AT5G06570

alpha/beta hydrolase fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001599
Physical Location & Seq
Reverse (-)
2007419 .. 2011179
3761 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G06570.4

Sequence Viewer

Length: 990 bp
ATGGGGTCACTAGGAGAAGAACCACAAGTAGCAGAAGACTGCATGGGTTTGCTTCAACTCCTAAGCAACGGTACCGTTTTGAGATCCGAGAGCATTGACCTTATTACCCAACAAATCCCATTCAAAAACAACCAAACCGTTCTCTTCAAAGACTCAATCTATCACAAACCTAACAACCTTCACCTCCGTCTCTACAAACCCATTTCCGCCTCCAACCGTACCGCTCTCCCTGTCGTGGTCTTCTTCCACGGCGGGGGCTTCTGCTTCGGGTCACGTTCTTGGCCTCACTTTCACAACTTCTGTCTAACTCTTGCATCGTCCCTTAACGCCCTTGTCGTCTCACCTGACTACCGGTTAGCACCCGAACACCGCCTCCCGGCTGCCTTTGAGGATGCTGAGGCGGTGCTTACATGGCTCTGGGACCAAGCTGTTTCCGATGGTGTGAACCACTGGTTTGAAGATGGAACAGACGTTGACTTTGACAGGGTTTTTGTTGTTGGTGATTCATCCGGTGGGAACATAGCTCATCAACTCGCTGTCCGGTTCGGATCCGGTTCAATCGAGTTGACACCGGTTCGGGTACGCGGTTACGTTCTTATGGGACCGTTTTTTGGCGGGGAAGAGAGGACTAACTCCGAGAATGGCCCCTCTGAAGCTTTGCTCAGCTTGGATTTGCTTGACAAGTTTTGGAGATTGTCACTACCAAACGGTGCAACAAGAGATCACCACATGGCTAACCCTTTTGGACCAACGAGTCCTACACTCGAATCAATTAGCTTAGAGCCAATGTTGGTGATTGTCGGCGGCTCAGAACTCTTGAGAGATAGGGCCAAGGAATATGCATATAAATTAAAGAAGATGGGAGGAAAAAGGGTAGATTACATTGAATTCGAAAACAAGGAGCATGGTTTCTACTCCAACTATCCATCTTCCGAGGCTGCGGAACAAGTTCTCCGTATCATTGGAGACTTTATGAACAACTTGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

329

Amino Acids

36.6

Weight (kDa)

5.37

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 70 - 135 1.5e-08 Carboxylesterase family
BD-FAE PF20434 79 - 195 8.7e-12 BD-FAE
Abhydrolase_3 PF07859 94 - 320 3e-59 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 753
Acc65I GGTACC 1 cut(s) 71
AccB1I GGYRCC 1 cut(s) 71
AccBSI CCGCTC 1 cut(s) 224
AccII CGCG 1 cut(s) 585
AciI CCGC 9 cut(s) 207, 222, 252, 370, 401, 585, 615, 804, 941
AclWI GGATC 3 cut(s) 78, 543, 556
AcsI RAATTY 1 cut(s) 887
AcuI CTGAAG 1 cut(s) 672
AfaI GTAC 3 cut(s) 73, 220, 582
AfiI CCNNNNNNNGG 4 cut(s) 235, 253, 376, 611
AgeI ACCGGT 2 cut(s) 351, 571
AgsI TTSAA 6 cut(s) 56, 124, 148, 458, 558, 887
AloI GAACNNNNNNTCC 4 cut(s) 357, 389, 936, 968
AluBI AGCT 5 cut(s) 428, 524, 656, 666, 777
AluI AGCT 5 cut(s) 428, 524, 656, 666, 777
Alw26I GTCTC 3 cut(s) 194, 343, 960
AlwI GGATC 3 cut(s) 78, 543, 556
AoxI GGCC 3 cut(s) 281, 643, 828
ApeKI GCWGC 2 cut(s) 380, 938
ApoI RAATTY 1 cut(s) 887
ArsI GACNNNNNNTTYG 4 cut(s) 461, 473, 493, 505
AsiGI ACCGGT 2 cut(s) 351, 571
Asp700I GAANNNNTTC 1 cut(s) 948
Asp718I GGTACC 1 cut(s) 71
AspS9I GGNCC 5 cut(s) 421, 602, 644, 746, 828
AsuC2I CCSGG 1 cut(s) 377
AsuHPI GGTGA 5 cut(s) 173, 333, 512, 716, 805
AsuII TTCGAA 1 cut(s) 891
AvaII GGWCC 3 cut(s) 421, 602, 746
BamHI GGATCC 1 cut(s) 548
BanI GGYRCC 1 cut(s) 71
BbsI GAAGAC 2 cut(s) 42, 232
BbvCI CCTCAGC 1 cut(s) 396
BbvI GCAGC 2 cut(s) 367, 925
BccI CCATC 4 cut(s) 431, 455, 853, 934
BceAI ACGGC 1 cut(s) 265
BcnI CCSGG 1 cut(s) 377
BcoDI GTCTC 3 cut(s) 194, 343, 960
BfaI CTAG 1 cut(s) 11
BisI GCNGC 3 cut(s) 381, 805, 939
BlpI GCTNAGC 1 cut(s) 662
BlsI GCNGC 3 cut(s) 382, 806, 940
Bme1390I CCNGG 1 cut(s) 377
Bme18I GGWCC 3 cut(s) 421, 602, 746
BmgT120I GGNCC 5 cut(s) 421, 602, 644, 746, 828
BmiI GGNNCC 5 cut(s) 73, 422, 550, 603, 646
BmrFI CCNGG 1 cut(s) 377
BmsI GCATC 2 cut(s) 323, 382
BpiI GAAGAC 2 cut(s) 42, 232
Bpu10I CCTNAGC 2 cut(s) 62, 396
Bpu1102I GCTNAGC 1 cut(s) 662
Bpu14I TTCGAA 1 cut(s) 891
BpuEI CTTGAG 1 cut(s) 838
BpuMI CCSGG 1 cut(s) 377
BsaJI CCNNGG 3 cut(s) 247, 831, 933
BsaWI WCCGGW 5 cut(s) 351, 509, 540, 551, 571
BsaXI ACNNNNNCTCC 4 cut(s) 357, 387, 936, 966
Bsc4I CCNNNNNNNGG 4 cut(s) 235, 253, 376, 611
Bse118I RCCGGY 2 cut(s) 351, 571
Bse1I ACTGG 1 cut(s) 455
BseDI CCNNGG 3 cut(s) 247, 831, 933
BseGI GGATG 2 cut(s) 397, 506
BseLI CCNNNNNNNGG 4 cut(s) 235, 253, 376, 611
BseMII CTCAG 3 cut(s) 387, 676, 822
BseNI ACTGG 1 cut(s) 455
BseXI GCAGC 2 cut(s) 367, 925
Bsh1236I CGCG 1 cut(s) 585
BshFI GGCC 3 cut(s) 283, 645, 830
BshNI GGYRCC 1 cut(s) 71
BshTI ACCGGT 2 cut(s) 351, 571
BsiSI CCGG 6 cut(s) 352, 377, 510, 541, 552, 572
BslFI GGGAC 3 cut(s) 304, 434, 615
BslI CCNNNNNNNGG 4 cut(s) 235, 253, 376, 611
BsmAI GTCTC 3 cut(s) 194, 343, 960
BsmBI CGTCTC 2 cut(s) 194, 343
BsmFI GGGAC 3 cut(s) 304, 434, 615
BsnI GGCC 3 cut(s) 283, 645, 830
Bsp119I TTCGAA 1 cut(s) 891
Bsp143I GATC 3 cut(s) 83, 548, 721
Bsp1720I GCTNAGC 1 cut(s) 662
BspACI CCGC 9 cut(s) 207, 222, 252, 370, 401, 585, 615, 804, 941
BspANI GGCC 3 cut(s) 283, 645, 830
BspCNI CTCAG 3 cut(s) 388, 675, 821
BspFNI CGCG 1 cut(s) 585
BspLI GGNNCC 5 cut(s) 73, 422, 550, 603, 646
BspPI GGATC 3 cut(s) 78, 543, 556
BspT104I TTCGAA 1 cut(s) 891
BspT107I GGYRCC 1 cut(s) 71
BsrBI CCGCTC 1 cut(s) 224
BsrFI RCCGGY 2 cut(s) 351, 571
BsrI ACTGG 1 cut(s) 455
BssAI RCCGGY 2 cut(s) 351, 571
BssECI CCNNGG 3 cut(s) 247, 831, 933
BssMI GATC 3 cut(s) 83, 548, 721
BssT1I CCWWGG 1 cut(s) 831
Bst4CI ACNGT 6 cut(s) 71, 76, 139, 218, 606, 710
Bst6I CTCTTC 2 cut(s) 149, 615
BstBI TTCGAA 1 cut(s) 891
BstDEI CTNAG 5 cut(s) 62, 396, 662, 778, 808
BstDSI CCRYGG 1 cut(s) 247
BstF5I GGATG 2 cut(s) 397, 506
BstFNI CGCG 1 cut(s) 585
BstKTI GATC 3 cut(s) 86, 551, 724
BstMAI GTCTC 3 cut(s) 194, 343, 960
BstMBI GATC 3 cut(s) 83, 548, 721
BstMWI GCNNNNNNNGC 1 cut(s) 412
BstSCI CCNGG 1 cut(s) 375
BstUI CGCG 1 cut(s) 585
BstV1I GCAGC 2 cut(s) 367, 925
BstV2I GAAGAC 2 cut(s) 42, 232
BstX2I RGATCY 2 cut(s) 83, 548
BstYI RGATCY 2 cut(s) 83, 548
BsuRI GGCC 3 cut(s) 283, 645, 830
BtgI CCRYGG 1 cut(s) 247
BtsCI GGATG 2 cut(s) 397, 506
BtsIMutI CAGTG 1 cut(s) 448
Cfr10I RCCGGY 2 cut(s) 351, 571
Cfr13I GGNCC 5 cut(s) 421, 602, 644, 746, 828
Csp6I GTAC 3 cut(s) 72, 219, 581
CspAI ACCGGT 2 cut(s) 351, 571
CviAII CATG 4 cut(s) 43, 411, 730, 905
CviQI GTAC 3 cut(s) 72, 219, 581
DdeI CTNAG 5 cut(s) 62, 396, 662, 778, 808
DpnI GATC 3 cut(s) 85, 550, 723
DpnII GATC 3 cut(s) 83, 548, 721
DrdI GACNNNNNNGTC 1 cut(s) 753
DseDI GACNNNNNNGTC 1 cut(s) 753
Eam1104I CTCTTC 2 cut(s) 149, 615
EarI CTCTTC 2 cut(s) 149, 615
EciI GGCGGA 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 831
Eco47I GGWCC 3 cut(s) 421, 602, 746
Eco57I CTGAAG 1 cut(s) 672
EcoRI GAATTC 1 cut(s) 887
EcoT14I CCWWGG 1 cut(s) 831
EcoT22I ATGCAT 1 cut(s) 844
ErhI CCWWGG 1 cut(s) 831
Esp3I CGTCTC 2 cut(s) 194, 343
FaeI CATG 4 cut(s) 46, 414, 733, 908
FaqI GGGAC 3 cut(s) 304, 434, 615
FatI CATG 4 cut(s) 42, 410, 729, 904
FauI CCCGC 2 cut(s) 245, 608
Fnu4HI GCNGC 3 cut(s) 381, 805, 939
FokI GGATG 2 cut(s) 404, 493
Fsp4HI GCNGC 3 cut(s) 381, 805, 939
FspBI CTAG 1 cut(s) 11
GluI GCNGC 3 cut(s) 381, 805, 939
HaeIII GGCC 3 cut(s) 283, 645, 830
HapII CCGG 6 cut(s) 352, 377, 510, 541, 552, 572
Hin1II CATG 4 cut(s) 46, 414, 733, 908
HincII GTYRAC 2 cut(s) 475, 567
HindII GTYRAC 2 cut(s) 475, 567
HindIII AAGCTT 1 cut(s) 654
HinfI GANTC 4 cut(s) 152, 503, 754, 767
HpaII CCGG 6 cut(s) 352, 377, 510, 541, 552, 572
HphI GGTGA 5 cut(s) 173, 333, 512, 716, 805
Hpy166II GTNNAC 3 cut(s) 445, 475, 567
Hpy188I TCNGA 7 cut(s) 88, 436, 548, 637, 652, 811, 934
Hpy188III TCNNGA 1 cut(s) 817
Hpy8I GTNNAC 3 cut(s) 445, 475, 567
HpyAV CCTTC 1 cut(s) 188
HpyCH4III ACNGT 6 cut(s) 71, 76, 139, 218, 606, 710
HpyCH4IV ACGT 3 cut(s) 274, 471, 591
HpyCH4V TGCA 4 cut(s) 42, 314, 713, 842
HpyF10VI GCNNNNNNNGC 1 cut(s) 412
HpyF3I CTNAG 5 cut(s) 62, 396, 662, 778, 808
HpySE526I ACGT 3 cut(s) 274, 471, 591
Hsp92II CATG 4 cut(s) 46, 414, 733, 908
KpnI GGTACC 1 cut(s) 75
Kzo9I GATC 3 cut(s) 83, 548, 721
LmnI GCTCC 1 cut(s) 901
Lsp1109I GCAGC 2 cut(s) 367, 925
LweI GCATC 2 cut(s) 323, 382
MaeI CTAG 1 cut(s) 11
MaeII ACGT 3 cut(s) 274, 471, 591
MaeIII GTNAC 4 cut(s) 6, 270, 587, 696
MalI GATC 3 cut(s) 85, 550, 723
MbiI CCGCTC 1 cut(s) 224
MboI GATC 3 cut(s) 83, 548, 721
MboII GAAGA 9 cut(s) 29, 47, 136, 232, 235, 470, 632, 868, 921
MflI RGATCY 2 cut(s) 83, 548
MluCI AATT 3 cut(s) 771, 848, 887
MlyI GAGTC 2 cut(s) 146, 763
MmeI TCCRAC 2 cut(s) 237, 942
Mph1103I ATGCAT 1 cut(s) 844
MroXI GAANNNNTTC 1 cut(s) 948
MseI TTAA 3 cut(s) 324, 851, 988
MspI CCGG 6 cut(s) 352, 377, 510, 541, 552, 572
MspR9I CCNGG 1 cut(s) 377
MvnI CGCG 1 cut(s) 585
MwoI GCNNNNNNNGC 1 cut(s) 412
NciI CCSGG 1 cut(s) 377
NdeII GATC 3 cut(s) 83, 548, 721
NlaIII CATG 4 cut(s) 46, 414, 733, 908
NlaIV GGNNCC 5 cut(s) 73, 422, 550, 603, 646
NmuCI GTSAC 3 cut(s) 6, 270, 696
NsiI ATGCAT 1 cut(s) 844
NspV TTCGAA 1 cut(s) 891
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PdmI GAANNNNTTC 1 cut(s) 948
PfeI GAWTC 2 cut(s) 503, 767
PinAI ACCGGT 2 cut(s) 351, 571
PkrI GCNGC 3 cut(s) 382, 806, 940
PleI GAGTC 2 cut(s) 146, 762
PpsI GAGTC 2 cut(s) 146, 762
PspN4I GGNNCC 5 cut(s) 73, 422, 550, 603, 646
PspPI GGNCC 5 cut(s) 421, 602, 644, 746, 828
PsuI RGATCY 2 cut(s) 83, 548
RsaI GTAC 3 cut(s) 73, 220, 582
RsaNI GTAC 3 cut(s) 72, 219, 581
SaqAI TTAA 3 cut(s) 324, 851, 988
SatI GCNGC 3 cut(s) 381, 805, 939
Sau3AI GATC 3 cut(s) 83, 548, 721
Sau96I GGNCC 5 cut(s) 421, 602, 644, 746, 828
SchI GAGTC 2 cut(s) 146, 763
ScrFI CCNGG 1 cut(s) 377
SfaNI GCATC 2 cut(s) 323, 382
SfuI TTCGAA 1 cut(s) 891
SinI GGWCC 3 cut(s) 421, 602, 746
SmlI CTYRAG 1 cut(s) 817
SmoI CTYRAG 1 cut(s) 817
Sse9I AATT 3 cut(s) 771, 848, 887
SsiI CCGC 9 cut(s) 207, 222, 252, 370, 401, 585, 615, 804, 941
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 375
StyI CCWWGG 1 cut(s) 831
TaaI ACNGT 6 cut(s) 71, 76, 139, 218, 606, 710
TaiI ACGT 3 cut(s) 277, 474, 594
TaqI TCGA 3 cut(s) 561, 765, 891
TasI AATT 3 cut(s) 771, 848, 887
TauI GCSGC 1 cut(s) 807
TfiI GAWTC 2 cut(s) 503, 767
Tru1I TTAA 3 cut(s) 324, 851, 988
Tru9I TTAA 3 cut(s) 324, 851, 988
TscAI CASTG 1 cut(s) 455
TseFI GTSAC 3 cut(s) 6, 270, 696
TseI GCWGC 2 cut(s) 380, 938
Tsp45I GTSAC 3 cut(s) 6, 270, 696
TspDTI ATGAA 2 cut(s) 495, 989
TspGWI ACGGA 2 cut(s) 176, 944
TspRI CASTG 1 cut(s) 455
VpaK11BI GGWCC 3 cut(s) 421, 602, 746
XapI RAATTY 1 cut(s) 887
XmnI GAANNNNTTC 1 cut(s) 948
XspI CTAG 1 cut(s) 11
Zsp2I ATGCAT 1 cut(s) 844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.