Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004301

Physical Location & Seq

Genomic Coordinates Reverse (-)

6973082 .. 6973666

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016475

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCGTTCCTACATGGCACCAACGCCCCTTCGGAGCCCCTTTTTGCCGCCGCCAACCCCGCCTCCGGAGACCAAAAGCACCAGCTTGCCTATGTTGTATTATGGCCTCATAGTTGTTGGAACTGCCGCTATAGTTCTAGCCATGTACAATCTCATCTTCATCAAATGGTCCGCCCCGCGCCGCCCCCCATCATCACCGAGAAATGTTAGGTCCAACGCTTTTGTTGAGGCTGCAAGGTCAGCAAGGAGCAGGAGCTTTGAGAACTTGGACAGCTTCAAGTACAAGAAACAGAAGGAGGGGTCAGTGGCTCAAGAACAAGGTCAAGTACTGATCGATTATGAATGCGCGGTTTGCTTGTCGGTGTTTGAAGATGGAGAAGAGGTAAGGAAGTTGCCTAGCTGCAAGCACTCGTTTCATGCTCCTTGCATAGATATGTGGCTTTACTCTCACTCAGATTGCCCGCTCTGCCGAGCAACGGTGCCAGTCGTTTCTTGGTGCCACCGGGAGTTAACTGCTACTACGCCGGAGGAGCATTCCAGAGAAGTGCTGCTGGTTTCTAGCAGCATCGCAAGTTCGCCGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

195

Amino Acids

21.66

Weight (kDa)

8.48

Isoelectric Point (pI)

74.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	114 - 157	1.9e-13	Ring finger domain
zf-RING_11	PF17123	114 - 143	1.7e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	114 - 156	2.8e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	115 - 156	2.7e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	124 - 157	2.4e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05280
fragaria_vesca	FvH4_1g08250
malus_domestica	MD01G1126200.v1.1 MD02G1086800.v1.1 MD07G1195700.v1.1 MD07G1195800.v1.1 MD07G1196000.v1.1 MD07G1196100.v1.1 MD15G1214000.v1.1
prunus_persica	Prupe.2G233100_v2.0.a1 Prupe.3G043300_v2.0.a1 Prupe.7G203000_v2.0.a1
pyrus_communis	pycom01g15190 pycom09g10280 pycom15g19020
rosa_chinensis	RchiOBHm_Chr2g0094301 RchiOBHm_Chr2g0144911
rosa_laevigata	RLG00000016475 RLG00000020118
rosa_multiflora	Rmu_sc0002354.1_g000011 Rmu_sc0003819.1_g000026
rosa_roxburghii	Rroxscaffold_2G00147280
rosa_rugosa	Rorug02G0042800
rosa_samantha	Rh2AG090600 Rh2AG442000 Rh2BG090500 Rh2BG452600 Rh2CG093000 Rh2CG429300 Rh2DG089500 Rh2DG462500
rosa_wichuraiana	Rw2G036140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	16, 478, 495
AccBSI	CCGCTC	1 cut(s)	463
AccII	CGCG	2 cut(s)	178, 347
AccIII	TCCGGA	1 cut(s)	64
AciI	CCGC	9 cut(s)	47, 50, 59, 126, 171, 176, 181, 347, 461
AfaI	GTAC	3 cut(s)	146, 281, 327
AfiI	CCNNNNNNNGG	2 cut(s)	64, 475
AgsI	TTSAA	2 cut(s)	277, 368
AluBI	AGCT	4 cut(s)	84, 255, 273, 399
AluI	AGCT	4 cut(s)	84, 255, 273, 399
Alw26I	GTCTC	1 cut(s)	62
Aor13HI	TCCGGA	1 cut(s)	64
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	4 cut(s)	230, 399, 547, 561
AspLEI	GCGC	2 cut(s)	180, 347
AspS9I	GGNCC	2 cut(s)	168, 210
AsuC2I	CCSGG	1 cut(s)	503
AsuHPI	GGTGA	1 cut(s)	186
AvaII	GGWCC	2 cut(s)	168, 210
BanI	GGYRCC	3 cut(s)	16, 478, 495
BanII	GRGCYC	1 cut(s)	38
BbvI	GCAGC	4 cut(s)	217, 386, 534, 573
BccI	CCATC	2 cut(s)	196, 365
BcnI	CCSGG	1 cut(s)	503
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	3 cut(s)	137, 396, 558
BfmI	CTRYAG	1 cut(s)	129
BisI	GCNGC	8 cut(s)	47, 50, 126, 181, 231, 400, 548, 562
BlsI	GCNGC	8 cut(s)	48, 51, 127, 182, 232, 401, 549, 563
BmcAI	AGTACT	1 cut(s)	327
Bme1390I	CCNGG	1 cut(s)	503
Bme18I	GGWCC	2 cut(s)	168, 210
BmgT120I	GGNCC	2 cut(s)	168, 210
BmiI	GGNNCC	4 cut(s)	18, 35, 480, 497
BmrFI	CCNGG	1 cut(s)	503
BmsI	GCATC	1 cut(s)	573
BpuEI	CTTGAG	1 cut(s)	294
BpuMI	CCSGG	1 cut(s)	503
Bsa29I	ATCGAT	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	62
BsaWI	WCCGGW	1 cut(s)	64
BsaXI	ACNNNNNCTCC	4 cut(s)	46, 76, 366, 396
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 475
Bse118I	RCCGGY	1 cut(s)	577
Bse1I	ACTGG	1 cut(s)	482
BseAI	TCCGGA	1 cut(s)	64
BseCI	ATCGAT	1 cut(s)	333
BseLI	CCNNNNNNNGG	2 cut(s)	64, 475
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	1 cut(s)	482
BseRI	GAGGAG	1 cut(s)	542
BseXI	GCAGC	4 cut(s)	217, 386, 534, 573
Bsh1236I	CGCG	2 cut(s)	178, 347
BshFI	GGCC	1 cut(s)	105
BshNI	GGYRCC	3 cut(s)	16, 478, 495
BshVI	ATCGAT	1 cut(s)	333
BsiSI	CCGG	4 cut(s)	65, 502, 524, 578
BslI	CCNNNNNNNGG	2 cut(s)	64, 475
BsmAI	GTCTC	1 cut(s)	62
BsmI	GAATGC	2 cut(s)	347, 532
BsnI	GGCC	1 cut(s)	105
Bso31I	GGTCTC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp13I	TCCGGA	1 cut(s)	64
Bsp1407I	TGTACA	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	330
BspACI	CCGC	9 cut(s)	47, 50, 59, 126, 171, 176, 181, 347, 461
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	1 cut(s)	464
BspDI	ATCGAT	1 cut(s)	333
BspEI	TCCGGA	1 cut(s)	64
BspFNI	CGCG	2 cut(s)	178, 347
BspLI	GGNNCC	4 cut(s)	18, 35, 480, 497
BspT107I	GGYRCC	3 cut(s)	16, 478, 495
BspTNI	GGTCTC	1 cut(s)	62
BsrBI	CCGCTC	1 cut(s)	463
BsrFI	RCCGGY	1 cut(s)	577
BsrGI	TGTACA	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	482
BssAI	RCCGGY	1 cut(s)	577
BssMI	GATC	1 cut(s)	330
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	1 cut(s)	372
BstAUI	TGTACA	1 cut(s)	144
BstC8I	GCNNGC	3 cut(s)	86, 404, 461
BstDEI	CTNAG	1 cut(s)	451
BstFNI	CGCG	2 cut(s)	178, 347
BstHHI	GCGC	2 cut(s)	180, 347
BstKTI	GATC	1 cut(s)	333
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	1 cut(s)	330
BstMWI	GCNNNNNNNGC	5 cut(s)	58, 239, 351, 465, 529
BstSCI	CCNGG	1 cut(s)	501
BstSFI	CTRYAG	1 cut(s)	129
BstUI	CGCG	2 cut(s)	178, 347
BstV1I	GCAGC	4 cut(s)	217, 386, 534, 573
Bsu15I	ATCGAT	1 cut(s)	333
BsuRI	GGCC	1 cut(s)	105
BsuTUI	ATCGAT	1 cut(s)	333
BtgZI	GCGATG	1 cut(s)	550
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	3 cut(s)	86, 404, 461
CfoI	GCGC	2 cut(s)	180, 347
Cfr10I	RCCGGY	1 cut(s)	577
Cfr13I	GGNCC	2 cut(s)	168, 210
ClaI	ATCGAT	1 cut(s)	333
Csp6I	GTAC	3 cut(s)	145, 280, 326
CviAII	CATG	3 cut(s)	13, 142, 416
CviQI	GTAC	3 cut(s)	145, 280, 326
DdeI	CTNAG	1 cut(s)	451
DpnI	GATC	1 cut(s)	332
DpnII	GATC	1 cut(s)	330
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
EciI	GGCGGA	1 cut(s)	160
Eco24I	GRGCYC	1 cut(s)	38
Eco31I	GGTCTC	1 cut(s)	62
Eco47I	GGWCC	2 cut(s)	168, 210
EcoT38I	GRGCYC	1 cut(s)	38
FaeI	CATG	3 cut(s)	16, 145, 419
FatI	CATG	3 cut(s)	12, 141, 415
FauI	CCCGC	3 cut(s)	66, 183, 468
Fnu4HI	GCNGC	8 cut(s)	47, 50, 126, 181, 231, 400, 548, 562
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	8 cut(s)	47, 50, 126, 181, 231, 400, 548, 562
FspBI	CTAG	3 cut(s)	137, 396, 558
GlaI	GCGC	2 cut(s)	179, 346
GluI	GCNGC	8 cut(s)	47, 50, 126, 181, 231, 400, 548, 562
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	4 cut(s)	65, 502, 524, 578
HhaI	GCGC	2 cut(s)	180, 347
Hin1II	CATG	3 cut(s)	16, 145, 419
Hin6I	GCGC	2 cut(s)	178, 345
HinP1I	GCGC	2 cut(s)	178, 345
HincII	GTYRAC	1 cut(s)	510
HindII	GTYRAC	1 cut(s)	510
HpaI	GTTAAC	1 cut(s)	510
HpaII	CCGG	4 cut(s)	65, 502, 524, 578
HphI	GGTGA	1 cut(s)	186
Hpy166II	GTNNAC	1 cut(s)	510
Hpy188I	TCNGA	2 cut(s)	33, 454
Hpy188III	TCNNGA	3 cut(s)	65, 311, 537
Hpy8I	GTNNAC	1 cut(s)	510
HpyAV	CCTTC	2 cut(s)	38, 286
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4V	TGCA	3 cut(s)	233, 402, 426
HpyF10VI	GCNNNNNNNGC	5 cut(s)	58, 239, 351, 465, 529
HpyF3I	CTNAG	1 cut(s)	451
Hsp92II	CATG	3 cut(s)	16, 145, 419
HspAI	GCGC	2 cut(s)	178, 345
Kpn2I	TCCGGA	1 cut(s)	64
KspAI	GTTAAC	1 cut(s)	510
Kzo9I	GATC	1 cut(s)	330
LmnI	GCTCC	5 cut(s)	33, 246, 252, 424, 529
LpnPI	CCDG	8 cut(s)	78, 94, 235, 495, 515, 536, 537, 550
Lsp1109I	GCAGC	4 cut(s)	217, 386, 534, 573
LweI	GCATC	1 cut(s)	573
MaeI	CTAG	3 cut(s)	137, 396, 558
MalI	GATC	1 cut(s)	332
MbiI	CCGCTC	1 cut(s)	463
MboI	GATC	1 cut(s)	330
MboII	GAAGA	3 cut(s)	148, 380, 389
MhlI	GDGCHC	1 cut(s)	38
MmeI	TCCRAC	2 cut(s)	97, 237
MnlI	CCTC	6 cut(s)	72, 116, 220, 289, 373, 520
MroI	TCCGGA	1 cut(s)	64
MseI	TTAA	2 cut(s)	509, 583
MslI	CAYNNNNRTG	1 cut(s)	431
MspI	CCGG	4 cut(s)	65, 502, 524, 578
MspR9I	CCNGG	1 cut(s)	503
Mva1269I	GAATGC	2 cut(s)	347, 532
MvnI	CGCG	2 cut(s)	178, 347
MwoI	GCNNNNNNNGC	5 cut(s)	58, 239, 351, 465, 529
NciI	CCSGG	1 cut(s)	503
NdeII	GATC	1 cut(s)	330
NlaIII	CATG	3 cut(s)	16, 145, 419
NlaIV	GGNNCC	4 cut(s)	18, 35, 480, 497
NmeAIII	GCCGAG	1 cut(s)	494
PctI	GAATGC	2 cut(s)	347, 532
PkrI	GCNGC	8 cut(s)	48, 51, 127, 182, 232, 401, 549, 563
PspN4I	GGNNCC	4 cut(s)	18, 35, 480, 497
PspPI	GGNCC	2 cut(s)	168, 210
RsaI	GTAC	3 cut(s)	146, 281, 327
RsaNI	GTAC	3 cut(s)	145, 280, 326
RseI	CAYNNNNRTG	1 cut(s)	431
SaqAI	TTAA	2 cut(s)	509, 583
SatI	GCNGC	8 cut(s)	47, 50, 126, 181, 231, 400, 548, 562
Sau3AI	GATC	1 cut(s)	330
Sau96I	GGNCC	2 cut(s)	168, 210
ScaI	AGTACT	1 cut(s)	327
ScrFI	CCNGG	1 cut(s)	503
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	8 cut(s)	86, 212, 239, 257, 275, 322, 384, 401
SfaNI	GCATC	1 cut(s)	573
SfcI	CTRYAG	1 cut(s)	129
SinI	GGWCC	2 cut(s)	168, 210
SmiMI	CAYNNNNRTG	1 cut(s)	431
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
SsiI	CCGC	9 cut(s)	47, 50, 59, 126, 171, 176, 181, 347, 461
SspMI	CTAG	3 cut(s)	137, 396, 558
StyD4I	CCNGG	1 cut(s)	501
TaaI	ACNGT	1 cut(s)	478
TaqI	TCGA	1 cut(s)	333
TatI	WGTACW	3 cut(s)	144, 279, 325
TauI	GCSGC	4 cut(s)	49, 52, 128, 183
Tru1I	TTAA	2 cut(s)	509, 583
Tru9I	TTAA	2 cut(s)	509, 583
TscAI	CASTG	1 cut(s)	309
TseI	GCWGC	4 cut(s)	230, 399, 547, 561
TspDTI	ATGAA	3 cut(s)	148, 354, 404
TspRI	CASTG	1 cut(s)	309
VpaK11BI	GGWCC	2 cut(s)	168, 210
XcmI	CCANNNNNNNNNTGG	1 cut(s)	489
XspI	CTAG	3 cut(s)	137, 396, 558
ZrmI	AGTACT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.