Rh2BG452600

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0004301
Physical Location & Seq
Reverse (-)
63837069 .. 63853525
16457 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG452600.1

Sequence Viewer

Length: 606 bp
ATGAACCTCGGAGAGGCTGTAGCATGGTACTTATATGGTAGGCAAATACTATCTGCTCCAACATTAAGCCAGCAGGAGGACCCAGCCAAGGAGAAGTACTTTAGTTACCAGAAACTGAAGCCGGATGTGATCACATTCAACTACAAGAAAGAATTGAGTGATGATCCAAATCACGAAGAAGAGAATTCTGATCAAAATGAATGCGTGGTGTGCTTAAGAGGTTTACAGAATGAGGAATTTGTGAGGCAACTGCCAAAATGCAAGCACACATTCCACGCGCCTTGTATAGACATGTGGCTCTACTCTCACTCTGATTGCCCCATCTGTCGGACGGTGATTGATCAGTCGCCTGATGAAGGTGCATTTACACCAGGCCGGAAGTCGGAGCACAGCCGCGATGATGCCGTACAACGTCCCACCGCTATCACCGATTACCTCAAGAGGTTACTTCAGCACAAGGAGCTCAAATTCAGAGTCCGAGGAAGTCAGATTCGCACTCCAAATCTTCATGTTCGACTCTGCATCTGCAACCGAAGAGCGTCTCTCTCACCATCGGCGAACCAGCTCATAAGCAATTCGAAAGTCCAAAGGTATGCTTCGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

201

Amino Acids

23.24

Weight (kDa)

8.39

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 66 - 110 1.1e-12 Ring finger domain
zf-rbx1 PF12678 66 - 110 3.1e-08 RING-H2 zinc finger domain
zf-RING_11 PF17123 67 - 96 1e-08 RING-like zinc finger
zf-C3HC4_2 PF13923 67 - 109 1.6e-07 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 278, 396
AciI CCGC 2 cut(s) 394, 420
AclWI GGATC 1 cut(s) 158
AcsI RAATTY 3 cut(s) 184, 236, 467
AcuI CTGAAG 2 cut(s) 137, 434
AfaI GTAC 3 cut(s) 29, 98, 408
AfiI CCNNNNNNNGG 6 cut(s) 13, 76, 88, 327, 356, 382
AflII CTTAAG 1 cut(s) 214
AflIII ACRYGT 1 cut(s) 291
AgsI TTSAA 1 cut(s) 139
AjnI CCWGG 1 cut(s) 370
AluBI AGCT 2 cut(s) 463, 565
AluI AGCT 2 cut(s) 463, 565
Alw21I GWGCWC 2 cut(s) 390, 465
Alw26I GTCTC 1 cut(s) 546
AlwI GGATC 1 cut(s) 158
AlwNI CAGNNNCTG 1 cut(s) 115
AoxI GGCC 1 cut(s) 373
ApoI RAATTY 3 cut(s) 184, 236, 467
ArsI GACNNNNNNTTYG 2 cut(s) 459, 491
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 1 cut(s) 79
AsuHPI GGTGA 3 cut(s) 346, 418, 540
AsuII TTCGAA 1 cut(s) 578
AvaII GGWCC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 465
Bbv12I GWGCWC 2 cut(s) 390, 465
BccI CCATC 2 cut(s) 329, 559
BceAI ACGGC 1 cut(s) 389
BciT130I CCWGG 1 cut(s) 372
BclI TGATCA 3 cut(s) 129, 190, 340
BcoDI GTCTC 1 cut(s) 546
BfmI CTRYAG 1 cut(s) 18
BfrI CTTAAG 1 cut(s) 214
BisI GCNGC 1 cut(s) 394
BlsI GCNGC 1 cut(s) 395
BmcAI AGTACT 1 cut(s) 98
Bme1390I CCNGG 1 cut(s) 372
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 372
BmsI GCATC 2 cut(s) 391, 531
BplI GAGNNNNNCTC 2 cut(s) 528, 560
Bpu14I TTCGAA 1 cut(s) 578
BpuEI CTTGAG 1 cut(s) 422
BsaBI GATNNNNATC 1 cut(s) 168
BsaJI CCNNGG 3 cut(s) 7, 87, 478
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 6 cut(s) 13, 76, 88, 327, 356, 382
Bse8I GATNNNNATC 1 cut(s) 168
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 3 cut(s) 7, 87, 478
BseGI GGATG 1 cut(s) 130
BseJI GATNNNNATC 1 cut(s) 168
BseLI CCNNNNNNNGG 6 cut(s) 13, 76, 88, 327, 356, 382
BseYI CCCAGC 1 cut(s) 82
Bsh1236I CGCG 2 cut(s) 278, 396
BshFI GGCC 1 cut(s) 375
BsiHKAI GWGCWC 2 cut(s) 390, 465
BsiSI CCGG 2 cut(s) 122, 376
BslFI GGGAC 1 cut(s) 399
BslI CCNNNNNNNGG 6 cut(s) 13, 76, 88, 327, 356, 382
BsmAI GTCTC 1 cut(s) 546
BsmBI CGTCTC 1 cut(s) 546
BsmFI GGGAC 1 cut(s) 399
BsmI GAATGC 1 cut(s) 206
BsnI GGCC 1 cut(s) 375
Bsp119I TTCGAA 1 cut(s) 578
Bsp1286I GDGCHC 2 cut(s) 390, 465
Bsp143I GATC 4 cut(s) 129, 163, 190, 340
BspACI CCGC 2 cut(s) 394, 420
BspANI GGCC 1 cut(s) 375
BspFNI CGCG 2 cut(s) 278, 396
BspLI GGNNCC 1 cut(s) 81
BspPI GGATC 1 cut(s) 158
BspQI GCTCTTC 1 cut(s) 529
BspT104I TTCGAA 1 cut(s) 578
BspTI CTTAAG 1 cut(s) 214
BssECI CCNNGG 3 cut(s) 7, 87, 478
BssMI GATC 4 cut(s) 129, 163, 190, 340
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 1 cut(s) 334
Bst6I CTCTTC 2 cut(s) 174, 529
BstAFI CTTAAG 1 cut(s) 214
BstBI TTCGAA 1 cut(s) 578
BstC8I GCNNGC 2 cut(s) 71, 263
BstENI CCTNNNNNAGG 2 cut(s) 11, 354
BstF5I GGATG 1 cut(s) 130
BstFNI CGCG 2 cut(s) 278, 396
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 4 cut(s) 132, 166, 193, 343
BstMAI GTCTC 1 cut(s) 546
BstMBI GATC 4 cut(s) 129, 163, 190, 340
BstMWI GCNNNNNNNGC 2 cut(s) 210, 460
BstNI CCWGG 1 cut(s) 372
BstNSI RCATGY 1 cut(s) 295
BstSCI CCNGG 1 cut(s) 370
BstSFI CTRYAG 1 cut(s) 18
BstUI CGCG 2 cut(s) 278, 396
BsuRI GGCC 1 cut(s) 375
BtgZI GCGATG 1 cut(s) 411
BtsCI GGATG 1 cut(s) 130
Cac8I GCNNGC 2 cut(s) 71, 263
CaiI CAGNNNCTG 1 cut(s) 115
CfoI GCGC 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 79
CseI GACGC 1 cut(s) 528
Csp6I GTAC 3 cut(s) 28, 97, 407
CspCI CAANNNNNGTGG 2 cut(s) 263, 298
CviAII CATG 3 cut(s) 24, 292, 509
CviJI RGCY 9 cut(s) 17, 69, 86, 121, 298, 375, 393, 463, 565
CviKI_1 RGCY 9 cut(s) 17, 69, 86, 121, 298, 375, 393, 463, 565
CviQI GTAC 3 cut(s) 28, 97, 407
DpnI GATC 4 cut(s) 131, 165, 192, 342
DpnII GATC 4 cut(s) 129, 163, 190, 340
Eam1104I CTCTTC 2 cut(s) 174, 529
EarI CTCTTC 2 cut(s) 174, 529
Ecl136II GAGCTC 1 cut(s) 463
Eco130I CCWWGG 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 465
Eco47I GGWCC 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 463
Eco57I CTGAAG 2 cut(s) 137, 434
EcoICRI GAGCTC 1 cut(s) 463
EcoNI CCTNNNNNAGG 2 cut(s) 11, 354
EcoO109I RGGNCCY 1 cut(s) 79
EcoRI GAATTC 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 370
EcoT14I CCWWGG 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 87
Esp3I CGTCTC 1 cut(s) 546
FaeI CATG 3 cut(s) 27, 295, 512
FaiI YATR 8 cut(s) 25, 34, 36, 287, 293, 510, 569, 594
FalI AAGNNNNNCTT 1 cut(s) 580
FaqI GGGAC 1 cut(s) 399
FatI CATG 3 cut(s) 23, 291, 508
FbaI TGATCA 3 cut(s) 129, 190, 340
Fnu4HI GCNGC 1 cut(s) 394
FokI GGATG 1 cut(s) 137
FriOI GRGCYC 1 cut(s) 465
Fsp4HI GCNGC 1 cut(s) 394
GlaI GCGC 1 cut(s) 279
GluI GCNGC 1 cut(s) 394
GsaI CCCAGC 1 cut(s) 86
HaeIII GGCC 1 cut(s) 375
HapII CCGG 2 cut(s) 122, 376
HgaI GACGC 1 cut(s) 528
HhaI GCGC 1 cut(s) 280
Hin1II CATG 3 cut(s) 27, 295, 512
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HinfI GANTC 3 cut(s) 474, 490, 516
HpaII CCGG 2 cut(s) 122, 376
HphI GGTGA 3 cut(s) 346, 418, 540
Hpy166II GTNNAC 1 cut(s) 224
Hpy188I TCNGA 8 cut(s) 11, 190, 313, 330, 385, 473, 479, 489
Hpy188III TCNNGA 2 cut(s) 173, 439
Hpy8I GTNNAC 1 cut(s) 224
HpyAV CCTTC 1 cut(s) 350
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4IV ACGT 1 cut(s) 412
HpyCH4V TGCA 4 cut(s) 261, 362, 522, 528
HpyF10VI GCNNNNNNNGC 2 cut(s) 210, 460
HpySE526I ACGT 1 cut(s) 412
Hsp92II CATG 3 cut(s) 27, 295, 512
HspAI GCGC 1 cut(s) 278
Ksp22I TGATCA 3 cut(s) 129, 190, 340
Kzo9I GATC 4 cut(s) 129, 163, 190, 340
LguI GCTCTTC 1 cut(s) 529
LmnI GCTCC 3 cut(s) 61, 385, 460
LweI GCATC 2 cut(s) 391, 531
MaeII ACGT 1 cut(s) 412
MaeIII GTNAC 2 cut(s) 104, 444
MalI GATC 4 cut(s) 131, 165, 192, 342
MboI GATC 4 cut(s) 129, 163, 190, 340
MboII GAAGA 4 cut(s) 188, 191, 497, 546
MhlI GDGCHC 2 cut(s) 390, 465
MluCI AATT 5 cut(s) 152, 184, 236, 467, 574
MlyI GAGTC 2 cut(s) 483, 510
MmeI TCCRAC 3 cut(s) 83, 308, 363
MnlI CCTC 9 cut(s) 7, 17, 70, 212, 226, 237, 435, 446, 473
MseI TTAA 2 cut(s) 65, 215
MspCI CTTAAG 1 cut(s) 214
MspI CCGG 2 cut(s) 122, 376
MspR9I CCNGG 1 cut(s) 372
Mva1269I GAATGC 1 cut(s) 206
MvaI CCWGG 1 cut(s) 372
MvnI CGCG 2 cut(s) 278, 396
MwoI GCNNNNNNNGC 2 cut(s) 210, 460
NdeII GATC 4 cut(s) 129, 163, 190, 340
NlaIII CATG 3 cut(s) 27, 295, 512
NlaIV GGNNCC 1 cut(s) 81
NspI RCATGY 1 cut(s) 295
NspV TTCGAA 1 cut(s) 578
PciI ACATGT 1 cut(s) 291
PciSI GCTCTTC 1 cut(s) 529
PctI GAATGC 1 cut(s) 206
PfeI GAWTC 1 cut(s) 490
PkrI GCNGC 1 cut(s) 395
PleI GAGTC 2 cut(s) 482, 510
PpsI GAGTC 2 cut(s) 482, 510
PpuMI RGGWCCY 1 cut(s) 79
PscI ACATGT 1 cut(s) 291
Psp124BI GAGCTC 1 cut(s) 465
Psp5II RGGWCCY 1 cut(s) 79
Psp6I CCWGG 1 cut(s) 370
PspFI CCCAGC 1 cut(s) 82
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 1 cut(s) 81
PspPI GGNCC 1 cut(s) 79
PspPPI RGGWCCY 1 cut(s) 79
PstNI CAGNNNCTG 1 cut(s) 115
RsaI GTAC 3 cut(s) 29, 98, 408
RsaNI GTAC 3 cut(s) 28, 97, 407
SacI GAGCTC 1 cut(s) 465
SapI GCTCTTC 1 cut(s) 529
SaqAI TTAA 2 cut(s) 65, 215
SatI GCNGC 1 cut(s) 394
Sau3AI GATC 4 cut(s) 129, 163, 190, 340
Sau96I GGNCC 1 cut(s) 79
ScaI AGTACT 1 cut(s) 98
SchI GAGTC 2 cut(s) 483, 510
ScrFI CCNGG 1 cut(s) 372
SduI GDGCHC 2 cut(s) 390, 465
SetI ASST 9 cut(s) 9, 223, 361, 415, 438, 446, 465, 567, 593
SfaNI GCATC 2 cut(s) 391, 531
SfcI CTRYAG 1 cut(s) 18
SfuI TTCGAA 1 cut(s) 578
SinI GGWCC 1 cut(s) 79
SmlI CTYRAG 2 cut(s) 214, 437
SmoI CTYRAG 2 cut(s) 214, 437
Sse9I AATT 5 cut(s) 152, 184, 236, 467, 574
SsiI CCGC 2 cut(s) 394, 420
SstI GAGCTC 1 cut(s) 465
StyD4I CCNGG 1 cut(s) 370
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 1 cut(s) 334
TaiI ACGT 1 cut(s) 415
TaqI TCGA 3 cut(s) 514, 578, 599
TasI AATT 5 cut(s) 152, 184, 236, 467, 574
TatI WGTACW 1 cut(s) 96
TauI GCSGC 1 cut(s) 396
TfiI GAWTC 1 cut(s) 490
Tru1I TTAA 2 cut(s) 65, 215
Tru9I TTAA 2 cut(s) 65, 215
TspDTI ATGAA 4 cut(s) 17, 213, 369, 497
Vha464I CTTAAG 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 79
XagI CCTNNNNNAGG 2 cut(s) 11, 354
XapI RAATTY 3 cut(s) 184, 236, 467
XceI RCATGY 1 cut(s) 295
ZrmI AGTACT 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.