Rorug03G0161500

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001599
Physical Location & Seq
Reverse (-)
13394610 .. 13395758
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0161500.1

Sequence Viewer

Length: 648 bp
ATGGCATCCGAGCATTCCAAGTTATGTATCTGCGCAATTACACTGCTCTCTCTAATAATGGCCTCGTCGACAGACGAAATGCCTGCAGTTGGTGAGATTCTATTCCCTACTTCATCTCCATCTCCTTATCCAGAGCCTTCCGAAAGTAGCGGATATTCTTTGCTCTCTTCAGATTCATCAGAACATTCTCCTCCACCATCACCATCTTACATTGACGCCTTAGCCGCTGAAATTGAAGCAGAGCAGCTTAATCTCTCTCCAGACTACTCTCCTTCGCCAGCTCCTTACCCTTCTCCTCCTCCCTACATTGAAGTTGAGGCTCCTGAAATCTATGAGCAAGCTCCAGCACCTGAACCGTCTTCTGTTTTTGGGTCGGGTCAGTCAGCAGATACTGCGTCTGGTTCTCCAGACATGGCTCCTCATCCTACTGTATTGCCATTCGACTACAGAGCAGAGGATGGGAGTGCTGAATTTGAAGGTGAAGATTATAGTTCGGAACGAAGCAAGAATCGGATGACGATGGTCGGATTTGTGATTGGTGCTATTTGCTTGGTGGCATTGGCTGGTTTTTTGTTTAATAAGAAGAAGAAAGACAATAAGCCAAGATCAGAGGACCAGTACGAATTGACCAGGAGGGAGGACGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

215

Amino Acids

23.12

Weight (kDa)

4.26

Isoelectric Point (pI)

87.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 645
Acc16I TGCGCA 1 cut(s) 34
AccI GTMKAC 1 cut(s) 68
AciI CCGC 2 cut(s) 150, 225
AcsI RAATTY 1 cut(s) 470
AcuI CTGAAG 1 cut(s) 153
AcyI GRCGYC 2 cut(s) 216, 642
AfaI GTAC 1 cut(s) 620
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 3 cut(s) 236, 311, 476
AjnI CCWGG 1 cut(s) 629
AluBI AGCT 3 cut(s) 247, 281, 341
AluI AGCT 3 cut(s) 247, 281, 341
AlwNI CAGNNNCTG 2 cut(s) 350, 392
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 244
ApoI RAATTY 1 cut(s) 470
AspLEI GCGC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 613
AsuHPI GGTGA 3 cut(s) 104, 192, 491
AvaII GGWCC 1 cut(s) 613
BbsI GAAGAC 1 cut(s) 351
BbvI GCAGC 1 cut(s) 256
BccI CCATC 5 cut(s) 127, 205, 211, 452, 514
BcgI CGANNNNNNTGC 2 cut(s) 65, 99
BciT130I CCWGG 1 cut(s) 631
BfmI CTRYAG 2 cut(s) 84, 445
BisI GCNGC 2 cut(s) 225, 245
BlsI GCNGC 2 cut(s) 226, 246
Bme1390I CCNGG 1 cut(s) 631
Bme18I GGWCC 1 cut(s) 613
BmgT120I GGNCC 1 cut(s) 613
BmiI GGNNCC 2 cut(s) 321, 417
BmrFI CCNGG 1 cut(s) 631
BmsI GCATC 1 cut(s) 14
BoxI GACNNNNGTC 1 cut(s) 521
BpiI GAAGAC 1 cut(s) 351
BpmI CTGGAG 3 cut(s) 243, 327, 390
Bpu10I CCTNAGC 1 cut(s) 220
BsaHI GRCGYC 2 cut(s) 216, 642
BsaXI ACNNNNNCTCC 2 cut(s) 100, 130
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 616
BseBI CCWGG 1 cut(s) 631
BseGI GGATG 4 cut(s) 5, 421, 463, 519
BseLI CCNNNNNNNGG 1 cut(s) 89
BseNI ACTGG 1 cut(s) 616
BseRI GAGGAG 4 cut(s) 180, 285, 288, 408
BseXI GCAGC 1 cut(s) 256
BshFI GGCC 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 89
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 1 cut(s) 62
Bsp143I GATC 1 cut(s) 605
BspACI CCGC 2 cut(s) 150, 225
BspANI GGCC 1 cut(s) 62
BspLI GGNNCC 2 cut(s) 321, 417
BspMAI CTGCAG 1 cut(s) 88
BsrI ACTGG 1 cut(s) 616
BssMI GATC 1 cut(s) 605
BssNI GRCGYC 2 cut(s) 216, 642
Bst2UI CCWGG 1 cut(s) 631
Bst4CI ACNGT 2 cut(s) 357, 430
Bst6I CTCTTC 1 cut(s) 172
BstACI GRCGYC 2 cut(s) 216, 642
BstAPI GCANNNNNTGC 1 cut(s) 392
BstC8I GCNNGC 3 cut(s) 84, 279, 339
BstDEI CTNAG 1 cut(s) 220
BstF5I GGATG 4 cut(s) 5, 421, 463, 519
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 1 cut(s) 608
BstMBI GATC 1 cut(s) 605
BstMWI GCNNNNNNNGC 2 cut(s) 224, 392
BstNI CCWGG 1 cut(s) 631
BstPAI GACNNNNGTC 1 cut(s) 521
BstSCI CCNGG 1 cut(s) 629
BstSFI CTRYAG 2 cut(s) 84, 445
BstV1I GCAGC 1 cut(s) 256
BstV2I GAAGAC 1 cut(s) 351
BsuRI GGCC 1 cut(s) 62
BtsCI GGATG 4 cut(s) 5, 421, 463, 519
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 3 cut(s) 84, 279, 339
CaiI CAGNNNCTG 2 cut(s) 350, 392
CfoI GCGC 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 613
CseI GACGC 2 cut(s) 224, 384
Csp6I GTAC 1 cut(s) 619
CviAII CATG 1 cut(s) 412
CviQI GTAC 1 cut(s) 619
DdeI CTNAG 1 cut(s) 220
DpnI GATC 1 cut(s) 607
DpnII GATC 1 cut(s) 605
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 613
Eco57I CTGAAG 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 629
FaeI CATG 1 cut(s) 415
FaiI YATR 4 cut(s) 25, 333, 413, 489
FatI CATG 1 cut(s) 411
FblI GTMKAC 1 cut(s) 68
Fnu4HI GCNGC 2 cut(s) 225, 245
FokI GGATG 3 cut(s) 408, 470, 526
Fsp4HI GCNGC 2 cut(s) 225, 245
FspI TGCGCA 1 cut(s) 34
GlaI GCGC 1 cut(s) 34
GluI GCNGC 2 cut(s) 225, 245
GsuI CTGGAG 3 cut(s) 243, 327, 390
HaeIII GGCC 1 cut(s) 62
HgaI GACGC 2 cut(s) 224, 384
HhaI GCGC 1 cut(s) 35
Hin1I GRCGYC 2 cut(s) 216, 642
Hin1II CATG 1 cut(s) 415
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
HinfI GANTC 3 cut(s) 97, 173, 508
HphI GGTGA 3 cut(s) 104, 192, 491
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 9 cut(s) 10, 142, 172, 181, 496, 513, 527, 610, 647
Hpy188III TCNNGA 4 cut(s) 131, 260, 323, 407
Hpy8I GTNNAC 1 cut(s) 69
Hpy99I CGWCG 1 cut(s) 70
HpyAV CCTTC 4 cut(s) 147, 282, 300, 470
HpyCH4III ACNGT 2 cut(s) 357, 430
HpyCH4IV ACGT 1 cut(s) 642
HpyCH4V TGCA 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 392
HpyF3I CTNAG 1 cut(s) 220
HpySE526I ACGT 1 cut(s) 642
Hsp92I GRCGYC 2 cut(s) 216, 642
Hsp92II CATG 1 cut(s) 415
HspAI GCGC 1 cut(s) 33
Kzo9I GATC 1 cut(s) 605
LmnI GCTCC 4 cut(s) 286, 325, 346, 421
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 1 cut(s) 14
MaeII ACGT 1 cut(s) 642
MalI GATC 1 cut(s) 607
MboI GATC 1 cut(s) 605
MboII GAAGA 5 cut(s) 159, 351, 494, 595, 598
MluCI AATT 4 cut(s) 36, 231, 470, 623
MmeI TCCRAC 1 cut(s) 505
MseI TTAA 2 cut(s) 249, 576
MspA1I CMGCKG 1 cut(s) 227
MspR9I CCNGG 1 cut(s) 631
Mva1269I GAATGC 1 cut(s) 13
MvaI CCWGG 1 cut(s) 631
MwoI GCNNNNNNNGC 2 cut(s) 224, 392
NdeII GATC 1 cut(s) 605
NlaIII CATG 1 cut(s) 415
NlaIV GGNNCC 2 cut(s) 321, 417
NsbI TGCGCA 1 cut(s) 34
PctI GAATGC 1 cut(s) 13
PfeI GAWTC 3 cut(s) 97, 173, 508
PkrI GCNGC 2 cut(s) 226, 246
PshAI GACNNNNGTC 1 cut(s) 521
Psp6I CCWGG 1 cut(s) 629
PspGI CCWGG 1 cut(s) 629
PspN4I GGNNCC 2 cut(s) 321, 417
PspPI GGNCC 1 cut(s) 613
PstI CTGCAG 1 cut(s) 88
PstNI CAGNNNCTG 2 cut(s) 350, 392
RsaI GTAC 1 cut(s) 620
RsaNI GTAC 1 cut(s) 619
SalI GTCGAC 1 cut(s) 67
SaqAI TTAA 2 cut(s) 249, 576
SatI GCNGC 2 cut(s) 225, 245
Sau3AI GATC 1 cut(s) 605
Sau96I GGNCC 1 cut(s) 613
ScrFI CCNGG 1 cut(s) 631
SetI ASST 6 cut(s) 249, 283, 343, 352, 481, 645
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 2 cut(s) 84, 445
SinI GGWCC 1 cut(s) 613
Sse9I AATT 4 cut(s) 36, 231, 470, 623
SsiI CCGC 2 cut(s) 150, 225
StyD4I CCNGG 1 cut(s) 629
TaaI ACNGT 2 cut(s) 357, 430
TaiI ACGT 1 cut(s) 645
TaqI TCGA 2 cut(s) 68, 441
TasI AATT 4 cut(s) 36, 231, 470, 623
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 3 cut(s) 97, 173, 508
Tru1I TTAA 2 cut(s) 249, 576
Tru9I TTAA 2 cut(s) 249, 576
TscAI CASTG 1 cut(s) 48
TseI GCWGC 1 cut(s) 244
TspDTI ATGAA 2 cut(s) 102, 165
TspRI CASTG 1 cut(s) 48
VpaK11BI GGWCC 1 cut(s) 613
XapI RAATTY 1 cut(s) 470
XmiI GTMKAC 1 cut(s) 68
ZraI GACGTC 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.