Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004301

Physical Location & Seq

Genomic Coordinates Reverse (-)

7632129 .. 7632806

Gene Structure 678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG093000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGATATATAGAATACAGAAAACTACGTTCAAACTCAAAACCCTCCTCTCAAGTCTACAAAATTTTCCCTTGCCACTCTTTACAGAACCAAGCATGCGTTCCTACATGGCACCAACGCCCTCTCCGAGCCCCTTTTTGCCGCCGCCACCCCCGCCTCTGGCGACCAAAAGCACCAGCTTGCCTATGTTGTATTATGGCCTCATAGTTGTTGGAACTGCCGCTATTGTTCTAGCCATGTACAATCTCATCTTCATCAAATGGTCCGCCCCGCGCCACCCCCCATCATCACCGAGAAATGTTAGGTCCAACGCTTTTGTTGAGGCTGCAAGGTCAGCAAGGAGCAGGAGCTTTGAGAACTTGGACAGCTTCAAGTACAAGAAACAGAAGGAGAGGTCAGTGGCTCAAGAACAAGGTCAAGTACTGATCGATTATGAATGCGCGGTTTGCTTGTCGGTGTTTGAAGATGGAGAAGAGGTAAGGAAGTTGCCTAGCTGCAAGCACTCGTTTCATGCTCCTTGCATAGATATGTGGCTTTACTCTCACTCAGATTGCCCACTCTGCCGGGCAACGGTGCCAGTCGTTTCTTGGTGCCACCGGGAGTTAACCACTACTACGCTGGAGGAGCATTCCAGAGAAGTCCTGCTGGTTTCTAGCAGCATCGCAAGTTCACCGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

225

Amino Acids

25.29

Weight (kDa)

8.97

Isoelectric Point (pI)

69.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	145 - 188	2.4e-13	Ring finger domain
zf-RING_11	PF17123	145 - 174	2.2e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	145 - 187	3.6e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	146 - 187	3.5e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	155 - 188	2.3e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05280
fragaria_vesca	FvH4_1g08250
malus_domestica	MD01G1126200.v1.1 MD02G1086800.v1.1 MD07G1195700.v1.1 MD07G1195800.v1.1 MD07G1196000.v1.1 MD07G1196100.v1.1 MD15G1214000.v1.1
prunus_persica	Prupe.2G233100_v2.0.a1 Prupe.3G043300_v2.0.a1 Prupe.7G203000_v2.0.a1
pyrus_communis	pycom01g15190 pycom09g10280 pycom15g19020
rosa_chinensis	RchiOBHm_Chr2g0094301 RchiOBHm_Chr2g0144911
rosa_laevigata	RLG00000016475 RLG00000020118
rosa_multiflora	Rmu_sc0002354.1_g000011 Rmu_sc0003819.1_g000026
rosa_roxburghii	Rroxscaffold_2G00147280
rosa_rugosa	Rorug02G0042800
rosa_samantha	Rh2AG090600 Rh2AG442000 Rh2BG090500 Rh2BG452600 Rh2CG093000 Rh2CG429300 Rh2DG089500 Rh2DG462500
rosa_wichuraiana	Rw2G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	109, 571, 588
AccI	GTMKAC	1 cut(s)	55
AccII	CGCG	2 cut(s)	271, 440
AciI	CCGC	7 cut(s)	140, 143, 152, 219, 264, 269, 440
AcsI	RAATTY	1 cut(s)	61
AfaI	GTAC	3 cut(s)	239, 374, 420
AfiI	CCNNNNNNNGG	2 cut(s)	157, 568
AgeI	ACCGGT	1 cut(s)	670
AgsI	TTSAA	3 cut(s)	31, 370, 461
AjuI	GAANNNNNNNTTGG	2 cut(s)	82, 114
AluBI	AGCT	4 cut(s)	177, 348, 366, 492
AluI	AGCT	4 cut(s)	177, 348, 366, 492
AoxI	GGCC	1 cut(s)	196
ApeKI	GCWGC	3 cut(s)	323, 492, 654
ApoI	RAATTY	1 cut(s)	61
AsiGI	ACCGGT	1 cut(s)	670
AspLEI	GCGC	2 cut(s)	273, 440
AspS9I	GGNCC	2 cut(s)	261, 303
AsuC2I	CCSGG	2 cut(s)	563, 596
AsuHPI	GGTGA	2 cut(s)	279, 660
AvaII	GGWCC	2 cut(s)	261, 303
BanI	GGYRCC	3 cut(s)	109, 571, 588
BanII	GRGCYC	1 cut(s)	131
BbvI	GCAGC	3 cut(s)	310, 479, 666
BccI	CCATC	2 cut(s)	289, 458
BcnI	CCSGG	2 cut(s)	563, 596
BfaI	CTAG	3 cut(s)	230, 489, 651
BisI	GCNGC	6 cut(s)	140, 143, 219, 324, 493, 655
BlsI	GCNGC	6 cut(s)	141, 144, 220, 325, 494, 656
BmcAI	AGTACT	1 cut(s)	420
Bme1390I	CCNGG	2 cut(s)	563, 596
Bme18I	GGWCC	2 cut(s)	261, 303
BmgT120I	GGNCC	2 cut(s)	261, 303
BmiI	GGNNCC	3 cut(s)	111, 573, 590
BmrFI	CCNGG	2 cut(s)	563, 596
BmsI	GCATC	1 cut(s)	666
BpmI	CTGGAG	1 cut(s)	638
BpuEI	CTTGAG	2 cut(s)	34, 387
BpuMI	CCSGG	2 cut(s)	563, 596
Bsa29I	ATCGAT	1 cut(s)	426
BsaWI	WCCGGW	1 cut(s)	670
BsaXI	ACNNNNNCTCC	4 cut(s)	106, 136, 459, 489
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 568
Bse118I	RCCGGY	1 cut(s)	670
Bse1I	ACTGG	1 cut(s)	575
BseCI	ATCGAT	1 cut(s)	426
BseLI	CCNNNNNNNGG	2 cut(s)	157, 568
BseMII	CTCAG	1 cut(s)	558
BseNI	ACTGG	1 cut(s)	575
BseRI	GAGGAG	2 cut(s)	35, 635
BseXI	GCAGC	3 cut(s)	310, 479, 666
Bsh1236I	CGCG	2 cut(s)	271, 440
BshFI	GGCC	1 cut(s)	198
BshNI	GGYRCC	3 cut(s)	109, 571, 588
BshTI	ACCGGT	1 cut(s)	670
BshVI	ATCGAT	1 cut(s)	426
BsiSI	CCGG	3 cut(s)	562, 595, 671
BslI	CCNNNNNNNGG	2 cut(s)	157, 568
BsmI	GAATGC	2 cut(s)	440, 625
BsnI	GGCC	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp1407I	TGTACA	1 cut(s)	237
Bsp143I	GATC	1 cut(s)	423
BspACI	CCGC	7 cut(s)	140, 143, 152, 219, 264, 269, 440
BspANI	GGCC	1 cut(s)	198
BspCNI	CTCAG	1 cut(s)	557
BspDI	ATCGAT	1 cut(s)	426
BspFNI	CGCG	2 cut(s)	271, 440
BspLI	GGNNCC	3 cut(s)	111, 573, 590
BspT107I	GGYRCC	3 cut(s)	109, 571, 588
BsrFI	RCCGGY	1 cut(s)	670
BsrGI	TGTACA	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	575
BssAI	RCCGGY	1 cut(s)	670
BssMI	GATC	1 cut(s)	423
Bst4CI	ACNGT	1 cut(s)	571
Bst6I	CTCTTC	1 cut(s)	465
BstAUI	TGTACA	1 cut(s)	237
BstC8I	GCNNGC	3 cut(s)	95, 179, 497
BstDEI	CTNAG	1 cut(s)	544
BstFNI	CGCG	2 cut(s)	271, 440
BstHHI	GCGC	2 cut(s)	273, 440
BstKTI	GATC	1 cut(s)	426
BstMBI	GATC	1 cut(s)	423
BstMWI	GCNNNNNNNGC	5 cut(s)	151, 332, 444, 558, 622
BstNSI	RCATGY	1 cut(s)	97
BstSCI	CCNGG	2 cut(s)	561, 594
BstUI	CGCG	2 cut(s)	271, 440
BstV1I	GCAGC	3 cut(s)	310, 479, 666
Bsu15I	ATCGAT	1 cut(s)	426
BsuRI	GGCC	1 cut(s)	198
BsuTUI	ATCGAT	1 cut(s)	426
BtgZI	GCGATG	1 cut(s)	643
BtsIMutI	CAGTG	1 cut(s)	402
Cac8I	GCNNGC	3 cut(s)	95, 179, 497
CfoI	GCGC	2 cut(s)	273, 440
Cfr10I	RCCGGY	1 cut(s)	670
Cfr13I	GGNCC	2 cut(s)	261, 303
ClaI	ATCGAT	1 cut(s)	426
Csp6I	GTAC	3 cut(s)	238, 373, 419
CspAI	ACCGGT	1 cut(s)	670
CviAII	CATG	4 cut(s)	94, 106, 235, 509
CviQI	GTAC	3 cut(s)	238, 373, 419
DdeI	CTNAG	1 cut(s)	544
DpnI	GATC	1 cut(s)	425
DpnII	GATC	1 cut(s)	423
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
EciI	GGCGGA	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	131
Eco47I	GGWCC	2 cut(s)	261, 303
EcoT38I	GRGCYC	1 cut(s)	131
FaeI	CATG	4 cut(s)	97, 109, 238, 512
FatI	CATG	4 cut(s)	93, 105, 234, 508
FauI	CCCGC	2 cut(s)	159, 276
FblI	GTMKAC	1 cut(s)	55
Fnu4HI	GCNGC	6 cut(s)	140, 143, 219, 324, 493, 655
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	6 cut(s)	140, 143, 219, 324, 493, 655
FspBI	CTAG	3 cut(s)	230, 489, 651
GlaI	GCGC	2 cut(s)	272, 439
GluI	GCNGC	6 cut(s)	140, 143, 219, 324, 493, 655
GsuI	CTGGAG	1 cut(s)	638
HaeIII	GGCC	1 cut(s)	198
HapII	CCGG	3 cut(s)	562, 595, 671
HhaI	GCGC	2 cut(s)	273, 440
Hin1II	CATG	4 cut(s)	97, 109, 238, 512
Hin6I	GCGC	2 cut(s)	271, 438
HinP1I	GCGC	2 cut(s)	271, 438
HincII	GTYRAC	1 cut(s)	603
HindII	GTYRAC	1 cut(s)	603
HpaI	GTTAAC	1 cut(s)	603
HpaII	CCGG	3 cut(s)	562, 595, 671
HphI	GGTGA	2 cut(s)	279, 660
Hpy166II	GTNNAC	3 cut(s)	56, 603, 668
Hpy188I	TCNGA	2 cut(s)	126, 547
Hpy188III	TCNNGA	2 cut(s)	404, 630
Hpy8I	GTNNAC	3 cut(s)	56, 603, 668
HpyAV	CCTTC	1 cut(s)	379
HpyCH4III	ACNGT	1 cut(s)	571
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	3 cut(s)	326, 495, 519
HpyF10VI	GCNNNNNNNGC	5 cut(s)	151, 332, 444, 558, 622
HpyF3I	CTNAG	1 cut(s)	544
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	4 cut(s)	97, 109, 238, 512
HspAI	GCGC	2 cut(s)	271, 438
KspAI	GTTAAC	1 cut(s)	603
Kzo9I	GATC	1 cut(s)	423
LmnI	GCTCC	4 cut(s)	339, 345, 517, 622
Lsp1109I	GCAGC	3 cut(s)	310, 479, 666
LweI	GCATC	1 cut(s)	666
MaeI	CTAG	3 cut(s)	230, 489, 651
MaeII	ACGT	1 cut(s)	26
MalI	GATC	1 cut(s)	425
MboI	GATC	1 cut(s)	423
MboII	GAAGA	3 cut(s)	241, 473, 482
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	1 cut(s)	61
MmeI	TCCRAC	2 cut(s)	190, 330
MnlI	CCTC	9 cut(s)	53, 56, 130, 165, 209, 313, 384, 466, 613
MseI	TTAA	1 cut(s)	602
MslI	CAYNNNNRTG	1 cut(s)	524
MspI	CCGG	3 cut(s)	562, 595, 671
MspR9I	CCNGG	2 cut(s)	563, 596
Mva1269I	GAATGC	2 cut(s)	440, 625
MvnI	CGCG	2 cut(s)	271, 440
MwoI	GCNNNNNNNGC	5 cut(s)	151, 332, 444, 558, 622
NciI	CCSGG	2 cut(s)	563, 596
NdeII	GATC	1 cut(s)	423
NlaIII	CATG	4 cut(s)	97, 109, 238, 512
NlaIV	GGNNCC	3 cut(s)	111, 573, 590
NspI	RCATGY	1 cut(s)	97
PaeI	GCATGC	1 cut(s)	97
PcsI	WCGNNNNNNNCGW	1 cut(s)	122
PctI	GAATGC	2 cut(s)	440, 625
PinAI	ACCGGT	1 cut(s)	670
PkrI	GCNGC	6 cut(s)	141, 144, 220, 325, 494, 656
PspN4I	GGNNCC	3 cut(s)	111, 573, 590
PspPI	GGNCC	2 cut(s)	261, 303
RsaI	GTAC	3 cut(s)	239, 374, 420
RsaNI	GTAC	3 cut(s)	238, 373, 419
RseI	CAYNNNNRTG	1 cut(s)	524
SaqAI	TTAA	1 cut(s)	602
SatI	GCNGC	6 cut(s)	140, 143, 219, 324, 493, 655
Sau3AI	GATC	1 cut(s)	423
Sau96I	GGNCC	2 cut(s)	261, 303
ScaI	AGTACT	1 cut(s)	420
ScrFI	CCNGG	2 cut(s)	563, 596
SduI	GDGCHC	1 cut(s)	131
SfaNI	GCATC	1 cut(s)	666
SinI	GGWCC	2 cut(s)	261, 303
SmiMI	CAYNNNNRTG	1 cut(s)	524
SmlI	CTYRAG	2 cut(s)	49, 402
SmoI	CTYRAG	2 cut(s)	49, 402
SphI	GCATGC	1 cut(s)	97
Sse9I	AATT	1 cut(s)	61
SsiI	CCGC	7 cut(s)	140, 143, 152, 219, 264, 269, 440
SspMI	CTAG	3 cut(s)	230, 489, 651
StyD4I	CCNGG	2 cut(s)	561, 594
TaaI	ACNGT	1 cut(s)	571
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	1 cut(s)	426
TasI	AATT	1 cut(s)	61
TatI	WGTACW	3 cut(s)	237, 372, 418
TauI	GCSGC	3 cut(s)	142, 145, 221
Tru1I	TTAA	1 cut(s)	602
Tru9I	TTAA	1 cut(s)	602
TscAI	CASTG	1 cut(s)	402
TseI	GCWGC	3 cut(s)	323, 492, 654
TspDTI	ATGAA	3 cut(s)	241, 447, 497
TspRI	CASTG	1 cut(s)	402
VpaK11BI	GGWCC	2 cut(s)	261, 303
XapI	RAATTY	1 cut(s)	61
XceI	RCATGY	1 cut(s)	97
XcmI	CCANNNNNNNNNTGG	2 cut(s)	582, 613
XmiI	GTMKAC	1 cut(s)	55
XspI	CTAG	3 cut(s)	230, 489, 651
ZrmI	AGTACT	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.