pycom06g10790
WRKY Family

WRKY Transcription Factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0001456
Physical Location & Seq
Forward (+)
16048955 .. 16049360
406 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g10790.1

Sequence Viewer

Length: 360 bp
ATGCGCGTATACAGGTCCGTGATCACCACATATAAAGGGAAACACAACCACGATGTTCCTGCAGCACGCTATAGTGACATTTATAGTGCTCCAAAAGAAGGTGCTTCCGAACACCAATCTCAATCTTTACTAGACGGATTAGATGTATTAGACGTGCATGCAACAGAGGATGCCATAAAAAAGACACCGGTTGAATCAGAGCAAGAGTTGCTAAATGAAGGGAATGTTGTGGTACAAGATCAGATTGCAATTAAAGGTTATTGTGAAGGGATTGAACCTCCGTTGTTTGCAGTTGGATTGGATGGACAGGGACCAATGGATGTGAAGGAGATGTCTGATTCAACAGTACGGAGACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.12

Weight (kDa)

4.97

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 9
AccII CGCG 1 cut(s) 6
AfaI GTAC 2 cut(s) 234, 348
AfiI CCNNNNNNNGG 1 cut(s) 98
AgeI ACCGGT 1 cut(s) 187
AgsI TTSAA 3 cut(s) 194, 275, 342
AjiI CACGTC 1 cut(s) 154
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 346
ApeKI GCWGC 1 cut(s) 62
AsiGI ACCGGT 1 cut(s) 187
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 2 cut(s) 15, 311
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 2 cut(s) 15, 311
Bbv12I GWGCWC 1 cut(s) 91
BbvI GCAGC 1 cut(s) 74
BccI CCATC 1 cut(s) 296
BcgI CGANNNNNNTGC 2 cut(s) 41, 75
BclI TGATCA 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 346
BfaI CTAG 1 cut(s) 131
BfmI CTRYAG 2 cut(s) 60, 70
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme18I GGWCC 2 cut(s) 15, 311
BmgBI CACGTC 1 cut(s) 154
BmgT120I GGNCC 2 cut(s) 15, 311
BmiI GGNNCC 1 cut(s) 312
BmsI GCATC 1 cut(s) 160
BsaWI WCCGGW 1 cut(s) 187
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse118I RCCGGY 1 cut(s) 187
BseGI GGATG 3 cut(s) 175, 307, 325
BseLI CCNNNNNNNGG 1 cut(s) 98
BseXI GCAGC 1 cut(s) 74
Bsh1236I CGCG 1 cut(s) 6
BshTI ACCGGT 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 188
BslFI GGGAC 1 cut(s) 324
BslI CCNNNNNNNGG 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 346
BsmFI GGGAC 1 cut(s) 324
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 2 cut(s) 21, 238
BspFNI CGCG 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 312
BspMAI CTGCAG 1 cut(s) 64
BsrFI RCCGGY 1 cut(s) 187
BssAI RCCGGY 1 cut(s) 187
BssMI GATC 2 cut(s) 21, 238
BssNAI GTATAC 1 cut(s) 10
Bst1107I GTATAC 1 cut(s) 10
Bst4CI ACNGT 1 cut(s) 346
BstAPI GCANNNNNTGC 1 cut(s) 208
BstC8I GCNNGC 2 cut(s) 67, 159
BstF5I GGATG 3 cut(s) 175, 307, 325
BstFNI CGCG 1 cut(s) 6
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 2 cut(s) 24, 241
BstMAI GTCTC 1 cut(s) 346
BstMBI GATC 2 cut(s) 21, 238
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstNSI RCATGY 1 cut(s) 161
BstSFI CTRYAG 2 cut(s) 60, 70
BstUI CGCG 1 cut(s) 6
BstV1I GCAGC 1 cut(s) 74
BstZ17I GTATAC 1 cut(s) 10
BtrI CACGTC 1 cut(s) 154
BtsCI GGATG 3 cut(s) 175, 307, 325
BtsIMutI CAGTG 1 cut(s) 355
Cac8I GCNNGC 2 cut(s) 67, 159
CfoI GCGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 187
Cfr13I GGNCC 2 cut(s) 15, 311
Csp6I GTAC 2 cut(s) 233, 347
CspAI ACCGGT 1 cut(s) 187
CviAII CATG 1 cut(s) 158
CviQI GTAC 2 cut(s) 233, 347
DpnI GATC 2 cut(s) 23, 240
DpnII GATC 2 cut(s) 21, 238
Eco47I GGWCC 2 cut(s) 15, 311
FaeI CATG 1 cut(s) 161
FaiI YATR 7 cut(s) 10, 31, 33, 72, 84, 159, 176
FaqI GGGAC 1 cut(s) 324
FatI CATG 1 cut(s) 157
FbaI TGATCA 1 cut(s) 21
FblI GTMKAC 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 3 cut(s) 182, 314, 332
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 1 cut(s) 131
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 63
HapII CCGG 1 cut(s) 188
HhaI GCGC 1 cut(s) 6
Hin1II CATG 1 cut(s) 161
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 2 cut(s) 194, 338
HpaII CCGG 1 cut(s) 188
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 4 cut(s) 109, 199, 243, 337
Hpy8I GTNNAC 1 cut(s) 10
HpyAV CCTTC 4 cut(s) 92, 212, 260, 319
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 5 cut(s) 62, 157, 161, 248, 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 1 cut(s) 161
HspAI GCGC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 2 cut(s) 21, 238
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 3 cut(s) 72, 201, 293
Lsp1109I GCAGC 1 cut(s) 74
LweI GCATC 1 cut(s) 160
MaeI CTAG 1 cut(s) 131
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 74
MalI GATC 2 cut(s) 23, 240
MboI GATC 2 cut(s) 21, 238
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 1 cut(s) 249
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 2 cut(s) 160, 288
MseI TTAA 1 cut(s) 252
MspI CCGG 1 cut(s) 188
MvnI CGCG 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 208
NdeII GATC 2 cut(s) 21, 238
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 1 cut(s) 312
NmuCI GTSAC 1 cut(s) 74
NspI RCATGY 1 cut(s) 161
PaeI GCATGC 1 cut(s) 161
PfeI GAWTC 2 cut(s) 194, 338
PinAI ACCGGT 1 cut(s) 187
PkrI GCNGC 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 312
PspPI GGNCC 2 cut(s) 15, 311
PstI CTGCAG 1 cut(s) 64
RsaI GTAC 2 cut(s) 234, 348
RsaNI GTAC 2 cut(s) 233, 347
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 2 cut(s) 21, 238
Sau96I GGNCC 2 cut(s) 15, 311
SduI GDGCHC 1 cut(s) 91
SetI ASST 5 cut(s) 17, 103, 156, 259, 280
SfaNI GCATC 1 cut(s) 160
SfcI CTRYAG 2 cut(s) 60, 70
SinI GGWCC 2 cut(s) 15, 311
SphI GCATGC 1 cut(s) 161
Sse9I AATT 1 cut(s) 249
SspMI CTAG 1 cut(s) 131
TaaI ACNGT 1 cut(s) 346
TaiI ACGT 1 cut(s) 156
TasI AATT 1 cut(s) 249
TfiI GAWTC 2 cut(s) 194, 338
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 231
TspGWI ACGGA 3 cut(s) 7, 150, 270
VpaK11BI GGWCC 2 cut(s) 15, 311
XceI RCATGY 1 cut(s) 161
XmiI GTMKAC 1 cut(s) 9
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.