495
BshVI	ATCGAT	1 cut(s)	333
BsiSI	CCGG	4 cut(s)	65, 469, 502, 578
BslI	CCNNNNNNNGG	2 cut(s)	64, 475
BsmI	GAATGC	1 cut(s)	532
BsnI	GGCC	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp1407I	TGTACA	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	330
BspACI	CCGC	8 cut(s)	47, 50, 59, 126, 171, 176, 347, 461
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	2 cut(s)	464, 517
BspDI	ATCGAT	1 cut(s)	333
BspFNI	CGCG	1 cut(s)	178
BspLI	GGNNCC	2 cut(s)	480, 497
BspT107I	GGYRCC	2 cut(s)	478, 495
BsrBI	CCGCTC	1 cut(s)	463
BsrFI	RCCGGY	1 cut(s)	577
BsrGI	TGTACA	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	482
BssAI	RCCGGY	1 cut(s)	577
BssMI	GATC	1 cut(s)	330
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	1 cut(s)	372
BstAUI	TGTACA	1 cut(s)	144
BstC8I	GCNNGC	3 cut(s)	86, 404, 461
BstDEI	CTNAG	2 cut(s)	451, 525
BstFNI	CGCG	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	1 cut(s)	333
BstMBI	GATC	1 cut(s)	330
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 239, 465, 529
BstSCI	CCNGG	2 cut(s)	468, 501
BstUI	CGCG	1 cut(s)	178
BstV1I	GCAGC	3 cut(s)	217, 386, 573
Bsu15I	ATCGAT	1 cut(s)	333
Bsu36I	CCTNAGG	1 cut(s)	525
BsuRI	GGCC	1 cut(s)	105
BsuTUI	ATCGAT	1 cut(s)	333
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	3 cut(s)	86, 404, 461
CfoI	GCGC	1 cut(s)	180
Cfr10I	RCCGGY	1 cut(s)	577
Cfr13I	GGNCC	2 cut(s)	168, 210
ClaI	ATCGAT	1 cut(s)	333
Csp6I	GTAC	3 cut(s)	145, 280, 326
CviAII	CATG	3 cut(s)	13, 142, 416
CviQI	GTAC	3 cut(s)	145, 280, 326
DdeI	CTNAG	2 cut(s)	451, 525
DpnI	GATC	1 cut(s)	332
DpnII	GATC	1 cut(s)	330
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
EciI	GGCGGA	1 cut(s)	160
Eco24I	GRGCYC	1 cut(s)	38
Eco47I	GGWCC	2 cut(s)	168, 210
Eco81I	CCTNAGG	1 cut(s)	525
EcoT38I	GRGCYC	1 cut(s)	38
FaeI	CATG	3 cut(s)	16, 145, 419
FaiI	YATR	9 cut(s)	14, 92, 102, 110, 143, 339, 417, 428, 434
FatI	CATG	3 cut(s)	12, 141, 415
FauI	CCCGC	3 cut(s)	66, 183, 468
Fnu4HI	GCNGC	6 cut(s)	47, 50, 126, 231, 400, 562
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	6 cut(s)	47, 50, 126, 231, 400, 562
FspBI	CTAG	3 cut(s)	137, 396, 558
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	6 cut(s)	47, 50, 126, 231, 400, 562
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	4 cut(s)	65, 469, 502, 578
HhaI	GCGC	1 cut(s)	180
Hin1II	CATG	3 cut(s)	16, 145, 419
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HincII	GTYRAC	1 cut(s)	510
HindII	GTYRAC	1 cut(s)	510
HpaI	GTTAAC	1 cut(s)	510
HpaII	CCGG	4 cut(s)	65, 469, 502, 578
HphI	GGTGA	1 cut(s)	186
Hpy166II	GTNNAC	1 cut(s)	510
Hpy188I	TCNGA	2 cut(s)	33, 454
Hpy188III	TCNNGA	2 cut(s)	311, 537
Hpy8I	GTNNAC	1 cut(s)	510
HpyAV	CCTTC	1 cut(s)	286
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4V	TGCA	3 cut(s)	233, 402, 426
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 239, 465, 529
HpyF3I	CTNAG	2 cut(s)	451, 525
Hsp92II	CATG	3 cut(s)	16, 145, 419
HspAI	GCGC	1 cut(s)	178
KspAI	GTTAAC	1 cut(s)	510
Kzo9I	GATC	1 cut(s)	330
LmnI	GCTCC	4 cut(s)	246, 252, 424, 529
Lsp1109I	GCAGC	3 cut(s)	217, 386, 573
LweI	GCATC	1 cut(s)	573
MaeI	CTAG	3 cut(s)	137, 396, 558
MalI	GATC	1 cut(s)	332
MbiI	CCGCTC	1 cut(s)	463
MboI	GATC	1 cut(s)	330
MboII	GAAGA	3 cut(s)	148, 380, 389
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	1 cut(s)	148
MmeI	TCCRAC	2 cut(s)	97, 237
MnlI	CCTC	7 cut(s)	37, 72, 116, 220, 289, 373, 520
MseI	TTAA	2 cut(s)	509, 583
MslI	CAYNNNNRTG	1 cut(s)	431
MspI	CCGG	4 cut(s)	65, 469, 502, 578
MspR9I	CCNGG	2 cut(s)	470, 503
Mva1269I	GAATGC	1 cut(s)	532
MvnI	CGCG	1 cut(s)	178
MwoI	GCNNNNNNNGC	4 cut(s)	58, 239, 465, 529
NciI	CCSGG	2 cut(s)	470, 503
NdeII	GATC	1 cut(s)	330
NlaIII	CATG	3 cut(s)	16, 145, 419
NlaIV	GGNNCC	2 cut(s)	480, 497
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PctI	GAATGC	1 cut(s)	532
PkrI	GCNGC	6 cut(s)	48, 51, 127, 232, 401, 563
PspN4I	GGNNCC	2 cut(s)	480, 497
PspPI	GGNCC	2 cut(s)	168, 210
RsaI	GTAC	3 cut(s)	146, 281, 327
RsaNI	GTAC	3 cut(s)	145, 280, 326
RseI	CAYNNNNRTG	1 cut(s)	431
SaqAI	TTAA	2 cut(s)	509, 583
SatI	GCNGC	6 cut(s)	47, 50, 126, 231, 400, 562
Sau3AI	GATC	1 cut(s)	330
Sau96I	GGNCC	2 cut(s)	168, 210
ScaI	AGTACT	1 cut(s)	327
ScrFI	CCNGG	2 cut(s)	470, 503
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	8 cut(s)	86, 212, 239, 257, 275, 322, 384, 401
SfaNI	GCATC	1 cut(s)	573
SinI	GGWCC	2 cut(s)	168, 210
SmiMI	CAYNNNNRTG	1 cut(s)	431
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
Sse9I	AATT	1 cut(s)	148
SsiI	CCGC	8 cut(s)	47, 50, 59, 126, 171, 176, 347, 461
SspMI	CTAG	3 cut(s)	137, 396, 558
StyD4I	CCNGG	2 cut(s)	468, 501
TaaI	ACNGT	1 cut(s)	478
TaqI	TCGA	1 cut(s)	333
TasI	AATT	1 cut(s)	148
TatI	WGTACW	3 cut(s)	144, 279, 325
TauI	GCSGC	3 cut(s)	49, 52, 128
Tru1I	TTAA	2 cut(s)	509, 583
Tru9I	TTAA	2 cut(s)	509, 583
TscAI	CASTG	1 cut(s)	309
TseI	GCWGC	3 cut(s)	230, 399, 561
TspDTI	ATGAA	4 cut(s)	142, 148, 354, 404
TspRI	CASTG	1 cut(s)	309
VpaK11BI	GGWCC	2 cut(s)	168, 210
XcmI	CCANNNNNNNNNTGG	1 cut(s)	489
XspI	CTAG	3 cut(s)	137, 396, 558
ZrmI	AGTACT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.