Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001456

Physical Location & Seq

Genomic Coordinates Reverse (-)

78643704 .. 78647830

Gene Structure 4127 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG502000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1884 bp

ATGGCCACTTCTTCCGGGAGCTTAGACACCTCTGCAAATTCCCACCCGAGCAACTTCACCTTCTCCACCCACCCATTCATGACCACCTCCTTCTCCGACCTCTTATCCTCCGGCGCGGACACTACAAACCCAATAGCCACCGCAACCCGAAACTCCGGGTACGGGTTATCGGATCGTATTGCGGAGCGAACCGGGTCGGGTGTCCCCAAGTTCAAGTCCCTCCCGCCTCCCCAGCTCCCCATTTCGCCTCCCTCTGTTGTGTCTCCCTCTTCCTACTTTGCAATCCCACCTGGGATGAGCCCCGCCGAGCTTCTCGACTCTCCTGTGCTTCTCAGCTCTTCCAACATTCTTCCGTCTCCAACTACTGGGAGTTTTGCAGCTCAAGCCTTTAATAATTGGAGGACCAATTCTGGTTCTGGTACTAACAACAACCGGAGTGTTAAAGAGGAGCACAAGAACTACTCAGATTTCTCTTTCCAAACCCAAACCAGGGCCCCTCCAACTTCATCGTCAGCAATTTTGCAATCCTCAAACAGCTCAGTTCAGACTGCACAAGAGCAGGCATGGAATAACTATCTAGGACTTCCCAAACAAGATAACTTTTCTTCAGGGAAGAGTATGGTGAAACCTGAGTATGGTTCTTCAGTGCAGAGCTTCTCTTCTGAAATGGGGACTAATATGCAGAGCAATAACAATACTCAGCCCAAAAGCAGTGGTGGTTTCCAATCAGATCAGTACAGCAACTACAATAACAATAACAACAACAACAACAACAACAGCAACAACCAGCAGCTGCAATCCCATCAGTGCTTGAACAGGAGATCAGATGATGGGTTCAATTGGAGGAAATATGGCCAGAAACAAGTGAAGGGAAGCGAAAATCCGCGGAGCTATTACAAGTGTACTTATCCGAATTGCCCAACTAAGAAAAAGGTTGAGAGGTCGTTGGATGGACAAATCACCGAGATAGTTTACAAGGGAAATCATAACCATCCCAAGCCACAGAATACTAGAAGGTCGGGTTCATCAGCGGCTTCTTCCCATGCAATTCAGGCTTCCAATCACACCACCAATGACATCCCGGATCAGTCTTTCGGCTCTCATGGTAATTCACAAATGGATAACTCCATTGGAACACCGGAGAATTCATCCAATTTTTCAAATGGGGATGATGAGTTTGATCAGAGCTCTCAGAGAAGCAAGTCAGGAGGAGGGGATGAGTATGATGAGGATGAGCCTAATGCCAAAAGATGGAAAAAAGAAGGTGACAATGAATGTATTTCAGCACCTGGGAGTAGAACAGTGAGAGAACCAAGAGTGGTAGTTCAAACAACAAGTGACATTGATATTCTTGATGATGGGTACAGGTGGAGGAAGTATGGTCAGAAAGTAGTAAAGGGCAACCCAAATCCAAGGAGCTACTACAAGTGCACAAATCCAGGCTGTCCAGTGAGGAAGCACGTAGAGCGAGCTTCACACGATCTTAGAGCAGTGATCACAACCTACGAAGGGAAGCACAACCATGATGTTCCTGCAGCCCGTGGCAGTGGTTCTGCCAACAGGCCTTTACCAAGCCACAATACCAACAACAACAACATGAACAACAACCACAATGTACCCACAGCAATGAGGCCTATGACCCATCACAGTACTAACAATACTGCTAACAACAACCCTCTTGACAATCTAAGGCTACCGACATCAGAAGGGCAAGCACCCTTTACTCTCGAGATGTTGCAGAGCCCAGCAAGTTATGGATTTGCAGGGTTTGATAACCCCATGGGGTCATACATGAACCAAACACAGCTCAATGACAACAACATGTTTTCTAAAACCAAGGACGAGCCAAGAGATGACGCATTTTTCGAATCATTGCTGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009403 GO:0009404 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009700 GO:0009889 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010035 GO:0010120 GO:0010200 GO:0010243 GO:0010286 GO:0010468 GO:0010506 GO:0010508 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0031323 GO:0031325 GO:0031326 GO:0031329 GO:0031331 GO:0033554 GO:0034605 GO:0034641 GO:0042221 GO:0042430 GO:0042435 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044424 GO:0044464 GO:0044550 GO:0046217 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0065007 GO:0070370 GO:0071704 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

627

Amino Acids

68.77

Weight (kDa)

7.67

Isoelectric Point (pI)

52.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	276 - 332	1.6e-26	WRKY DNA -binding domain
WRKY	PF03106	452 - 509	2.3e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07100 AT5G07100 AT5G07100 AT5G07100 AT5G07100
fragaria_vesca	FvH4_3g39850 FvH4_3g39850 FvH4_3g39850 FvH4_3g39850 FvH4_3g39850 FvH4_6g10510 FvH4_6g10510 FvH4_6g10510 FvH4_6g10510 FvH4_6g10510 FvH4_6g10510 FvH4_6g10510 FvH4_6g10510
malus_domestica	MD03G1057400.v1.1 MD04G1167700.v1.1 MD06G1115200.v1.1 MD11G1059400.v1.1 MD12G1181000.v1.1
prunus_persica	Prupe.6G046900_v2.0.a1 Prupe.6G286000_v2.0.a1
pyrus_communis	pycom03g04580 pycom04g14890 pycom06g10790 pycom11g04930 pycom12g17060
rosa_chinensis	RchiOBHm_Chr3g0461481 RchiOBHm_Chr5g0071811
rosa_laevigata	RLG00000024931 RLG00000036250
rosa_multiflora	Rmu_sc0002677.1_g000005 Rmu_ssc0000127.1_g000054
rosa_roxburghii	Rroxscaffold_1G00009350 Rroxscaffold_6G00418250 Rroxscaffold_6G00418580
rosa_rugosa	Rorug03G0051000 Rorug03G0051100.1 Rorug05G0414700
rosa_samantha	Rh3AG108800 Rh3BG112700 Rh3CG114200 Rh3DG114300 Rh5AG471000 Rh5BG490700 Rh5CG514700 Rh5DG502000
rosa_wichuraiana	Rw3G009250 Rw5G043770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	365, 1251
AccII	CGCG	2 cut(s)	116, 886
AciI	CCGC	8 cut(s)	116, 141, 182, 224, 303, 884, 886, 1031
AclWI	GGATC	2 cut(s)	180, 1092
AcoI	YGGCCR	2 cut(s)	3, 853
AcsI	RAATTY	2 cut(s)	37, 1144
AcuI	CTGAAG	2 cut(s)	591, 627
AfaI	GTAC	7 cut(s)	161, 421, 737, 904, 1364, 1617, 1651
AfiI	CCNNNNNNNGG	7 cut(s)	162, 365, 489, 490, 635, 1251, 1509
AflIII	ACRYGT	1 cut(s)	1821
AgsI	TTSAA	5 cut(s)	214, 814, 838, 1161, 1328
AjnI	CCWGG	4 cut(s)	289, 488, 1288, 1438
Alw21I	GWGCWC	3 cut(s)	453, 1190, 1433
Alw26I	GTCTC	2 cut(s)	267, 360
Alw44I	GTGCAC	1 cut(s)	1429
AlwI	GGATC	2 cut(s)	180, 1092
AlwNI	CAGNNNCTG	2 cut(s)	793, 1289
Ama87I	CYCGRG	2 cut(s)	46, 1727
AoxI	GGCC	5 cut(s)	3, 492, 853, 1562, 1631
ApaI	GGGCCC	1 cut(s)	496
ApaLI	GTGCAC	1 cut(s)	1429
ApeKI	GCWGC	4 cut(s)	377, 790, 793, 1535
ApoI	RAATTY	2 cut(s)	37, 1144
ArsI	GACNNNNNNTTYG	2 cut(s)	1847, 1879
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	3 cut(s)	402, 492, 493
AsuC2I	CCSGG	4 cut(s)	16, 157, 193, 1082
AsuHPI	GGTGA	4 cut(s)	49, 634, 952, 1277
AsuII	TTCGAA	1 cut(s)	1866
AvaI	CYCGRG	2 cut(s)	46, 1727
AvaII	GGWCC	1 cut(s)	402
BaeGI	GKGCMC	2 cut(s)	496, 1433
BalI	TGGCCA	2 cut(s)	5, 855
BanII	GRGCYC	4 cut(s)	302, 496, 1190, 1745
Bbv12I	GWGCWC	3 cut(s)	453, 1190, 1433
BbvI	GCAGC	4 cut(s)	389, 780, 802, 1547
BccI	CCATC	7 cut(s)	810, 824, 944, 999, 1245, 1352, 1650
BciT130I	CCWGG	4 cut(s)	291, 490, 1290, 1440
BclI	TGATCA	2 cut(s)	1180, 1494
BcnI	CCSGG	4 cut(s)	16, 157, 193, 1082
BcoDI	GTCTC	2 cut(s)	267, 360
BfaI	CTAG	2 cut(s)	578, 1011
BfmI	CTRYAG	1 cut(s)	1533
BisI	GCNGC	5 cut(s)	378, 791, 794, 1032, 1536
BlsI	GCNGC	5 cut(s)	379, 792, 795, 1033, 1537
BmcAI	AGTACT	1 cut(s)	1651
Bme1390I	CCNGG	8 cut(s)	16, 157, 193, 291, 490, 1082, 1290, 1440
Bme18I	GGWCC	1 cut(s)	402
BmeT110I	CYCGRG	2 cut(s)	46, 1727
BmgT120I	GGNCC	3 cut(s)	402, 492, 493
BmiI	GGNNCC	2 cut(s)	494, 495
BmrFI	CCNGG	8 cut(s)	16, 157, 193, 291, 490, 1082, 1290, 1440
BmrI	ACTGGG	1 cut(s)	375
BmuI	ACTGGG	1 cut(s)	375
Bpu14I	TTCGAA	1 cut(s)	1866
BpuEI	CTTGAG	1 cut(s)	366
BpuMI	CCSGG	4 cut(s)	16, 157, 193, 1082
BsaAI	YACGTR	1 cut(s)	1462
BsaJI	CCNNGG	8 cut(s)	290, 489, 884, 1289, 1412, 1540, 1779, 1836
BsaWI	WCCGGW	2 cut(s)	432, 1138
Bsc4I	CCNNNNNNNGG	7 cut(s)	162, 365, 489, 490, 635, 1251, 1509
Bse1I	ACTGG	2 cut(s)	370, 1448
Bse3DI	GCAATG	2 cut(s)	1632, 1871
BseBI	CCWGG	4 cut(s)	291, 490, 1290, 1440
BseDI	CCNNGG	8 cut(s)	290, 489, 884, 1289, 1412, 1540, 1779, 1836
BseGI	GGATG	8 cut(s)	300, 955, 991, 1077, 1148, 1174, 1222, 1237
BseLI	CCNNNNNNNGG	7 cut(s)	162, 365, 489, 490, 635, 1251, 1509
BseMI	GCAATG	2 cut(s)	1632, 1871
BseMII	CTCAG	6 cut(s)	346, 477, 552, 621, 713, 1205
BseNI	ACTGG	2 cut(s)	370, 1448
BseRI	GAGGAG	2 cut(s)	461, 1224
BseSI	GKGCMC	2 cut(s)	496, 1433
BseXI	GCAGC	4 cut(s)	389, 780, 802, 1547
BseYI	CCCAGC	2 cut(s)	231, 1744
BsgI	GTGCAG	2 cut(s)	534, 668
Bsh1236I	CGCG	2 cut(s)	116, 886
BshFI	GGCC	5 cut(s)	5, 494, 855, 1564, 1633
BsiHKAI	GWGCWC	3 cut(s)	453, 1190, 1433
BsiHKCI	CYCGRG	2 cut(s)	46, 1727
BsiSI	CCGG	7 cut(s)	15, 111, 156, 192, 433, 1082, 1139
BslFI	GGGAC	3 cut(s)	188, 202, 685
BslI	CCNNNNNNNGG	7 cut(s)	162, 365, 489, 490, 635, 1251, 1509
BsmAI	GTCTC	2 cut(s)	267, 360
BsmBI	CGTCTC	1 cut(s)	360
BsmFI	GGGAC	3 cut(s)	188, 202, 685
BsnI	GGCC	5 cut(s)	5, 494, 855, 1564, 1633
BsoBI	CYCGRG	2 cut(s)	46, 1727
Bsp119I	TTCGAA	1 cut(s)	1866
Bsp120I	GGGCCC	1 cut(s)	492
Bsp1286I	GDGCHC	6 cut(s)	302, 453, 496, 1190, 1433, 1745
Bsp143I	GATC	7 cut(s)	172, 730, 821, 1084, 1180, 1480, 1494
Bsp19I	CCATGG	1 cut(s)	1779
BspACI	CCGC	8 cut(s)	116, 141, 182, 224, 303, 884, 886, 1031
BspANI	GGCC	5 cut(s)	5, 494, 855, 1564, 1633
BspCNI	CTCAG	6 cut(s)	345, 476, 551, 622, 712, 1204
BspFNI	CGCG	2 cut(s)	116, 886
BspHI	TCATGA	1 cut(s)	78
BspLI	GGNNCC	2 cut(s)	494, 495
BspMAI	CTGCAG	1 cut(s)	1537
BspPI	GGATC	2 cut(s)	180, 1092
BspQI	GCTCTTC	1 cut(s)	343
BspT104I	TTCGAA	1 cut(s)	1866
BsrDI	GCAATG	2 cut(s)	1632, 1871
BsrI	ACTGG	2 cut(s)	370, 1448
BssECI	CCNNGG	8 cut(s)	290, 489, 884, 1289, 1412, 1540, 1779, 1836
BssMI	GATC	7 cut(s)	172, 730, 821, 1084, 1180, 1480, 1494
BssT1I	CCWWGG	3 cut(s)	1412, 1779, 1836
Bst2UI	CCWGG	4 cut(s)	291, 490, 1290, 1440
Bst4CI	ACNGT	2 cut(s)	1303, 1649
Bst6I	CTCTTC	4 cut(s)	274, 343, 608, 664
BstBAI	YACGTR	1 cut(s)	1462
BstBI	TTCGAA	1 cut(s)	1866
BstC8I	GCNNGC	3 cut(s)	561, 1470, 1713
BstDSI	CCRYGG	3 cut(s)	884, 1540, 1779
BstF5I	GGATG	8 cut(s)	300, 955, 991, 1077, 1148, 1174, 1222, 1237
BstFNI	CGCG	2 cut(s)	116, 886
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	7 cut(s)	175, 733, 824, 1087, 1183, 1483, 1497
BstMAI	GTCTC	2 cut(s)	267, 360
BstMBI	GATC	7 cut(s)	172, 730, 821, 1084, 1180, 1480, 1494
BstMWI	GCNNNNNNNGC	4 cut(s)	232, 383, 1052, 1465
BstNI	CCWGG	4 cut(s)	291, 490, 1290, 1440
BstNSI	RCATGY	1 cut(s)	1825
BstSCI	CCNGG	8 cut(s)	14, 155, 191, 289, 488, 1080, 1288, 1438
BstSFI	CTRYAG	1 cut(s)	1533
BstSLI	GKGCMC	2 cut(s)	496, 1433
BstUI	CGCG	2 cut(s)	116, 886
BstV1I	GCAGC	4 cut(s)	389, 780, 802, 1547
BsuRI	GGCC	5 cut(s)	5, 494, 855, 1564, 1633
BtgI	CCRYGG	3 cut(s)	884, 1540, 1779
BtsCI	GGATG	8 cut(s)	300, 955, 991, 1077, 1148, 1174, 1222, 1237
BtsI	GCAGTG	3 cut(s)	718, 1497, 1552
BtsIMutI	CAGTG	7 cut(s)	651, 718, 812, 1308, 1455, 1497, 1552
Cac8I	GCNNGC	3 cut(s)	561, 1470, 1713
CaiI	CAGNNNCTG	2 cut(s)	793, 1289
CciI	TCATGA	1 cut(s)	78
CfoI	GCGC	1 cut(s)	116
Cfr13I	GGNCC	3 cut(s)	402, 492, 493
Cfr42I	CCGCGG	1 cut(s)	887
CseI	GACGC	1 cut(s)	1865
Csp6I	GTAC	7 cut(s)	160, 420, 736, 903, 1363, 1616, 1650
CspCI	CAANNNNNGTGG	2 cut(s)	694, 729
CviAII	CATG	9 cut(s)	79, 564, 1043, 1103, 1523, 1597, 1780, 1792, 1822
CviQI	GTAC	7 cut(s)	160, 420, 736, 903, 1363, 1616, 1650
DpnI	GATC	7 cut(s)	174, 732, 823, 1086, 1182, 1482, 1496
DpnII	GATC	7 cut(s)	172, 730, 821, 1084, 1180, 1480, 1494
EaeI	YGGCCR	2 cut(s)	3, 853
Eam1104I	CTCTTC	4 cut(s)	274, 343, 608, 664
EarI	CTCTTC	4 cut(s)	274, 343, 608, 664
Ecl136II	GAGCTC	1 cut(s)	1188
Eco130I	CCWWGG	3 cut(s)	1412, 1779, 1836
Eco147I	AGGCCT	2 cut(s)	1564, 1633
Eco24I	GRGCYC	4 cut(s)	302, 496, 1190, 1745
Eco47I	GGWCC	1 cut(s)	402
Eco53kI	GAGCTC	1 cut(s)	1188
Eco57I	CTGAAG	2 cut(s)	591, 627
Eco88I	CYCGRG	2 cut(s)	46, 1727
EcoICRI	GAGCTC	1 cut(s)	1188
EcoO109I	RGGNCCY	2 cut(s)	492, 493
EcoRI	GAATTC	1 cut(s)	1144
EcoRII	CCWGG	4 cut(s)	289, 488, 1288, 1438
EcoT14I	CCWWGG	3 cut(s)	1412, 1779, 1836
EcoT38I	GRGCYC	4 cut(s)	302, 496, 1190, 1745
ErhI	CCWWGG	3 cut(s)	1412, 1779, 1836
Esp3I	CGTCTC	1 cut(s)	360
FaeI	CATG	9 cut(s)	82, 567, 1046, 1106, 1526, 1600, 1783, 1795, 1825
FaqI	GGGAC	3 cut(s)	188, 202, 685
FatI	CATG	9 cut(s)	78, 563, 1042, 1102, 1522, 1596, 1779, 1791, 1821
FauI	CCCGC	2 cut(s)	231, 310
FbaI	TGATCA	2 cut(s)	1180, 1494
Fnu4HI	GCNGC	5 cut(s)	378, 791, 794, 1032, 1536
FokI	GGATG	8 cut(s)	307, 962, 978, 1064, 1135, 1181, 1229, 1244
FriOI	GRGCYC	4 cut(s)	302, 496, 1190, 1745
Fsp4HI	GCNGC	5 cut(s)	378, 791, 794, 1032, 1536
FspBI	CTAG	2 cut(s)	578, 1011
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	5 cut(s)	378, 791, 794, 1032, 1536
GsaI	CCCAGC	2 cut(s)	235, 1748
HaeIII	GGCC	5 cut(s)	5, 494, 855, 1564, 1633
HapII	CCGG	7 cut(s)	15, 111, 156, 192, 433, 1082, 1139
HgaI	GACGC	1 cut(s)	1865
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	9 cut(s)	82, 567, 1046, 1106, 1526, 1600, 1783, 1795, 1825
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HinfI	GANTC	2 cut(s)	317, 1868
HpaII	CCGG	7 cut(s)	15, 111, 156, 192, 433, 1082, 1139
HphI	GGTGA	4 cut(s)	49, 634, 952, 1277
Hpy166II	GTNNAC	3 cut(s)	903, 973, 1431
Hpy188III	TCNNGA	7 cut(s)	79, 314, 1206, 1352, 1679, 1727, 1729
Hpy8I	GTNNAC	3 cut(s)	903, 973, 1431
HpyAV	CCTTC	7 cut(s)	70, 100, 862, 1008, 1256, 1502, 1700
HpyCH4III	ACNGT	2 cut(s)	1303, 1649
HpyCH4IV	ACGT	1 cut(s)	1461
HpyF10VI	GCNNNNNNNGC	4 cut(s)	232, 383, 1052, 1465
HpySE526I	ACGT	1 cut(s)	1461
Hsp92II	CATG	9 cut(s)	82, 567, 1046, 1106, 1526, 1600, 1783, 1795, 1825
HspAI	GCGC	1 cut(s)	114
Ksp22I	TGATCA	2 cut(s)	1180, 1494
KspI	CCGCGG	1 cut(s)	887
Kzo9I	GATC	7 cut(s)	172, 730, 821, 1084, 1180, 1480, 1494
LguI	GCTCTTC	1 cut(s)	343
LmnI	GCTCC	6 cut(s)	18, 184, 240, 448, 888, 1416
Lsp1109I	GCAGC	4 cut(s)	389, 780, 802, 1547
MaeI	CTAG	2 cut(s)	578, 1011
MaeII	ACGT	1 cut(s)	1461
MaeIII	GTNAC	2 cut(s)	1265, 1337
MalI	GATC	7 cut(s)	174, 732, 823, 1086, 1182, 1482, 1496
MboI	GATC	7 cut(s)	172, 730, 821, 1084, 1180, 1480, 1494
MboII	GAAGA	9 cut(s)	3, 261, 330, 341, 597, 625, 633, 651, 1029
MfeI	CAATTG	1 cut(s)	838
MhlI	GDGCHC	6 cut(s)	302, 453, 496, 1190, 1433, 1745
MlsI	TGGCCA	2 cut(s)	5, 855
MluNI	TGGCCA	2 cut(s)	5, 855
MlyI	GAGTC	1 cut(s)	311
MmeI	TCCRAC	5 cut(s)	120, 366, 383, 524, 927
Mox20I	TGGCCA	2 cut(s)	5, 855
MscI	TGGCCA	2 cut(s)	5, 855
MseI	TTAA	2 cut(s)	390, 441
MslI	CAYNNNNRTG	3 cut(s)	1521, 1625, 1876
Msp20I	TGGCCA	2 cut(s)	5, 855
MspA1I	CMGCKG	3 cut(s)	793, 886, 1031
MspI	CCGG	7 cut(s)	15, 111, 156, 192, 433, 1082, 1139
MspR9I	CCNGG	8 cut(s)	16, 157, 193, 291, 490, 1082, 1290, 1440
MunI	CAATTG	1 cut(s)	838
MvaI	CCWGG	4 cut(s)	291, 490, 1290, 1440
MvnI	CGCG	2 cut(s)	116, 886
MwoI	GCNNNNNNNGC	4 cut(s)	232, 383, 1052, 1465
NciI	CCSGG	4 cut(s)	16, 157, 193, 1082
NcoI	CCATGG	1 cut(s)	1779
NdeII	GATC	7 cut(s)	172, 730, 821, 1084, 1180, 1480, 1494
NlaIII	CATG	9 cut(s)	82, 567, 1046, 1106, 1526, 1600, 1783, 1795, 1825
NlaIV	GGNNCC	2 cut(s)	494, 495
NmeAIII	GCCGAG	1 cut(s)	331
NmuCI	GTSAC	2 cut(s)	1265, 1337
NspI	RCATGY	1 cut(s)	1825
NspV	TTCGAA	1 cut(s)	1866
PaeR7I	CTCGAG	1 cut(s)	1727
PagI	TCATGA	1 cut(s)	78
PceI	AGGCCT	2 cut(s)	1564, 1633
PciI	ACATGT	1 cut(s)	1821
PciSI	GCTCTTC	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	1 cut(s)	1863
PfeI	GAWTC	1 cut(s)	1868
PflMI	CCANNNNNTGG	2 cut(s)	365, 1251
PfoI	TCCNGGA	2 cut(s)	14, 1080
PkrI	GCNGC	5 cut(s)	379, 792, 795, 1033, 1537
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
Ppu21I	YACGTR	1 cut(s)	1462
PscI	ACATGT	1 cut(s)	1821
Psp124BI	GAGCTC	1 cut(s)	1190
Psp6I	CCWGG	4 cut(s)	289, 488, 1288, 1438
PspFI	CCCAGC	2 cut(s)	231, 1744
PspGI	CCWGG	4 cut(s)	289, 488, 1288, 1438
PspN4I	GGNNCC	2 cut(s)	494, 495
PspOMI	GGGCCC	1 cut(s)	492
PspPI	GGNCC	3 cut(s)	402, 492, 493
PstI	CTGCAG	1 cut(s)	1537
PstNI	CAGNNNCTG	2 cut(s)	793, 1289
PvuII	CAGCTG	1 cut(s)	793
RsaI	GTAC	7 cut(s)	161, 421, 737, 904, 1364, 1617, 1651
RsaNI	GTAC	7 cut(s)	160, 420, 736, 903, 1363, 1616, 1650
RseI	CAYNNNNRTG	3 cut(s)	1521, 1625, 1876
SacI	GAGCTC	1 cut(s)	1190
SacII	CCGCGG	1 cut(s)	887
SapI	GCTCTTC	1 cut(s)	343
SaqAI	TTAA	2 cut(s)	390, 441
SatI	GCNGC	5 cut(s)	378, 791, 794, 1032, 1536
Sau3AI	GATC	7 cut(s)	172, 730, 821, 1084, 1180, 1480, 1494
Sau96I	GGNCC	3 cut(s)	402, 492, 493
ScaI	AGTACT	1 cut(s)	1651
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	8 cut(s)	16, 157, 193, 291, 490, 1082, 1290, 1440
SduI	GDGCHC	6 cut(s)	302, 453, 496, 1190, 1433, 1745
SfcI	CTRYAG	1 cut(s)	1533
Sfr274I	CTCGAG	1 cut(s)	1727
Sfr303I	CCGCGG	1 cut(s)	887
SfuI	TTCGAA	1 cut(s)	1866
SgrBI	CCGCGG	1 cut(s)	887
SinI	GGWCC	1 cut(s)	402
SlaI	CTCGAG	1 cut(s)	1727
SmiMI	CAYNNNNRTG	3 cut(s)	1521, 1625, 1876
SmlI	CTYRAG	2 cut(s)	381, 1727
SmoI	CTYRAG	2 cut(s)	381, 1727
SseBI	AGGCCT	2 cut(s)	1564, 1633
SsiI	CCGC	8 cut(s)	116, 141, 182, 224, 303, 884, 886, 1031
SspMI	CTAG	2 cut(s)	578, 1011
SstI	GAGCTC	1 cut(s)	1190
StuI	AGGCCT	2 cut(s)	1564, 1633
StyD4I	CCNGG	8 cut(s)	14, 155, 191, 289, 488, 1080, 1288, 1438
StyI	CCWWGG	3 cut(s)	1412, 1779, 1836
TaaI	ACNGT	2 cut(s)	1303, 1649
TaiI	ACGT	1 cut(s)	1464
TaqI	TCGA	3 cut(s)	315, 1728, 1866
TatI	WGTACW	3 cut(s)	735, 902, 1649
TauI	GCSGC	1 cut(s)	1034
TfiI	GAWTC	1 cut(s)	1868
Tru1I	TTAA	2 cut(s)	390, 441
Tru9I	TTAA	2 cut(s)	390, 441
TscAI	CASTG	7 cut(s)	651, 718, 812, 1308, 1455, 1497, 1552
TseFI	GTSAC	2 cut(s)	1265, 1337
TseI	GCWGC	4 cut(s)	377, 790, 793, 1535
Tsp45I	GTSAC	2 cut(s)	1265, 1337
TspDTI	ATGAA	7 cut(s)	67, 495, 1014, 1137, 1287, 1613, 1808
TspGWI	ACGGA	1 cut(s)	342
TspRI	CASTG	7 cut(s)	651, 718, 812, 1308, 1455, 1497, 1552
Van91I	CCANNNNNTGG	2 cut(s)	365, 1251
VneI	GTGCAC	1 cut(s)	1429
VpaK11BI	GGWCC	1 cut(s)	402
XapI	RAATTY	2 cut(s)	37, 1144
XceI	RCATGY	1 cut(s)	1825
XhoI	CTCGAG	1 cut(s)	1727
XspI	CTAG	2 cut(s)	578, 1011
ZrmI	AGTACT	1 cut(s)	1651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.