Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001456

Physical Location & Seq

Genomic Coordinates Reverse (-)

77643800 .. 77647928

Gene Structure 4129 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34683

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1872 bp

ATGGCCTCCTCTTCCGGGAGCTTAGACACCTCCGCAAATTCTCACCCGAGCAACTTCACCTTCTCCACCCACCCATTCATGACCACCTCCTTCTCCGACCTCTTATCCTCGGGCGCCGACACCACAAACCCAATAGCCACCGTAACCCGAAACTCCGGGTACGGGTTATCGGATCGTATTGCGGAGCGAACGGGGTCGGGTGTCCCCAAGTTCAAGTCCCTCCCGCCTCCCCAGCTCCCCATTTCGCCTCCCTCTGTTGTGTCTCCCTCTTCCTACTTTGCAATCCCACCTGGGATGAGCCCCGCCGAGCTTCTCGACTCTCCTGTGCTTCTCAGCTCTTCCAACATTCTTCCATCTCCAACTACTGGGAGTTTTGCAGCTCAAGCCTTTAATTGGAGGACCAATTCTGGTTCTGGTACTAACAACAATAACAACAACCGGAGTGTTAAAGAGGAGCACAAGAACTACTCAGATTTCTCTTTCCAAACCCAAACCAGGGCCCTTCCTACTTCATCATCAGCAATTTTCCAATCCTCAAACAGCTCAATTCAGACTGCACAAGAGCAGGCATGGAATAACTATCTAGGACCTCCCAAACAAGATAACTTTTCTTCAGGGAAGAGTATGGTGAAACCTGAGTATGGTTCTTCAGTGCAGAGCTTCTCTTCTGAAATGGGGACTAATATGCAGAGCAATAACAATGCTCAGCCCAACAGCAGTGGTGGTTTCCAATCAGATCAGTACGGCAACTACAATAACAACAGCAACAACAACCAGCTGCAATCCCATCAGTGCTTGAACAGGAGATCAGATGATGGGTTCAATTGGAGGAAATATGGCCAGAAACAAGTGAAGGGAAGCGAAAATCCGCGGAGCTATTACAAGTGTACTTATCCGAATTGCCCAACTAAGAAAAAGGTTGAGAGGTCGTTGGATGGACAAATCACCGAGATAGTTTACAAGGGTAATCATAATCATCCCAAGCCACAGAATACTAGAAGGTCGGGTTCATCAGCGGCTTCTTCCCATGCAATCCAGGCTTCCAATCACACCACCAATGACATCCCGGATCAGTCTTTCGGCTCTCATGGTAATTCACAAATGGATAACTCCATTGGAACACCGGAGAATTCATCCAATTTTTCAAATGGGGATGATGAGTTAGATCAGAGCTCTCAGAGAAGCAAGTCAGGAGGAGGGGATGAGTATGATGAGGATGAGCCTAATGCCAAAAGATGGAAAAAAGAAGGTGACAATGAATGTATTTCAGCACCTGGTAGTAGAACAGTGAGAGAACCAAGAGTTGTAGTTCAAACAACAAGTGACATTGATATTCTTGATGATGGGTATAGGTGGAGGAAGTATGGTCAGAAAGTAGTAAAGGGCAACCCAAATCCAAGGAGCTACTACAAGTGCACAAATCCAGGCTGTCCAGTGAGGAAGCACGTAGAGCGAGCTTCACATGATCTTAGAGCAGTGATCACAACCTACGAAGGGAAGCACAACCATGATGTTCCTGCAGCCCGTGGCAGTGGTTCTGCCAACAGGCCTTTACCAAGCCACAATACCAACAACAACAACAACATGAACAACAACCACAATGTACCCACAGCAATGAGGCCTATGACCCATCACAGTACTAACAATGCTGCTAACAACAACCCTCTTGACAATCTAAGGCTACCGACATCAGAAGGGCAAGCACCCTTTACTCTCGAGATGTTGCAGAGCCCAGCAAGTTATGGATTTGCAGGGTTTGATAACCCCATGGGGTCATACATGAACCAAACACAGCTCAATGACAACAACATTTTTTCTAAAACCAAGGACGAGCCAAGAGATGACGCATTTTTTGAATCATTGCTGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009403 GO:0009404 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009700 GO:0009889 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010035 GO:0010120 GO:0010200 GO:0010243 GO:0010286 GO:0010468 GO:0010506 GO:0010508 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0031323 GO:0031325 GO:0031326 GO:0031329 GO:0031331 GO:0033554 GO:0034605 GO:0034641 GO:0042221 GO:0042430 GO:0042435 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044424 GO:0044464 GO:0044550 GO:0046217 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0070370 GO:0071704 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

623

Amino Acids

68.2

Weight (kDa)

7.28

Isoelectric Point (pI)

51.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	271 - 327	1.6e-26	WRKY DNA -binding domain
WRKY	PF03106	447 - 504	2.3e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07100 AT5G07100 AT5G07100 AT5G07100 AT5G07100
fragaria_vesca	FvH4_3g39850 FvH4_3g39850 FvH4_3g39850 FvH4_3g39850 FvH4_3g39850 FvH4_6g10510 FvH4_6g10510 FvH4_6g10510 FvH4_6g10510 FvH4_6g10510 FvH4_6g10510 FvH4_6g10510 FvH4_6g10510
malus_domestica	MD03G1057400.v1.1 MD04G1167700.v1.1 MD06G1115200.v1.1 MD11G1059400.v1.1 MD12G1181000.v1.1
prunus_persica	Prupe.6G046900_v2.0.a1 Prupe.6G286000_v2.0.a1
pyrus_communis	pycom03g04580 pycom04g14890 pycom06g10790 pycom11g04930 pycom12g17060
rosa_chinensis	RchiOBHm_Chr3g0461481 RchiOBHm_Chr5g0071811
rosa_laevigata	RLG00000024931 RLG00000036250
rosa_multiflora	Rmu_sc0002677.1_g000005 Rmu_ssc0000127.1_g000054
rosa_roxburghii	Rroxscaffold_1G00009350 Rroxscaffold_6G00418250 Rroxscaffold_6G00418580
rosa_rugosa	Rorug03G0051000 Rorug03G0051100.1 Rorug05G0414700
rosa_samantha	Rh3AG108800 Rh3BG112700 Rh3CG114200 Rh3DG114300 Rh5AG471000 Rh5BG490700 Rh5CG514700 Rh5DG502000
rosa_wichuraiana	Rw3G009250 Rw5G043770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	113
AccB7I	CCANNNNNTGG	2 cut(s)	365, 1236
AccII	CGCG	1 cut(s)	871
AciI	CCGC	7 cut(s)	33, 182, 224, 303, 869, 871, 1016
AclWI	GGATC	2 cut(s)	180, 1077
AcoI	YGGCCR	1 cut(s)	838
AcsI	RAATTY	2 cut(s)	37, 1129
AcuI	CTGAAG	2 cut(s)	597, 633
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	6 cut(s)	161, 418, 743, 889, 1605, 1639
AfiI	CCNNNNNNNGG	9 cut(s)	15, 162, 365, 393, 495, 496, 641, 1236, 1494
AgsI	TTSAA	6 cut(s)	214, 799, 823, 1146, 1313, 1856
AjnI	CCWGG	5 cut(s)	289, 494, 1035, 1273, 1423
Alw21I	GWGCWC	3 cut(s)	459, 1175, 1418
Alw26I	GTCTC	1 cut(s)	267
Alw44I	GTGCAC	1 cut(s)	1414
AlwI	GGATC	2 cut(s)	180, 1077
AlwNI	CAGNNNCTG	1 cut(s)	1274
Ama87I	CYCGRG	3 cut(s)	46, 109, 1715
AoxI	GGCC	5 cut(s)	3, 498, 838, 1547, 1619
ApaI	GGGCCC	1 cut(s)	502
ApaLI	GTGCAC	1 cut(s)	1414
ApeKI	GCWGC	4 cut(s)	377, 778, 1520, 1649
ApoI	RAATTY	2 cut(s)	37, 1129
ArsI	GACNNNNNNTTYG	2 cut(s)	1835, 1867
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	4 cut(s)	399, 498, 499, 587
AsuC2I	CCSGG	3 cut(s)	16, 157, 1067
AsuHPI	GGTGA	5 cut(s)	35, 49, 640, 937, 1262
AvaI	CYCGRG	3 cut(s)	46, 109, 1715
AvaII	GGWCC	2 cut(s)	399, 587
BaeGI	GKGCMC	2 cut(s)	502, 1418
BalI	TGGCCA	1 cut(s)	840
BanI	GGYRCC	1 cut(s)	113
BanII	GRGCYC	4 cut(s)	302, 502, 1175, 1733
Bbv12I	GWGCWC	3 cut(s)	459, 1175, 1418
BbvI	GCAGC	4 cut(s)	389, 765, 1532, 1636
BccI	CCATC	7 cut(s)	361, 795, 809, 929, 1230, 1337, 1638
BceAI	ACGGC	1 cut(s)	760
BciT130I	CCWGG	5 cut(s)	291, 496, 1037, 1275, 1425
BclI	TGATCA	1 cut(s)	1479
BcnI	CCSGG	3 cut(s)	16, 157, 1067
BcoDI	GTCTC	1 cut(s)	267
BfaI	CTAG	2 cut(s)	584, 996
BfmI	CTRYAG	1 cut(s)	1518
BfoI	RGCGCY	1 cut(s)	117
BisI	GCNGC	5 cut(s)	378, 779, 1017, 1521, 1650
BlpI	GCTNAGC	1 cut(s)	705
BlsI	GCNGC	5 cut(s)	379, 780, 1018, 1522, 1651
BmcAI	AGTACT	1 cut(s)	1639
Bme1390I	CCNGG	8 cut(s)	16, 157, 291, 496, 1037, 1067, 1275, 1425
Bme18I	GGWCC	2 cut(s)	399, 587
BmeT110I	CYCGRG	3 cut(s)	46, 109, 1715
BmgT120I	GGNCC	4 cut(s)	399, 498, 499, 587
BmiI	GGNNCC	2 cut(s)	115, 500
BmrFI	CCNGG	8 cut(s)	16, 157, 291, 496, 1037, 1067, 1275, 1425
BmrI	ACTGGG	1 cut(s)	375
BmuI	ACTGGG	1 cut(s)	375
Bpu1102I	GCTNAGC	1 cut(s)	705
BpuEI	CTTGAG	1 cut(s)	366
BpuMI	CCSGG	3 cut(s)	16, 157, 1067
BsaAI	YACGTR	1 cut(s)	1447
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	8 cut(s)	108, 290, 495, 869, 1397, 1525, 1767, 1824
BsaWI	WCCGGW	2 cut(s)	438, 1123
Bsc4I	CCNNNNNNNGG	9 cut(s)	15, 162, 365, 393, 495, 496, 641, 1236, 1494
Bse1I	ACTGG	2 cut(s)	370, 1433
Bse3DI	GCAATG	2 cut(s)	1620, 1859
BseBI	CCWGG	5 cut(s)	291, 496, 1037, 1275, 1425
BseDI	CCNNGG	8 cut(s)	108, 290, 495, 869, 1397, 1525, 1767, 1824
BseGI	GGATG	8 cut(s)	300, 940, 976, 1062, 1133, 1159, 1207, 1222
BseLI	CCNNNNNNNGG	9 cut(s)	15, 162, 365, 393, 495, 496, 641, 1236, 1494
BseMI	GCAATG	2 cut(s)	1620, 1859
BseMII	CTCAG	5 cut(s)	346, 483, 627, 719, 1190
BseNI	ACTGG	2 cut(s)	370, 1433
BseRI	GAGGAG	2 cut(s)	467, 1209
BseSI	GKGCMC	2 cut(s)	502, 1418
BseXI	GCAGC	4 cut(s)	389, 765, 1532, 1636
BseYI	CCCAGC	2 cut(s)	231, 1732
BsgI	GTGCAG	2 cut(s)	540, 674
Bsh1236I	CGCG	1 cut(s)	871
BshFI	GGCC	5 cut(s)	5, 500, 840, 1549, 1621
BshNI	GGYRCC	1 cut(s)	113
BsiHKAI	GWGCWC	3 cut(s)	459, 1175, 1418
BsiHKCI	CYCGRG	3 cut(s)	46, 109, 1715
BsiSI	CCGG	5 cut(s)	15, 156, 439, 1067, 1124
BslFI	GGGAC	3 cut(s)	188, 202, 691
BslI	CCNNNNNNNGG	9 cut(s)	15, 162, 365, 393, 495, 496, 641, 1236, 1494
BsmAI	GTCTC	1 cut(s)	267
BsmFI	GGGAC	3 cut(s)	188, 202, 691
BsnI	GGCC	5 cut(s)	5, 500, 840, 1549, 1621
BsoBI	CYCGRG	3 cut(s)	46, 109, 1715
Bsp120I	GGGCCC	1 cut(s)	498
Bsp1286I	GDGCHC	6 cut(s)	302, 459, 502, 1175, 1418, 1733
Bsp143I	GATC	7 cut(s)	172, 736, 806, 1069, 1165, 1465, 1479
Bsp1720I	GCTNAGC	1 cut(s)	705
Bsp19I	CCATGG	1 cut(s)	1767
BspACI	CCGC	7 cut(s)	33, 182, 224, 303, 869, 871, 1016
BspANI	GGCC	5 cut(s)	5, 500, 840, 1549, 1621
BspCNI	CTCAG	5 cut(s)	345, 482, 628, 718, 1189
BspFNI	CGCG	1 cut(s)	871
BspHI	TCATGA	1 cut(s)	78
BspLI	GGNNCC	2 cut(s)	115, 500
BspMAI	CTGCAG	1 cut(s)	1522
BspPI	GGATC	2 cut(s)	180, 1077
BspQI	GCTCTTC	1 cut(s)	343
BspT107I	GGYRCC	1 cut(s)	113
BsrDI	GCAATG	2 cut(s)	1620, 1859
BsrI	ACTGG	2 cut(s)	370, 1433
BssECI	CCNNGG	8 cut(s)	108, 290, 495, 869, 1397, 1525, 1767, 1824
BssMI	GATC	7 cut(s)	172, 736, 806, 1069, 1165, 1465, 1479
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	3 cut(s)	1397, 1767, 1824
Bst2UI	CCWGG	5 cut(s)	291, 496, 1037, 1275, 1425
Bst4CI	ACNGT	3 cut(s)	142, 1288, 1637
Bst6I	CTCTTC	5 cut(s)	16, 274, 343, 614, 670
BstACI	GRCGYC	1 cut(s)	114
BstBAI	YACGTR	1 cut(s)	1447
BstC8I	GCNNGC	3 cut(s)	567, 1455, 1701
BstDEI	CTNAG	9 cut(s)	22, 332, 469, 636, 705, 909, 1176, 1469, 1676
BstDSI	CCRYGG	3 cut(s)	869, 1525, 1767
BstF5I	GGATG	8 cut(s)	300, 940, 976, 1062, 1133, 1159, 1207, 1222
BstFNI	CGCG	1 cut(s)	871
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	7 cut(s)	175, 739, 809, 1072, 1168, 1468, 1482
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	7 cut(s)	172, 736, 806, 1069, 1165, 1465, 1479
BstMWI	GCNNNNNNNGC	4 cut(s)	232, 383, 1037, 1450
BstNI	CCWGG	5 cut(s)	291, 496, 1037, 1275, 1425
BstSCI	CCNGG	8 cut(s)	14, 155, 289, 494, 1035, 1065, 1273, 1423
BstSFI	CTRYAG	1 cut(s)	1518
BstSLI	GKGCMC	2 cut(s)	502, 1418
BstUI	CGCG	1 cut(s)	871
BstV1I	GCAGC	4 cut(s)	389, 765, 1532, 1636
BsuRI	GGCC	5 cut(s)	5, 500, 840, 1549, 1621
BtgI	CCRYGG	3 cut(s)	869, 1525, 1767
BtsCI	GGATG	8 cut(s)	300, 940, 976, 1062, 1133, 1159, 1207, 1222
BtsI	GCAGTG	3 cut(s)	724, 1482, 1537
BtsIMutI	CAGTG	7 cut(s)	657, 724, 797, 1293, 1440, 1482, 1537
Cac8I	GCNNGC	3 cut(s)	567, 1455, 1701
CaiI	CAGNNNCTG	1 cut(s)	1274
CciI	TCATGA	1 cut(s)	78
CfoI	GCGC	1 cut(s)	116
Cfr13I	GGNCC	4 cut(s)	399, 498, 499, 587
Cfr42I	CCGCGG	1 cut(s)	872
CseI	GACGC	1 cut(s)	1853
CsiI	ACCWGGT	1 cut(s)	1273
Csp6I	GTAC	6 cut(s)	160, 417, 742, 888, 1604, 1638
CspCI	CAANNNNNGTGG	2 cut(s)	700, 735
CviAII	CATG	9 cut(s)	79, 570, 1028, 1088, 1463, 1508, 1585, 1768, 1780
CviQI	GTAC	6 cut(s)	160, 417, 742, 888, 1604, 1638
DdeI	CTNAG	9 cut(s)	22, 332, 469, 636, 705, 909, 1176, 1469, 1676
DinI	GGCGCC	1 cut(s)	115
DpnI	GATC	7 cut(s)	174, 738, 808, 1071, 1167, 1467, 1481
DpnII	GATC	7 cut(s)	172, 736, 806, 1069, 1165, 1465, 1479
EaeI	YGGCCR	1 cut(s)	838
Eam1104I	CTCTTC	5 cut(s)	16, 274, 343, 614, 670
EarI	CTCTTC	5 cut(s)	16, 274, 343, 614, 670
Ecl136II	GAGCTC	1 cut(s)	1173
Eco130I	CCWWGG	3 cut(s)	1397, 1767, 1824
Eco147I	AGGCCT	2 cut(s)	1549, 1621
Eco24I	GRGCYC	4 cut(s)	302, 502, 1175, 1733
Eco47I	GGWCC	2 cut(s)	399, 587
Eco53kI	GAGCTC	1 cut(s)	1173
Eco57I	CTGAAG	2 cut(s)	597, 633
Eco88I	CYCGRG	3 cut(s)	46, 109, 1715
EcoICRI	GAGCTC	1 cut(s)	1173
EcoO109I	RGGNCCY	3 cut(s)	498, 499, 587
EcoRI	GAATTC	1 cut(s)	1129
EcoRII	CCWGG	5 cut(s)	289, 494, 1035, 1273, 1423
EcoT14I	CCWWGG	3 cut(s)	1397, 1767, 1824
EcoT38I	GRGCYC	4 cut(s)	302, 502, 1175, 1733
EgeI	GGCGCC	1 cut(s)	115
EheI	GGCGCC	1 cut(s)	115
ErhI	CCWWGG	3 cut(s)	1397, 1767, 1824
FaeI	CATG	9 cut(s)	82, 573, 1031, 1091, 1466, 1511, 1588, 1771, 1783
FaqI	GGGAC	3 cut(s)	188, 202, 691
FatI	CATG	9 cut(s)	78, 569, 1027, 1087, 1462, 1507, 1584, 1767, 1779
FauI	CCCGC	2 cut(s)	231, 310
FbaI	TGATCA	1 cut(s)	1479
Fnu4HI	GCNGC	5 cut(s)	378, 779, 1017, 1521, 1650
FokI	GGATG	8 cut(s)	307, 947, 963, 1049, 1120, 1166, 1214, 1229
FriOI	GRGCYC	4 cut(s)	302, 502, 1175, 1733
Fsp4HI	GCNGC	5 cut(s)	378, 779, 1017, 1521, 1650
FspBI	CTAG	2 cut(s)	584, 996
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	5 cut(s)	378, 779, 1017, 1521, 1650
GsaI	CCCAGC	2 cut(s)	235, 1736
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	5 cut(s)	5, 500, 840, 1549, 1621
HapII	CCGG	5 cut(s)	15, 156, 439, 1067, 1124
HgaI	GACGC	1 cut(s)	1853
HhaI	GCGC	1 cut(s)	116
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	9 cut(s)	82, 573, 1031, 1091, 1466, 1511, 1588, 1771, 1783
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HinfI	GANTC	2 cut(s)	317, 1856
HpaII	CCGG	5 cut(s)	15, 156, 439, 1067, 1124
HphI	GGTGA	5 cut(s)	35, 49, 640, 937, 1262
Hpy166II	GTNNAC	3 cut(s)	888, 958, 1416
Hpy188III	TCNNGA	7 cut(s)	79, 314, 1191, 1337, 1667, 1715, 1717
Hpy8I	GTNNAC	3 cut(s)	888, 958, 1416
HpyAV	CCTTC	8 cut(s)	70, 100, 512, 847, 993, 1241, 1487, 1688
HpyCH4III	ACNGT	3 cut(s)	142, 1288, 1637
HpyCH4IV	ACGT	1 cut(s)	1446
HpyF10VI	GCNNNNNNNGC	4 cut(s)	232, 383, 1037, 1450
HpyF3I	CTNAG	9 cut(s)	22, 332, 469, 636, 705, 909, 1176, 1469, 1676
HpySE526I	ACGT	1 cut(s)	1446
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	9 cut(s)	82, 573, 1031, 1091, 1466, 1511, 1588, 1771, 1783
HspAI	GCGC	1 cut(s)	114
KasI	GGCGCC	1 cut(s)	113
Ksp22I	TGATCA	1 cut(s)	1479
KspI	CCGCGG	1 cut(s)	872
Kzo9I	GATC	7 cut(s)	172, 736, 806, 1069, 1165, 1465, 1479
LguI	GCTCTTC	1 cut(s)	343
LmnI	GCTCC	6 cut(s)	18, 184, 240, 454, 873, 1401
Lsp1109I	GCAGC	4 cut(s)	389, 765, 1532, 1636
MabI	ACCWGGT	1 cut(s)	1273
MaeI	CTAG	2 cut(s)	584, 996
MaeII	ACGT	1 cut(s)	1446
MaeIII	GTNAC	3 cut(s)	142, 1250, 1322
MalI	GATC	7 cut(s)	174, 738, 808, 1071, 1167, 1467, 1481
MboI	GATC	7 cut(s)	172, 736, 806, 1069, 1165, 1465, 1479
MboII	GAAGA	9 cut(s)	3, 261, 330, 341, 603, 631, 639, 657, 1014
MfeI	CAATTG	1 cut(s)	823
MhlI	GDGCHC	6 cut(s)	302, 459, 502, 1175, 1418, 1733
MlsI	TGGCCA	1 cut(s)	840
MluNI	TGGCCA	1 cut(s)	840
Mly113I	GGCGCC	1 cut(s)	114
MlyI	GAGTC	1 cut(s)	311
MmeI	TCCRAC	4 cut(s)	120, 366, 383, 912
Mox20I	TGGCCA	1 cut(s)	840
MscI	TGGCCA	1 cut(s)	840
MseI	TTAA	2 cut(s)	390, 447
MslI	CAYNNNNRTG	3 cut(s)	1506, 1613, 1864
Msp20I	TGGCCA	1 cut(s)	840
MspA1I	CMGCKG	3 cut(s)	778, 871, 1016
MspI	CCGG	5 cut(s)	15, 156, 439, 1067, 1124
MspR9I	CCNGG	8 cut(s)	16, 157, 291, 496, 1037, 1067, 1275, 1425
MunI	CAATTG	1 cut(s)	823
MvaI	CCWGG	5 cut(s)	291, 496, 1037, 1275, 1425
MvnI	CGCG	1 cut(s)	871
MwoI	GCNNNNNNNGC	4 cut(s)	232, 383, 1037, 1450
NarI	GGCGCC	1 cut(s)	114
NciI	CCSGG	3 cut(s)	16, 157, 1067
NcoI	CCATGG	1 cut(s)	1767
NdeII	GATC	7 cut(s)	172, 736, 806, 1069, 1165, 1465, 1479
NlaIII	CATG	9 cut(s)	82, 573, 1031, 1091, 1466, 1511, 1588, 1771, 1783
NlaIV	GGNNCC	2 cut(s)	115, 500
NmeAIII	GCCGAG	1 cut(s)	331
NmuCI	GTSAC	2 cut(s)	1250, 1322
PaeR7I	CTCGAG	1 cut(s)	1715
PagI	TCATGA	1 cut(s)	78
PceI	AGGCCT	2 cut(s)	1549, 1621
PciSI	GCTCTTC	1 cut(s)	343
PfeI	GAWTC	1 cut(s)	1856
PflMI	CCANNNNNTGG	2 cut(s)	365, 1236
PfoI	TCCNGGA	2 cut(s)	14, 1065
PkrI	GCNGC	5 cut(s)	379, 780, 1018, 1522, 1651
PleI	GAGTC	1 cut(s)	311
PluTI	GGCGCC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	311
Ppu21I	YACGTR	1 cut(s)	1447
PpuMI	RGGWCCY	1 cut(s)	587
Psp124BI	GAGCTC	1 cut(s)	1175
Psp5II	RGGWCCY	1 cut(s)	587
Psp6I	CCWGG	5 cut(s)	289, 494, 1035, 1273, 1423
PspFI	CCCAGC	2 cut(s)	231, 1732
PspGI	CCWGG	5 cut(s)	289, 494, 1035, 1273, 1423
PspN4I	GGNNCC	2 cut(s)	115, 500
PspOMI	GGGCCC	1 cut(s)	498
PspPI	GGNCC	4 cut(s)	399, 498, 499, 587
PspPPI	RGGWCCY	1 cut(s)	587
PstI	CTGCAG	1 cut(s)	1522
PstNI	CAGNNNCTG	1 cut(s)	1274
PvuII	CAGCTG	1 cut(s)	778
RsaI	GTAC	6 cut(s)	161, 418, 743, 889, 1605, 1639
RsaNI	GTAC	6 cut(s)	160, 417, 742, 888, 1604, 1638
RseI	CAYNNNNRTG	3 cut(s)	1506, 1613, 1864
SacI	GAGCTC	1 cut(s)	1175
SacII	CCGCGG	1 cut(s)	872
SapI	GCTCTTC	1 cut(s)	343
SaqAI	TTAA	2 cut(s)	390, 447
SatI	GCNGC	5 cut(s)	378, 779, 1017, 1521, 1650
Sau3AI	GATC	7 cut(s)	172, 736, 806, 1069, 1165, 1465, 1479
Sau96I	GGNCC	4 cut(s)	399, 498, 499, 587
ScaI	AGTACT	1 cut(s)	1639
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	8 cut(s)	16, 157, 291, 496, 1037, 1067, 1275, 1425
SduI	GDGCHC	6 cut(s)	302, 459, 502, 1175, 1418, 1733
SexAI	ACCWGGT	1 cut(s)	1273
SfcI	CTRYAG	1 cut(s)	1518
SfoI	GGCGCC	1 cut(s)	115
Sfr274I	CTCGAG	1 cut(s)	1715
Sfr303I	CCGCGG	1 cut(s)	872
SgrBI	CCGCGG	1 cut(s)	872
SinI	GGWCC	2 cut(s)	399, 587
SlaI	CTCGAG	1 cut(s)	1715
SmiMI	CAYNNNNRTG	3 cut(s)	1506, 1613, 1864
SmlI	CTYRAG	2 cut(s)	381, 1715
SmoI	CTYRAG	2 cut(s)	381, 1715
SseBI	AGGCCT	2 cut(s)	1549, 1621
SsiI	CCGC	7 cut(s)	33, 182, 224, 303, 869, 871, 1016
SspDI	GGCGCC	1 cut(s)	113
SspMI	CTAG	2 cut(s)	584, 996
SstI	GAGCTC	1 cut(s)	1175
StuI	AGGCCT	2 cut(s)	1549, 1621
StyD4I	CCNGG	8 cut(s)	14, 155, 289, 494, 1035, 1065, 1273, 1423
StyI	CCWWGG	3 cut(s)	1397, 1767, 1824
TaaI	ACNGT	3 cut(s)	142, 1288, 1637
TaiI	ACGT	1 cut(s)	1449
TaqI	TCGA	2 cut(s)	315, 1716
TatI	WGTACW	2 cut(s)	887, 1637
TauI	GCSGC	1 cut(s)	1019
TfiI	GAWTC	1 cut(s)	1856
Tru1I	TTAA	2 cut(s)	390, 447
Tru9I	TTAA	2 cut(s)	390, 447
TscAI	CASTG	7 cut(s)	657, 724, 797, 1293, 1440, 1482, 1537
TseFI	GTSAC	2 cut(s)	1250, 1322
TseI	GCWGC	4 cut(s)	377, 778, 1520, 1649
Tsp45I	GTSAC	2 cut(s)	1250, 1322
TspDTI	ATGAA	7 cut(s)	67, 501, 999, 1122, 1272, 1601, 1796
TspRI	CASTG	7 cut(s)	657, 724, 797, 1293, 1440, 1482, 1537
Van91I	CCANNNNNTGG	2 cut(s)	365, 1236
VneI	GTGCAC	1 cut(s)	1414
VpaK11BI	GGWCC	2 cut(s)	399, 587
XapI	RAATTY	2 cut(s)	37, 1129
XhoI	CTCGAG	1 cut(s)	1715
XspI	CTAG	2 cut(s)	584, 996
ZrmI	AGTACT	1 cut(s)	1639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.