Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004301

Physical Location & Seq

Genomic Coordinates Forward (+)

25637676 .. 25638854

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G233100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCTAAAATTGTCTCTGACCCCAAATTGTACATTCTTCTGGTGGCTTTGACTTTGAGCTCGGCTGTGCTTGTGGTCACACTCTACCATTGCATCATCATTTGTTGCTGCAACCGCAACCCGCCACGACGACAAATACAACACCGTTTGAGGCCTAACATGCAAGGGATCACAAGCTTCCTAGCAGCAAGCAGCATGGAGGCTTCCTCAGTGGCCCAACTCATTCCGGCCCACAAGTTTCAAAAGGGTGTGGGCTTGGTCTTGGTGGGAGATGGCATGTGTGCTGTGTGCCTGAGTGAAATTGAAGAGGGCGAAGAATTTCGAACCTTGCCGGAATGCATGCACTCGTTTCACGTTCCATGCATTGACATGTGGCTGTATTCCCATCCGAGTTGCCCAATTTGCCGCACAGATGCCACGCCGCGGAAGCCTGCAGTTAAGCGCTCGCCGGATTATGGGTCCGGTGGGCTGGAGAGGCCACAGGAGTCCATAATTTTGCAAGACATTGTTGTTATGCAATCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

176

Amino Acids

19.31

Weight (kDa)

7.55

Isoelectric Point (pI)

63.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05280
fragaria_vesca	FvH4_1g08250
malus_domestica	MD01G1126200.v1.1 MD02G1086800.v1.1 MD07G1195700.v1.1 MD07G1195800.v1.1 MD07G1196000.v1.1 MD07G1196100.v1.1 MD15G1214000.v1.1
prunus_persica	Prupe.2G233100_v2.0.a1 Prupe.3G043300_v2.0.a1 Prupe.7G203000_v2.0.a1
pyrus_communis	pycom01g15190 pycom09g10280 pycom15g19020
rosa_chinensis	RchiOBHm_Chr2g0094301 RchiOBHm_Chr2g0144911
rosa_laevigata	RLG00000016475 RLG00000020118
rosa_multiflora	Rmu_sc0002354.1_g000011 Rmu_sc0003819.1_g000026
rosa_roxburghii	Rroxscaffold_2G00147280
rosa_rugosa	Rorug02G0042800
rosa_samantha	Rh2AG090600 Rh2AG442000 Rh2BG090500 Rh2BG452600 Rh2CG093000 Rh2CG429300 Rh2DG089500 Rh2DG462500
rosa_wichuraiana	Rw2G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	424
AciI	CCGC	5 cut(s)	115, 122, 406, 422, 424
AclWI	GGATC	1 cut(s)	176
AcsI	RAATTY	1 cut(s)	317
AfaI	GTAC	1 cut(s)	32
AfeI	AGCGCT	1 cut(s)	443
AfiI	CCNNNNNNNGG	2 cut(s)	423, 455
AflIII	ACRYGT	1 cut(s)	369
AgsI	TTSAA	2 cut(s)	242, 305
AluBI	AGCT	3 cut(s)	60, 177, 525
AluI	AGCT	3 cut(s)	60, 177, 525
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	19
AlwI	GGATC	1 cut(s)	176
Aor51HI	AGCGCT	1 cut(s)	443
AoxI	GGCC	4 cut(s)	152, 213, 228, 476
ApeKI	GCWGC	3 cut(s)	108, 185, 192
ApoI	RAATTY	1 cut(s)	317
Asp700I	GAANNNNTTC	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	444
AspS9I	GGNCC	3 cut(s)	214, 229, 459
AsuII	TTCGAA	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	459
BanII	GRGCYC	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	62
BbvI	GCAGC	3 cut(s)	95, 197, 204
BccI	CCATC	2 cut(s)	266, 393
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	3 cut(s)	182, 522, 526
BfmI	CTRYAG	1 cut(s)	432
BfoI	RGCGCY	1 cut(s)	445
BisI	GCNGC	5 cut(s)	109, 186, 193, 406, 422
BlsI	GCNGC	5 cut(s)	110, 187, 194, 407, 423
Bme18I	GGWCC	1 cut(s)	459
BmgT120I	GGNCC	3 cut(s)	214, 229, 459
BmiI	GGNNCC	1 cut(s)	460
BmsI	GCATC	2 cut(s)	102, 403
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
BpmI	CTGGAG	1 cut(s)	491
Bpu14I	TTCGAA	1 cut(s)	322
BsaJI	CCNNGG	1 cut(s)	422
BsaWI	WCCGGW	1 cut(s)	461
Bsc4I	CCNNNNNNNGG	2 cut(s)	423, 455
Bse3DI	GCAATG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	422
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	2 cut(s)	423, 455
BseMI	GCAATG	1 cut(s)	88
BseMII	CTCAG	2 cut(s)	222, 284
BseXI	GCAGC	3 cut(s)	95, 197, 204
Bsh1236I	CGCG	1 cut(s)	424
BshFI	GGCC	4 cut(s)	154, 215, 230, 478
BsiHKAI	GWGCWC	1 cut(s)	62
BsiSI	CCGG	4 cut(s)	227, 332, 449, 462
BslI	CCNNNNNNNGG	2 cut(s)	423, 455
BsmAI	GTCTC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	341
BsnI	GGCC	4 cut(s)	154, 215, 230, 478
Bsp119I	TTCGAA	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp1407I	TGTACA	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	168
BspACI	CCGC	5 cut(s)	115, 122, 406, 422, 424
BspANI	GGCC	4 cut(s)	154, 215, 230, 478
BspCNI	CTCAG	2 cut(s)	221, 285
BspFNI	CGCG	1 cut(s)	424
BspLI	GGNNCC	1 cut(s)	460
BspMAI	CTGCAG	1 cut(s)	436
BspPI	GGATC	1 cut(s)	176
BspT104I	TTCGAA	1 cut(s)	322
BsrDI	GCAATG	1 cut(s)	88
BsrGI	TGTACA	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	422
BssMI	GATC	1 cut(s)	168
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	1 cut(s)	300
BstAUI	TGTACA	1 cut(s)	30
BstBI	TTCGAA	1 cut(s)	322
BstC8I	GCNNGC	4 cut(s)	190, 341, 432, 446
BstDEI	CTNAG	2 cut(s)	208, 293
BstDSI	CCRYGG	1 cut(s)	422
BstF5I	GGATG	1 cut(s)	385
BstFNI	CGCG	1 cut(s)	424
BstH2I	RGCGCY	1 cut(s)	445
BstHHI	GCGC	1 cut(s)	444
BstKTI	GATC	1 cut(s)	171
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	5 cut(s)	114, 160, 402, 427, 475
BstNSI	RCATGY	4 cut(s)	163, 280, 343, 373
BstSFI	CTRYAG	1 cut(s)	432
BstUI	CGCG	1 cut(s)	424
BstV1I	GCAGC	3 cut(s)	95, 197, 204
BsuRI	GGCC	4 cut(s)	154, 215, 230, 478
BtgI	CCRYGG	1 cut(s)	422
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	4 cut(s)	190, 341, 432, 446
CfoI	GCGC	1 cut(s)	444
Cfr13I	GGNCC	3 cut(s)	214, 229, 459
Cfr42I	CCGCGG	1 cut(s)	425
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	6 cut(s)	160, 196, 277, 340, 360, 370
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	2 cut(s)	208, 293
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Ecl136II	GAGCTC	1 cut(s)	60
Eco147I	AGGCCT	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	62
Eco47I	GGWCC	1 cut(s)	459
Eco47III	AGCGCT	1 cut(s)	443
Eco53kI	GAGCTC	1 cut(s)	60
EcoICRI	GAGCTC	1 cut(s)	60
EcoT22I	ATGCAT	2 cut(s)	341, 365
EcoT38I	GRGCYC	1 cut(s)	62
FaeI	CATG	6 cut(s)	163, 199, 280, 343, 363, 373
FaiI	YATR	9 cut(s)	161, 197, 278, 341, 361, 371, 456, 491, 515
FatI	CATG	6 cut(s)	159, 195, 276, 339, 359, 369
FauI	CCCGC	1 cut(s)	129
Fnu4HI	GCNGC	5 cut(s)	109, 186, 193, 406, 422
FokI	GGATG	1 cut(s)	372
FriOI	GRGCYC	1 cut(s)	62
Fsp4HI	GCNGC	5 cut(s)	109, 186, 193, 406, 422
FspBI	CTAG	3 cut(s)	182, 522, 526
GlaI	GCGC	1 cut(s)	443
GluI	GCNGC	5 cut(s)	109, 186, 193, 406, 422
GsuI	CTGGAG	1 cut(s)	491
HaeII	RGCGCY	1 cut(s)	445
HaeIII	GGCC	4 cut(s)	154, 215, 230, 478
HapII	CCGG	4 cut(s)	227, 332, 449, 462
HhaI	GCGC	1 cut(s)	444
Hin1II	CATG	6 cut(s)	163, 199, 280, 343, 363, 373
Hin6I	GCGC	1 cut(s)	442
HinP1I	GCGC	1 cut(s)	442
HindIII	AAGCTT	1 cut(s)	175
HinfI	GANTC	1 cut(s)	485
HpaII	CCGG	4 cut(s)	227, 332, 449, 462
Hpy188I	TCNGA	2 cut(s)	19, 390
Hpy99I	CGWCG	1 cut(s)	132
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	9 cut(s)	93, 111, 163, 339, 343, 363, 434, 499, 517
HpyF10VI	GCNNNNNNNGC	5 cut(s)	114, 160, 402, 427, 475
HpyF3I	CTNAG	2 cut(s)	208, 293
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	6 cut(s)	163, 199, 280, 343, 363, 373
HspAI	GCGC	1 cut(s)	442
KspI	CCGCGG	1 cut(s)	425
Kzo9I	GATC	1 cut(s)	168
LpnPI	CCDG	9 cut(s)	26, 240, 305, 345, 444, 455, 462, 467, 475
Lsp1109I	GCAGC	3 cut(s)	95, 197, 204
LweI	GCATC	2 cut(s)	102, 403
MaeI	CTAG	3 cut(s)	182, 522, 526
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MboII	GAAGA	3 cut(s)	29, 317, 326
MhlI	GDGCHC	1 cut(s)	62
MluCI	AATT	6 cut(s)	9, 26, 300, 317, 399, 492
MlyI	GAGTC	1 cut(s)	494
MnlI	CCTC	5 cut(s)	144, 193, 217, 301, 468
Mph1103I	ATGCAT	2 cut(s)	341, 365
MroXI	GAANNNNTTC	1 cut(s)	318
MseI	TTAA	1 cut(s)	438
MslI	CAYNNNNRTG	1 cut(s)	368
MspA1I	CMGCKG	1 cut(s)	424
MspI	CCGG	4 cut(s)	227, 332, 449, 462
Mva1269I	GAATGC	1 cut(s)	341
MvnI	CGCG	1 cut(s)	424
MwoI	GCNNNNNNNGC	5 cut(s)	114, 160, 402, 427, 475
NdeII	GATC	1 cut(s)	168
NlaIII	CATG	6 cut(s)	163, 199, 280, 343, 363, 373
NlaIV	GGNNCC	1 cut(s)	460
NmeAIII	GCCGAG	1 cut(s)	41
NmuCI	GTSAC	1 cut(s)	76
NsiI	ATGCAT	2 cut(s)	341, 365
NspI	RCATGY	4 cut(s)	163, 280, 343, 373
NspV	TTCGAA	1 cut(s)	322
PaeI	GCATGC	1 cut(s)	343
PceI	AGGCCT	1 cut(s)	154
PciI	ACATGT	1 cut(s)	369
PctI	GAATGC	1 cut(s)	341
PdmI	GAANNNNTTC	1 cut(s)	318
PkrI	GCNGC	5 cut(s)	110, 187, 194, 407, 423
PleI	GAGTC	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	493
PscI	ACATGT	1 cut(s)	369
Psp124BI	GAGCTC	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	460
PspPI	GGNCC	3 cut(s)	214, 229, 459
PstI	CTGCAG	1 cut(s)	436
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	368
SacI	GAGCTC	1 cut(s)	62
SacII	CCGCGG	1 cut(s)	425
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	5 cut(s)	109, 186, 193, 406, 422
Sau3AI	GATC	1 cut(s)	168
Sau96I	GGNCC	3 cut(s)	214, 229, 459
SchI	GAGTC	1 cut(s)	494
SduI	GDGCHC	1 cut(s)	62
SetI	ASST	5 cut(s)	62, 179, 329, 357, 527
SfaNI	GCATC	2 cut(s)	102, 403
SfcI	CTRYAG	1 cut(s)	432
Sfr303I	CCGCGG	1 cut(s)	425
SfuI	TTCGAA	1 cut(s)	322
SgrBI	CCGCGG	1 cut(s)	425
SinI	GGWCC	1 cut(s)	459
SmiMI	CAYNNNNRTG	1 cut(s)	368
SphI	GCATGC	1 cut(s)	343
Sse9I	AATT	6 cut(s)	9, 26, 300, 317, 399, 492
SseBI	AGGCCT	1 cut(s)	154
SsiI	CCGC	5 cut(s)	115, 122, 406, 422, 424
SspMI	CTAG	3 cut(s)	182, 522, 526
SstI	GAGCTC	1 cut(s)	62
StuI	AGGCCT	1 cut(s)	154
TaaI	ACNGT	1 cut(s)	146
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	1 cut(s)	322
TasI	AATT	6 cut(s)	9, 26, 300, 317, 399, 492
TatI	WGTACW	1 cut(s)	30
TauI	GCSGC	2 cut(s)	408, 424
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	1 cut(s)	216
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	3 cut(s)	108, 185, 192
Tsp45I	GTSAC	1 cut(s)	76
TspRI	CASTG	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	459
XapI	RAATTY	1 cut(s)	317
XceI	RCATGY	4 cut(s)	163, 280, 343, 373
XmnI	GAANNNNTTC	1 cut(s)	318
XspI	CTAG	3 cut(s)	182, 522, 526
Zsp2I	ATGCAT	2 cut(s)	341, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.