Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004301

Physical Location & Seq

Genomic Coordinates Forward (+)

3071402 .. 3071929

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G043300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGCGGCTATCACTCTCATCAGGCATTGTGGTAATTGGTCTGCTGACCATTTCAGTTCTAGTGTTGATTCTTTCTATAGTTGGATGGTACGTATATCGTAACCGTATACTATCGTATACTCCAACAGGCAACGAACCGGTGAAGAAGATAGAAGGAACCGTCGACAGGAGGTTGAAACCGGATTTAATCACACTCAATTATAAGAGTGATGATCAAACTGATCATGAAGAAGAAGGTTCAAATTGTGATGAAACTCGGGGTGTTCAATGTGGGGTGTGCTTGAGAGGTTTAGAAAATGAGCAACTCGTGAGGCAGCTGCCAAAATGCAAGCACACCTTCCACGCACCTTGTATTGACACTTGGCTTCACTCTCATTATGGCTGCCCCCTCTGCCGTACTCTCATTGACCGCCTGCCTTCCGATGATGGCGTGGCATTGGCTACACCTCCTGATCAAGAGAAGAATTCCCAGGAGGTGGCACCAGTAGACAATATCAGAATTTCAATGTTATCTACCTCAATCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

176

Amino Acids

19.54

Weight (kDa)

5.71

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05280
fragaria_vesca	FvH4_1g08250
malus_domestica	MD01G1126200.v1.1 MD02G1086800.v1.1 MD07G1195700.v1.1 MD07G1195800.v1.1 MD07G1196000.v1.1 MD07G1196100.v1.1 MD15G1214000.v1.1
prunus_persica	Prupe.2G233100_v2.0.a1 Prupe.3G043300_v2.0.a1 Prupe.7G203000_v2.0.a1
pyrus_communis	pycom01g15190 pycom09g10280 pycom15g19020
rosa_chinensis	RchiOBHm_Chr2g0094301 RchiOBHm_Chr2g0144911
rosa_laevigata	RLG00000016475 RLG00000020118
rosa_multiflora	Rmu_sc0002354.1_g000011 Rmu_sc0003819.1_g000026
rosa_roxburghii	Rroxscaffold_2G00147280
rosa_rugosa	Rorug02G0042800
rosa_samantha	Rh2AG090600 Rh2AG442000 Rh2BG090500 Rh2BG452600 Rh2CG093000 Rh2CG429300 Rh2DG089500 Rh2DG462500
rosa_wichuraiana	Rw2G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	201
AccB1I	GGYRCC	1 cut(s)	478
AccB7I	CCANNNNNTGG	1 cut(s)	475
AccI	GTMKAC	4 cut(s)	106, 116, 162, 486
AciI	CCGC	2 cut(s)	4, 409
AcsI	RAATTY	2 cut(s)	463, 498
AfaI	GTAC	2 cut(s)	89, 397
AfiI	CCNNNNNNNGG	2 cut(s)	165, 475
AgeI	ACCGGT	1 cut(s)	136
AgsI	TTSAA	4 cut(s)	175, 240, 266, 504
AjnI	CCWGG	1 cut(s)	468
AluBI	AGCT	1 cut(s)	316
AluI	AGCT	1 cut(s)	316
Ama87I	CYCGRG	1 cut(s)	255
ApeKI	GCWGC	3 cut(s)	313, 316, 381
ApoI	RAATTY	2 cut(s)	463, 498
AsiGI	ACCGGT	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	151
AvaI	CYCGRG	1 cut(s)	255
BanI	GGYRCC	1 cut(s)	478
BauI	CACGAG	1 cut(s)	305
BbvI	GCAGC	3 cut(s)	303, 325, 368
BccI	CCATC	2 cut(s)	78, 419
BceAI	ACGGC	1 cut(s)	378
BciT130I	CCWGG	1 cut(s)	470
BclI	TGATCA	3 cut(s)	211, 220, 451
BfaI	CTAG	2 cut(s)	59, 526
BfmI	CTRYAG	1 cut(s)	75
BisI	GCNGC	4 cut(s)	5, 314, 317, 382
BlsI	GCNGC	4 cut(s)	6, 315, 318, 383
Bme1390I	CCNGG	1 cut(s)	470
BmeT110I	CYCGRG	1 cut(s)	255
BmiI	GGNNCC	2 cut(s)	157, 480
BmrFI	CCNGG	1 cut(s)	470
BpuEI	CTTGAG	1 cut(s)	301
BsaAI	YACGTR	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	468
BsaWI	WCCGGW	2 cut(s)	136, 178
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 475
Bse118I	RCCGGY	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	482
BseBI	CCWGG	1 cut(s)	470
BseDI	CCNNGG	1 cut(s)	468
BseGI	GGATG	1 cut(s)	89
BseLI	CCNNNNNNNGG	2 cut(s)	165, 475
BseNI	ACTGG	1 cut(s)	482
BseXI	GCAGC	3 cut(s)	303, 325, 368
BshNI	GGYRCC	1 cut(s)	478
BshTI	ACCGGT	1 cut(s)	136
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	137, 179
BslI	CCNNNNNNNGG	2 cut(s)	165, 475
BsoBI	CYCGRG	1 cut(s)	255
Bsp143I	GATC	3 cut(s)	211, 220, 451
BspACI	CCGC	2 cut(s)	4, 409
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	2 cut(s)	157, 480
BspT107I	GGYRCC	1 cut(s)	478
BsrFI	RCCGGY	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	482
BssAI	RCCGGY	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	3 cut(s)	211, 220, 451
BssNAI	GTATAC	2 cut(s)	107, 117
BssSI	CACGAG	1 cut(s)	305
Bst1107I	GTATAC	2 cut(s)	107, 117
Bst2BI	CACGAG	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	470
Bst4CI	ACNGT	2 cut(s)	104, 160
BstBAI	YACGTR	1 cut(s)	91
BstC8I	GCNNGC	2 cut(s)	329, 413
BstF5I	GGATG	1 cut(s)	89
BstKTI	GATC	3 cut(s)	214, 223, 454
BstMBI	GATC	3 cut(s)	211, 220, 451
BstMWI	GCNNNNNNNGC	1 cut(s)	390
BstNI	CCWGG	1 cut(s)	470
BstSCI	CCNGG	1 cut(s)	468
BstSFI	CTRYAG	1 cut(s)	75
BstSNI	TACGTA	1 cut(s)	91
BstV1I	GCAGC	3 cut(s)	303, 325, 368
BstZ17I	GTATAC	2 cut(s)	107, 117
BtsCI	GGATG	1 cut(s)	89
Cac8I	GCNNGC	2 cut(s)	329, 413
CciI	TCATGA	1 cut(s)	223
Cfr10I	RCCGGY	1 cut(s)	136
Csp6I	GTAC	2 cut(s)	88, 396
CspAI	ACCGGT	1 cut(s)	136
CspCI	CAANNNNNGTGG	2 cut(s)	329, 364
CviAII	CATG	1 cut(s)	224
CviJI	RGCY	5 cut(s)	7, 316, 364, 381, 440
CviKI_1	RGCY	5 cut(s)	7, 316, 364, 381, 440
CviQI	GTAC	2 cut(s)	88, 396
DpnI	GATC	3 cut(s)	213, 222, 453
DpnII	GATC	3 cut(s)	211, 220, 451
Eco105I	TACGTA	1 cut(s)	91
Eco88I	CYCGRG	1 cut(s)	255
EcoRI	GAATTC	1 cut(s)	463
EcoRII	CCWGG	1 cut(s)	468
FaeI	CATG	1 cut(s)	227
FaiI	YATR	7 cut(s)	77, 94, 107, 117, 201, 225, 378
FalI	AAGNNNNNCTT	2 cut(s)	320, 352
FatI	CATG	1 cut(s)	223
FbaI	TGATCA	3 cut(s)	211, 220, 451
FblI	GTMKAC	4 cut(s)	106, 116, 162, 486
Fnu4HI	GCNGC	4 cut(s)	5, 314, 317, 382
FokI	GGATG	1 cut(s)	96
Fsp4HI	GCNGC	4 cut(s)	5, 314, 317, 382
FspBI	CTAG	2 cut(s)	59, 526
GluI	GCNGC	4 cut(s)	5, 314, 317, 382
HapII	CCGG	2 cut(s)	137, 179
Hin1II	CATG	1 cut(s)	227
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	1 cut(s)	67
HpaII	CCGG	2 cut(s)	137, 179
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	4 cut(s)	107, 117, 163, 487
Hpy188I	TCNGA	2 cut(s)	421, 497
Hpy188III	TCNNGA	4 cut(s)	224, 307, 449, 455
Hpy8I	GTNNAC	4 cut(s)	107, 117, 163, 487
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	4 cut(s)	146, 227, 346, 426
HpyCH4III	ACNGT	2 cut(s)	104, 160
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	1 cut(s)	327
HpyF10VI	GCNNNNNNNGC	1 cut(s)	390
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	227
Ksp22I	TGATCA	3 cut(s)	211, 220, 451
Kzo9I	GATC	3 cut(s)	211, 220, 451
Lsp1109I	GCAGC	3 cut(s)	303, 325, 368
MaeI	CTAG	2 cut(s)	59, 526
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	3 cut(s)	213, 222, 453
MboI	GATC	3 cut(s)	211, 220, 451
MboII	GAAGA	5 cut(s)	154, 157, 239, 242, 472
MluCI	AATT	5 cut(s)	33, 196, 241, 463, 498
MmeI	TCCRAC	2 cut(s)	61, 146
MnlI	CCTC	7 cut(s)	162, 278, 303, 398, 456, 466, 526
MseI	TTAA	1 cut(s)	185
MspA1I	CMGCKG	1 cut(s)	316
MspI	CCGG	2 cut(s)	137, 179
MspR9I	CCNGG	1 cut(s)	470
MvaI	CCWGG	1 cut(s)	470
MwoI	GCNNNNNNNGC	1 cut(s)	390
NdeII	GATC	3 cut(s)	211, 220, 451
NlaIII	CATG	1 cut(s)	227
NlaIV	GGNNCC	2 cut(s)	157, 480
PagI	TCATGA	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	67
PflMI	CCANNNNNTGG	1 cut(s)	475
PinAI	ACCGGT	1 cut(s)	136
PkrI	GCNGC	4 cut(s)	6, 315, 318, 383
Ppu21I	YACGTR	1 cut(s)	91
PsiI	TTATAA	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	468
PspGI	CCWGG	1 cut(s)	468
PspN4I	GGNNCC	2 cut(s)	157, 480
PvuII	CAGCTG	1 cut(s)	316
RsaI	GTAC	2 cut(s)	89, 397
RsaNI	GTAC	2 cut(s)	88, 396
SalI	GTCGAC	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	4 cut(s)	5, 314, 317, 382
Sau3AI	GATC	3 cut(s)	211, 220, 451
ScrFI	CCNGG	1 cut(s)	470
SfcI	CTRYAG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
SnaBI	TACGTA	1 cut(s)	91
Sse9I	AATT	5 cut(s)	33, 196, 241, 463, 498
SsiI	CCGC	2 cut(s)	4, 409
SspMI	CTAG	2 cut(s)	59, 526
StyD4I	CCNGG	1 cut(s)	468
TaaI	ACNGT	2 cut(s)	104, 160
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	1 cut(s)	162
TasI	AATT	5 cut(s)	33, 196, 241, 463, 498
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	67
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TseI	GCWGC	3 cut(s)	313, 316, 381
TspDTI	ATGAA	2 cut(s)	240, 264
Van91I	CCANNNNNTGG	1 cut(s)	475
XapI	RAATTY	2 cut(s)	463, 498
XmiI	GTMKAC	4 cut(s)	106, 116, 162, 486
XspI	CTAG	2 cut(s)	59, 526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.