Rorug03G0051000
WRKY Family

WRKY transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001456
Physical Location & Seq
Forward (+)
4008547 .. 4011262
2716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0051000.1

Sequence Viewer

Length: 930 bp
ATGATGAGCTTCTGTAGAAAAATCACCCCTCACTCTCTTCTCGGCCTCACCGCCACCACCACAACCACCGCAACTCCTTCCACTACCAATGAAAACCTCCACCACTACATTCCTTCTCTGACGGGAGGACTATTAGGGTTAATTACTGCAACCGCCAATGACGTCACGCAGCGTCATCCTCTTGTTTTGGAATCTTCCTCCGTAAAGAAACAGAGCTCGTTGTCATCGCTCTCGTCGTTTTTACCGCCTCCTGCAACCAAGGCTGTAGGAGGCGGTGACATCGGCGGGTTCGGCTTCCTAGACGAAGTCGGTGGCGGCGTGGACGGGTTTGTGTCATGCACCGAGAGTCTAGGGTTTGAGAGCTCGGATGAGATCATGCGAGTGGACGATCAGGTTGAGCAGGATGACGAGAAGGATGAGCTCAGGTTGATGAGGCAGTCTGGGAACAAGAGGACCAAATGGAGGAGGATGAGAGATAAGAGGTCGTCGGTGGATAAGGTCAACAATAAGTTTCCGCCGCCGATCTCTTCCTTGAATAAGAACGGACACCCGAATTTCTATCTCCGGTCGGTGAGGAAAGACGGGAGGTTGGAACTCACCGAGGTGAAGATTCATAGGCCAGAGGTTCTACGCGCTCATCGCGAAGATGGACGGTTGAGGTTGCATCTTATTACCCATGACCAAGAAGAAGACTTAATAGAAGAAGAAATTGAAGAGGAAGGAGTTGATGTTGAAGATATTAATAATGTCGAGGAAGGGAAAGAGAATGTAGAAATAGAAAGTAGTGTGAATGTTGGGGATCAGTGGAAGATGGGGTTGGCTGGAGGAGAAGGGTTTAGGCGGTGTCAGGATGTGGCGGGGAGTAGCCACCATGTGCAGCACCACCACAACACCCACCCGGTGTGGAGCCAGCAGCATTGTGTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04626 map04016 map04626
Pfam Domains
Protein Families
WRKY

Protein Analysis

309

Amino Acids

34.39

Weight (kDa)

5.65

Isoelectric Point (pI)

64.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 170 - 223 6.1e-21 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 165
AccII CGCG 2 cut(s) 633, 642
AclWI GGATC 1 cut(s) 807
AcsI RAATTY 1 cut(s) 553
AcyI GRCGYC 1 cut(s) 162
AdeI CACNNNGTG 2 cut(s) 874, 901
AfiI CCNNNNNNNGG 1 cut(s) 462
AgsI TTSAA 3 cut(s) 535, 713, 734
AjuI GAANNNNNNNTTGG 2 cut(s) 800, 832
AleI CACNNNNGTG 1 cut(s) 602
AluBI AGCT 4 cut(s) 9, 216, 363, 421
AluI AGCT 4 cut(s) 9, 216, 363, 421
Alw21I GWGCWC 3 cut(s) 218, 365, 423
AlwI GGATC 1 cut(s) 807
AoxI GGCC 2 cut(s) 43, 617
ApeKI GCWGC 3 cut(s) 169, 877, 913
ApoI RAATTY 1 cut(s) 553
AseI ATTAAT 1 cut(s) 741
AspLEI GCGC 1 cut(s) 635
AspS9I GGNCC 1 cut(s) 453
AsuC2I CCSGG 1 cut(s) 899
AsuHPI GGTGA 6 cut(s) 16, 40, 287, 583, 589, 616
AvaII GGWCC 1 cut(s) 453
BanII GRGCYC 3 cut(s) 218, 365, 423
BbsI GAAGAC 1 cut(s) 696
Bbv12I GWGCWC 3 cut(s) 218, 365, 423
BbvI GCAGC 3 cut(s) 181, 889, 925
BccI CCATC 2 cut(s) 641, 805
BcnI CCSGG 1 cut(s) 899
BfaI CTAG 2 cut(s) 299, 350
BfmI CTRYAG 2 cut(s) 13, 264
BisI GCNGC 5 cut(s) 170, 316, 518, 878, 914
BlsI GCNGC 5 cut(s) 171, 317, 519, 879, 915
Bme1390I CCNGG 1 cut(s) 899
Bme18I GGWCC 1 cut(s) 453
BmgT120I GGNCC 1 cut(s) 453
BmiI GGNNCC 1 cut(s) 908
BmrFI CCNGG 1 cut(s) 899
BmsI GCATC 1 cut(s) 673
BpiI GAAGAC 1 cut(s) 696
BpmI CTGGAG 1 cut(s) 843
Bpu10I CCTNAGC 1 cut(s) 422
BpuMI CCSGG 1 cut(s) 899
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 258, 600
BsaWI WCCGGW 1 cut(s) 564
BsaXI ACNNNNNCTCC 4 cut(s) 58, 88, 714, 744
Bsc4I CCNNNNNNNGG 1 cut(s) 462
BseDI CCNNGG 2 cut(s) 258, 600
BseGI GGATG 6 cut(s) 175, 373, 409, 421, 474, 856
BseLI CCNNNNNNNGG 1 cut(s) 462
BseMII CTCAG 1 cut(s) 436
BseRI GAGGAG 2 cut(s) 478, 840
BseXI GCAGC 3 cut(s) 181, 889, 925
BsgI GTGCAG 1 cut(s) 896
Bsh1236I CGCG 2 cut(s) 633, 642
Bsh1285I CGRYCG 1 cut(s) 569
BshFI GGCC 2 cut(s) 45, 619
BsiEI CGRYCG 1 cut(s) 569
BsiHKAI GWGCWC 3 cut(s) 218, 365, 423
BsiSI CCGG 2 cut(s) 565, 899
BslI CCNNNNNNNGG 1 cut(s) 462
BsnI GGCC 2 cut(s) 45, 619
Bsp1286I GDGCHC 3 cut(s) 218, 365, 423
Bsp143I GATC 4 cut(s) 372, 388, 522, 799
Bsp68I TCGCGA 1 cut(s) 642
BspANI GGCC 2 cut(s) 45, 619
BspCNI CTCAG 1 cut(s) 435
BspFNI CGCG 2 cut(s) 633, 642
BspLI GGNNCC 1 cut(s) 908
BspPI GGATC 1 cut(s) 807
BssECI CCNNGG 2 cut(s) 258, 600
BssMI GATC 4 cut(s) 372, 388, 522, 799
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 258
Bst4CI ACNGT 1 cut(s) 654
Bst6I CTCTTC 3 cut(s) 42, 532, 708
BstACI GRCGYC 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 911
BstDEI CTNAG 1 cut(s) 422
BstF5I GGATG 6 cut(s) 175, 373, 409, 421, 474, 856
BstFNI CGCG 2 cut(s) 633, 642
BstHHI GCGC 1 cut(s) 635
BstKTI GATC 4 cut(s) 375, 391, 525, 802
BstMBI GATC 4 cut(s) 372, 388, 522, 799
BstMCI CGRYCG 1 cut(s) 569
BstMWI GCNNNNNNNGC 3 cut(s) 260, 291, 639
BstSCI CCNGG 1 cut(s) 897
BstSFI CTRYAG 2 cut(s) 13, 264
BstUI CGCG 2 cut(s) 633, 642
BstV1I GCAGC 3 cut(s) 181, 889, 925
BstV2I GAAGAC 1 cut(s) 696
BsuRI GGCC 2 cut(s) 45, 619
BtgZI GCGATG 2 cut(s) 210, 623
BtsCI GGATG 6 cut(s) 175, 373, 409, 421, 474, 856
BtsIMutI CAGTG 1 cut(s) 809
BtuMI TCGCGA 1 cut(s) 642
Cac8I GCNNGC 1 cut(s) 911
CfoI GCGC 1 cut(s) 635
Cfr13I GGNCC 1 cut(s) 453
CseI GACGC 1 cut(s) 161
CviAII CATG 4 cut(s) 336, 376, 677, 872
DdeI CTNAG 1 cut(s) 422
DpnI GATC 4 cut(s) 374, 390, 524, 801
DpnII GATC 4 cut(s) 372, 388, 522, 799
DraIII CACNNNGTG 2 cut(s) 874, 901
Eam1104I CTCTTC 3 cut(s) 42, 532, 708
EarI CTCTTC 3 cut(s) 42, 532, 708
EciI GGCGGA 1 cut(s) 504
Ecl136II GAGCTC 3 cut(s) 216, 363, 421
Eco130I CCWWGG 1 cut(s) 258
Eco24I GRGCYC 3 cut(s) 218, 365, 423
Eco47I GGWCC 1 cut(s) 453
Eco53kI GAGCTC 3 cut(s) 216, 363, 421
EcoICRI GAGCTC 3 cut(s) 216, 363, 421
EcoT14I CCWWGG 1 cut(s) 258
EcoT38I GRGCYC 3 cut(s) 218, 365, 423
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 4 cut(s) 339, 379, 680, 875
FaiI YATR 5 cut(s) 337, 377, 615, 678, 873
FatI CATG 4 cut(s) 335, 375, 676, 871
FauI CCCGC 2 cut(s) 278, 850
Fnu4HI GCNGC 5 cut(s) 170, 316, 518, 878, 914
FokI GGATG 6 cut(s) 162, 380, 416, 428, 481, 863
FriOI GRGCYC 3 cut(s) 218, 365, 423
Fsp4HI GCNGC 5 cut(s) 170, 316, 518, 878, 914
FspBI CTAG 2 cut(s) 299, 350
GlaI GCGC 1 cut(s) 634
GluI GCNGC 5 cut(s) 170, 316, 518, 878, 914
GsuI CTGGAG 1 cut(s) 843
HaeIII GGCC 2 cut(s) 45, 619
HapII CCGG 2 cut(s) 565, 899
HgaI GACGC 1 cut(s) 161
HhaI GCGC 1 cut(s) 635
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 4 cut(s) 339, 379, 680, 875
Hin6I GCGC 1 cut(s) 633
HinP1I GCGC 1 cut(s) 633
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HinfI GANTC 3 cut(s) 191, 346, 610
HpaII CCGG 2 cut(s) 565, 899
HphI GGTGA 6 cut(s) 16, 40, 287, 583, 589, 616
Hpy166II GTNNAC 3 cut(s) 322, 385, 502
Hpy188I TCNGA 2 cut(s) 120, 367
Hpy188III TCNNGA 2 cut(s) 641, 848
Hpy8I GTNNAC 3 cut(s) 322, 385, 502
Hpy99I CGWCG 2 cut(s) 238, 490
HpyAV CCTTC 6 cut(s) 87, 123, 406, 713, 749, 824
HpyCH4III ACNGT 1 cut(s) 654
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 5 cut(s) 149, 254, 339, 664, 877
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 291, 639
HpyF3I CTNAG 1 cut(s) 422
HpySE526I ACGT 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 4 cut(s) 339, 379, 680, 875
HspAI GCGC 1 cut(s) 633
Kzo9I GATC 4 cut(s) 372, 388, 522, 799
LmnI GCTCC 1 cut(s) 906
Lsp1109I GCAGC 3 cut(s) 181, 889, 925
LweI GCATC 1 cut(s) 673
MaeI CTAG 2 cut(s) 299, 350
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 2 cut(s) 163, 275
MalI GATC 4 cut(s) 374, 390, 524, 801
MboI GATC 4 cut(s) 372, 388, 522, 799
MhlI GDGCHC 3 cut(s) 218, 365, 423
MluCI AATT 3 cut(s) 141, 553, 708
MlyI GAGTC 1 cut(s) 355
MmeI TCCRAC 1 cut(s) 570
MseI TTAA 3 cut(s) 140, 695, 741
MslI CAYNNNNRTG 2 cut(s) 380, 602
MspI CCGG 2 cut(s) 565, 899
MspR9I CCNGG 1 cut(s) 899
MvnI CGCG 2 cut(s) 633, 642
MwoI GCNNNNNNNGC 3 cut(s) 260, 291, 639
NciI CCSGG 1 cut(s) 899
NdeII GATC 4 cut(s) 372, 388, 522, 799
NlaIII CATG 4 cut(s) 339, 379, 680, 875
NlaIV GGNNCC 1 cut(s) 908
NmeAIII GCCGAG 1 cut(s) 21
NmuCI GTSAC 2 cut(s) 163, 275
NruI TCGCGA 1 cut(s) 642
OliI CACNNNNGTG 1 cut(s) 602
PcsI WCGNNNNNNNCGW 2 cut(s) 233, 315
PfeI GAWTC 2 cut(s) 191, 610
PflFI GACNNNGTC 1 cut(s) 305
PkrI GCNGC 5 cut(s) 171, 317, 519, 879, 915
PleI GAGTC 1 cut(s) 354
PpsI GAGTC 1 cut(s) 354
PshBI ATTAAT 1 cut(s) 741
Psp124BI GAGCTC 3 cut(s) 218, 365, 423
PspN4I GGNNCC 1 cut(s) 908
PspPI GGNCC 1 cut(s) 453
PsyI GACNNNGTC 1 cut(s) 305
RruI TCGCGA 1 cut(s) 642
RseI CAYNNNNRTG 2 cut(s) 380, 602
SacI GAGCTC 3 cut(s) 218, 365, 423
SaqAI TTAA 3 cut(s) 140, 695, 741
SatI GCNGC 5 cut(s) 170, 316, 518, 878, 914
Sau3AI GATC 4 cut(s) 372, 388, 522, 799
Sau96I GGNCC 1 cut(s) 453
SchI GAGTC 1 cut(s) 355
ScrFI CCNGG 1 cut(s) 899
SduI GDGCHC 3 cut(s) 218, 365, 423
SfaNI GCATC 1 cut(s) 673
SfcI CTRYAG 2 cut(s) 13, 264
SinI GGWCC 1 cut(s) 453
SmiMI CAYNNNNRTG 2 cut(s) 380, 602
Sse9I AATT 3 cut(s) 141, 553, 708
SspMI CTAG 2 cut(s) 299, 350
SstI GAGCTC 3 cut(s) 218, 365, 423
StyD4I CCNGG 1 cut(s) 897
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 1 cut(s) 654
TaiI ACGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 750
TasI AATT 3 cut(s) 141, 553, 708
TauI GCSGC 2 cut(s) 318, 520
TfiI GAWTC 2 cut(s) 191, 610
Tru1I TTAA 3 cut(s) 140, 695, 741
Tru9I TTAA 3 cut(s) 140, 695, 741
TscAI CASTG 1 cut(s) 809
TseFI GTSAC 2 cut(s) 163, 275
TseI GCWGC 3 cut(s) 169, 877, 913
Tsp45I GTSAC 2 cut(s) 163, 275
TspDTI ATGAA 2 cut(s) 105, 602
TspGWI ACGGA 2 cut(s) 190, 558
TspRI CASTG 1 cut(s) 809
Tth111I GACNNNGTC 1 cut(s) 305
VpaK11BI GGWCC 1 cut(s) 453
VspI ATTAAT 1 cut(s) 741
XapI RAATTY 1 cut(s) 553
XspI CTAG 2 cut(s) 299, 350
ZraI GACGTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.