Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001456

Physical Location & Seq

Genomic Coordinates Forward (+)

2204206 .. 2205965

Gene Structure 1760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G07100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGGCTCTTTTGATCGCCAAAGAGCTGTTCCGAAATTCAAAACAGCAACACCGTCACCGCTCCCTCTTTCTCCTTCGCCTTACTTCACTATGCCTCCTGGCCTTACTCCCGCCGACTTTCTCGACTCTCCTCTTCTCTTCACTTCCTCCAACATTTTGCCGTCTCCTACGACAGGCACATTTCCAGCGCAATCTCTGAACTATAACAATAACGGTTTGCTCATTGACAAAAATGAAATCAAATATGAAGACACAACTCCTCCCTTGTTCCTACCATCTATGGTAACTCAGCCTTTACCTCAACTGGATTTATTCAAATCCGAAATCATGTCGAGTAACAAAACCTCTGATGACGGCTACAATTGGCGCAAATACGGGCAGAAGCAAGTCAAAGGAAGCGAAAACCCGAGGAGTTACTTCAAATGCACGTATCCAAATTGTCTCACAAAGAAGAAAGTAGAGACGTCTCTTGTGAAGGGTCAGATGATTGAGATTGTCTATAAAGGAAGCCACAATCATCCCAAGCCCCAATCCACGAAGCGATCATCTTCCACCGCTATAGCAGCACATCAGAACAGCAGTAATGGAGACGGTAAAGACATTGGTGAAGATGAAACAGAGGCCAAGAGATGGAAAAGAGAAGAGAATGTGAAGGAGCCAAGAGTGGTGGTTCAGACAACAAGTGATATAGACATTCTTGACGATGGCTACAGATGGAGAAAGTATGGTCAGAAAGTCGTCAAGGGTAATCCAAATCCAAGGAGCTATTACAAGTGCACATTTACAGGATGTTTTGTAAGGAAACACGTTGAAAGAGCATTTCAAGATCCCAAGTCAGTGATCACAACTTACGAAGGAAAACACAAACACCAAATCCCGACCCCAAGAAGAGGTCCAGTTTTAAGGTTACTTGGAAAAACAGAGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009403 GO:0009404 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009700 GO:0009889 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010035 GO:0010120 GO:0010200 GO:0010243 GO:0010286 GO:0010468 GO:0010506 GO:0010508 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0031323 GO:0031325 GO:0031326 GO:0031329 GO:0031331 GO:0033554 GO:0034605 GO:0034641 GO:0042221 GO:0042430 GO:0042435 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044424 GO:0044464 GO:0044550 GO:0046217 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0070370 GO:0071704 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

309

Amino Acids

34.91

Weight (kDa)

9.53

Isoelectric Point (pI)

57.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	24 - 81	6.3e-26	WRKY DNA -binding domain
WRKY	PF03106	141 - 198	1.5e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07100 AT5G07100 AT5G07100 AT5G07100 AT5G07100
fragaria_vesca	FvH4_3g39850 FvH4_3g39850 FvH4_3g39850 FvH4_3g39850 FvH4_3g39850 FvH4_6g10510 FvH4_6g10510 FvH4_6g10510 FvH4_6g10510 FvH4_6g10510 FvH4_6g10510 FvH4_6g10510 FvH4_6g10510
malus_domestica	MD03G1057400.v1.1 MD04G1167700.v1.1 MD06G1115200.v1.1 MD11G1059400.v1.1 MD12G1181000.v1.1
prunus_persica	Prupe.6G046900_v2.0.a1 Prupe.6G286000_v2.0.a1
pyrus_communis	pycom03g04580 pycom04g14890 pycom06g10790 pycom11g04930 pycom12g17060
rosa_chinensis	RchiOBHm_Chr3g0461481 RchiOBHm_Chr5g0071811
rosa_laevigata	RLG00000024931 RLG00000036250
rosa_multiflora	Rmu_sc0002677.1_g000005 Rmu_ssc0000127.1_g000054
rosa_roxburghii	Rroxscaffold_1G00009350 Rroxscaffold_6G00418250 Rroxscaffold_6G00418580
rosa_rugosa	Rorug03G0051000 Rorug03G0051100.1 Rorug05G0414700
rosa_samantha	Rh3AG108800 Rh3BG112700 Rh3CG114200 Rh3DG114300 Rh5AG471000 Rh5BG490700 Rh5CG514700 Rh5DG502000
rosa_wichuraiana	Rw3G009250 Rw5G043770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	467
AccB7I	CCANNNNNTGG	1 cut(s)	630
AccBSI	CCGCTC	1 cut(s)	61
AciI	CCGC	3 cut(s)	59, 111, 555
AclWI	GGATC	1 cut(s)	821
AcsI	RAATTY	1 cut(s)	35
AcyI	GRCGYC	1 cut(s)	464
AfiI	CCNNNNNNNGG	3 cut(s)	173, 630, 890
AflIII	ACRYGT	1 cut(s)	805
AgsI	TTSAA	5 cut(s)	40, 316, 421, 812, 824
AjnI	CCWGG	1 cut(s)	97
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AluBI	AGCT	2 cut(s)	26, 765
AluI	AGCT	2 cut(s)	26, 765
Alw21I	GWGCWC	1 cut(s)	779
Alw26I	GTCTC	6 cut(s)	168, 446, 455, 471, 582, 917
Alw44I	GTGCAC	1 cut(s)	775
AlwI	GGATC	1 cut(s)	821
Ama87I	CYCGRG	1 cut(s)	406
AoxI	GGCC	2 cut(s)	100, 621
ApaLI	GTGCAC	1 cut(s)	775
ApeKI	GCWGC	1 cut(s)	563
ApoI	RAATTY	1 cut(s)	35
AspLEI	GCGC	2 cut(s)	190, 369
AspS9I	GGNCC	1 cut(s)	893
AsuHPI	GGTGA	2 cut(s)	48, 617
AvaI	CYCGRG	1 cut(s)	406
AvaII	GGWCC	1 cut(s)	893
BaeGI	GKGCMC	1 cut(s)	779
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	779
BbvI	GCAGC	1 cut(s)	575
BccI	CCATC	4 cut(s)	283, 624, 698, 708
BceAI	ACGGC	2 cut(s)	145, 370
BciT130I	CCWGG	1 cut(s)	99
BciVI	GTATCC	1 cut(s)	441
BclI	TGATCA	1 cut(s)	840
BcoDI	GTCTC	6 cut(s)	168, 446, 455, 471, 582, 917
BfmI	CTRYAG	2 cut(s)	558, 709
BfuI	GTATCC	1 cut(s)	441
BisI	GCNGC	1 cut(s)	564
BlsI	GCNGC	1 cut(s)	565
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	1 cut(s)	893
BmeT110I	CYCGRG	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	893
BmiI	GGNNCC	1 cut(s)	657
BmrFI	CCNGG	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	255
BsaAI	YACGTR	1 cut(s)	429
BsaHI	GRCGYC	1 cut(s)	464
BsaJI	CCNNGG	2 cut(s)	407, 758
BsaXI	ACNNNNNCTCC	4 cut(s)	79, 109, 244, 274
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 630, 890
Bse1I	ACTGG	2 cut(s)	309, 896
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	2 cut(s)	407, 758
BseGI	GGATG	2 cut(s)	517, 794
BseLI	CCNNNNNNNGG	3 cut(s)	173, 630, 890
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	2 cut(s)	309, 896
BseRI	GAGGAG	3 cut(s)	120, 249, 424
BseSI	GKGCMC	1 cut(s)	779
BseXI	GCAGC	1 cut(s)	575
BshFI	GGCC	2 cut(s)	102, 623
BsiHKAI	GWGCWC	1 cut(s)	779
BsiHKCI	CYCGRG	1 cut(s)	406
BslI	CCNNNNNNNGG	3 cut(s)	173, 630, 890
BsmAI	GTCTC	6 cut(s)	168, 446, 455, 471, 582, 917
BsmBI	CGTCTC	4 cut(s)	168, 455, 471, 582
BsnI	GGCC	2 cut(s)	102, 623
BsoBI	CYCGRG	1 cut(s)	406
Bsp1286I	GDGCHC	2 cut(s)	8, 779
Bsp143I	GATC	4 cut(s)	13, 542, 826, 840
BspACI	CCGC	3 cut(s)	59, 111, 555
BspANI	GGCC	2 cut(s)	102, 623
BspCNI	CTCAG	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	657
BspPI	GGATC	1 cut(s)	821
BsrBI	CCGCTC	1 cut(s)	61
BsrI	ACTGG	2 cut(s)	309, 896
BssECI	CCNNGG	2 cut(s)	407, 758
BssMI	GATC	4 cut(s)	13, 542, 826, 840
BssNI	GRCGYC	1 cut(s)	464
BssT1I	CCWWGG	1 cut(s)	758
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	3 cut(s)	54, 215, 593
Bst6I	CTCTTC	4 cut(s)	138, 143, 636, 883
BstACI	GRCGYC	1 cut(s)	464
BstBAI	YACGTR	1 cut(s)	429
BstDEI	CTNAG	1 cut(s)	288
BstENI	CCTNNNNNAGG	1 cut(s)	171
BstF5I	GGATG	2 cut(s)	517, 794
BstHHI	GCGC	2 cut(s)	190, 369
BstKTI	GATC	4 cut(s)	16, 545, 829, 843
BstMAI	GTCTC	6 cut(s)	168, 446, 455, 471, 582, 917
BstMBI	GATC	4 cut(s)	13, 542, 826, 840
BstMWI	GCNNNNNNNGC	1 cut(s)	563
BstNI	CCWGG	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	97
BstSFI	CTRYAG	2 cut(s)	558, 709
BstSLI	GKGCMC	1 cut(s)	779
BstV1I	GCAGC	1 cut(s)	575
BstV2I	GAAGAC	1 cut(s)	255
BstX2I	RGATCY	1 cut(s)	826
BstYI	RGATCY	1 cut(s)	826
BsuI	GTATCC	1 cut(s)	441
BsuRI	GGCC	2 cut(s)	102, 623
BtsCI	GGATG	2 cut(s)	517, 794
BtsIMutI	CAGTG	1 cut(s)	843
CfoI	GCGC	2 cut(s)	190, 369
Cfr13I	GGNCC	1 cut(s)	893
CspCI	CAANNNNNGTGG	2 cut(s)	648, 683
CviAII	CATG	1 cut(s)	328
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	4 cut(s)	15, 544, 828, 842
DpnII	GATC	4 cut(s)	13, 542, 826, 840
Eam1104I	CTCTTC	4 cut(s)	138, 143, 636, 883
EarI	CTCTTC	4 cut(s)	138, 143, 636, 883
Eco130I	CCWWGG	1 cut(s)	758
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	893
Eco88I	CYCGRG	1 cut(s)	406
EcoNI	CCTNNNNNAGG	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	758
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	758
Esp3I	CGTCTC	4 cut(s)	168, 455, 471, 582
FaeI	CATG	1 cut(s)	331
FatI	CATG	1 cut(s)	327
FauI	CCCGC	1 cut(s)	118
FbaI	TGATCA	1 cut(s)	840
Fnu4HI	GCNGC	1 cut(s)	564
FokI	GGATG	2 cut(s)	504, 801
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	564
GlaI	GCGC	2 cut(s)	189, 368
GluI	GCNGC	1 cut(s)	564
HaeIII	GGCC	2 cut(s)	102, 623
HhaI	GCGC	2 cut(s)	190, 369
Hin1I	GRCGYC	1 cut(s)	464
Hin1II	CATG	1 cut(s)	331
Hin6I	GCGC	2 cut(s)	188, 367
HinP1I	GCGC	2 cut(s)	188, 367
HinfI	GANTC	1 cut(s)	125
HphI	GGTGA	2 cut(s)	48, 617
Hpy166II	GTNNAC	1 cut(s)	777
Hpy188I	TCNGA	8 cut(s)	33, 198, 322, 349, 483, 573, 675, 732
Hpy188III	TCNNGA	4 cut(s)	122, 698, 824, 877
Hpy8I	GTNNAC	1 cut(s)	777
HpyAV	CCTTC	4 cut(s)	84, 469, 646, 848
HpyCH4III	ACNGT	3 cut(s)	54, 215, 593
HpyCH4IV	ACGT	3 cut(s)	428, 464, 807
HpyCH4V	TGCA	2 cut(s)	426, 777
HpyF10VI	GCNNNNNNNGC	1 cut(s)	563
HpyF3I	CTNAG	1 cut(s)	288
HpySE526I	ACGT	3 cut(s)	428, 464, 807
Hsp92I	GRCGYC	1 cut(s)	464
Hsp92II	CATG	1 cut(s)	331
HspAI	GCGC	2 cut(s)	188, 367
Ksp22I	TGATCA	1 cut(s)	840
Kzo9I	GATC	4 cut(s)	13, 542, 826, 840
LmnI	GCTCC	3 cut(s)	66, 655, 762
LpnPI	CCDG	7 cut(s)	84, 111, 159, 198, 290, 771, 909
Lsp1109I	GCAGC	1 cut(s)	575
MaeII	ACGT	3 cut(s)	428, 464, 807
MaeIII	GTNAC	5 cut(s)	54, 283, 335, 413, 906
MalI	GATC	4 cut(s)	15, 544, 828, 842
MbiI	CCGCTC	1 cut(s)	61
MboI	GATC	4 cut(s)	13, 542, 826, 840
MboII	GAAGA	8 cut(s)	125, 130, 260, 463, 540, 620, 653, 900
MfeI	CAATTG	1 cut(s)	361
MflI	RGATCY	1 cut(s)	826
MhlI	GDGCHC	2 cut(s)	8, 779
MluCI	AATT	3 cut(s)	35, 361, 436
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	174
MseI	TTAA	1 cut(s)	902
MspR9I	CCNGG	1 cut(s)	99
MunI	CAATTG	1 cut(s)	361
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	563
NdeII	GATC	4 cut(s)	13, 542, 826, 840
NlaIII	CATG	1 cut(s)	331
NlaIV	GGNNCC	1 cut(s)	657
NmuCI	GTSAC	1 cut(s)	54
PflMI	CCANNNNNTGG	1 cut(s)	630
PkrI	GCNGC	1 cut(s)	565
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Ppu21I	YACGTR	1 cut(s)	429
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	1 cut(s)	657
PspPI	GGNCC	1 cut(s)	893
PsuI	RGATCY	1 cut(s)	826
SaqAI	TTAA	1 cut(s)	902
SatI	GCNGC	1 cut(s)	564
Sau3AI	GATC	4 cut(s)	13, 542, 826, 840
Sau96I	GGNCC	1 cut(s)	893
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	2 cut(s)	8, 779
SetI	ASST	9 cut(s)	28, 301, 347, 431, 467, 767, 810, 895, 908
SfcI	CTRYAG	2 cut(s)	558, 709
SinI	GGWCC	1 cut(s)	893
Sse9I	AATT	3 cut(s)	35, 361, 436
SsiI	CCGC	3 cut(s)	59, 111, 555
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	1 cut(s)	758
TaaI	ACNGT	3 cut(s)	54, 215, 593
TaiI	ACGT	3 cut(s)	431, 467, 810
TaqI	TCGA	2 cut(s)	123, 332
TasI	AATT	3 cut(s)	35, 361, 436
Tru1I	TTAA	1 cut(s)	902
Tru9I	TTAA	1 cut(s)	902
TscAI	CASTG	1 cut(s)	843
TseFI	GTSAC	1 cut(s)	54
TseI	GCWGC	1 cut(s)	563
Tsp45I	GTSAC	1 cut(s)	54
TspDTI	ATGAA	3 cut(s)	249, 261, 627
TspRI	CASTG	1 cut(s)	843
Van91I	CCANNNNNTGG	1 cut(s)	630
VneI	GTGCAC	1 cut(s)	775
VpaK11BI	GGWCC	1 cut(s)	893
XagI	CCTNNNNNAGG	1 cut(s)	171
XapI	RAATTY	1 cut(s)	35
ZraI	GACGTC	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.