Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003892

Physical Location & Seq

Genomic Coordinates Forward (+)

4318460 .. 4319924

Gene Structure 1465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G13470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTCACTGGTCGACTACGACGATTCTTCATCCGACGACGATGTTTTAGCCGCCGAGGAGAAACCTCTCCCACAGACGCAAAAGCGTCTGGTTTCTCCAGCTCAATCTTTTCCTCCAAAGAGGCAGAGATTTGAGCAGGACGAGAGTGTTGAGAAGCTACCAGATGCTCTGCTTCTTCTGGAGTCACCGACACTCGCTCAGGTGACTGGCGGAGACCATGCTTCCGTTGTTGCAGCTGCAATGGCTGAGAGTGCATTAAGGAAGAGAGACTTGAGTGGGAATGCTTCTTCTCTTCCTCGTCGTCCCAAGCTACCAAGAGGAAATTTGCCTCATTCAAAGAATTATCCTGAAACTTTGGGTAATGTGCTTGTGCCTCCTCAGCTCAAGGGAAGGAGCAATGTTGCTACAGAGGATATGAGCAGGCTTTTTGTGAAAAAACGGCAAGACTCCACCAAGGCAAAATCTCCAGATCAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

159

Amino Acids

17.43

Weight (kDa)

6.76

Isoelectric Point (pI)

75.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13470
fragaria_vesca	FvH4_7g01990 FvH4_7g02000 FvH4_7g02110
malus_domestica	MD02G1298000.v1.1 MD07G1026200.v1.1
prunus_persica	Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1
pyrus_communis	pycom02g25090
rosa_chinensis	RchiOBHm_Chr1g0318991
rosa_laevigata	RLG00000030489 RLG00000030510 RLG00000030511
rosa_multiflora	Rmu_sc0003503.1_g000002 Rmu_sc0005870.1_g000006 Rmu_sc0006626.1_g000002 Rmu_sc0006626.1_g000003
rosa_roxburghii	Rroxscaffold_4G00328700
rosa_rugosa	Rorug01G0026300 Rorug01G0027300
rosa_samantha	Rh1AG038100 Rh1AG038200 Rh1AG039600 Rh1AG263000 Rh1BG034400 Rh1BG034500 Rh1BG036400 Rh1CG037100 Rh1DG032900 Rh1DG033000
rosa_wichuraiana	Rw1G002940 Rw1G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	12
AciI	CCGC	2 cut(s)	51, 210
AcsI	RAATTY	1 cut(s)	322
AgsI	TTSAA	1 cut(s)	336
AluBI	AGCT	5 cut(s)	101, 157, 236, 310, 382
AluI	AGCT	5 cut(s)	101, 157, 236, 310, 382
Alw26I	GTCTC	2 cut(s)	207, 261
ApeKI	GCWGC	2 cut(s)	233, 236
ApoI	RAATTY	1 cut(s)	322
AsuHPI	GGTGA	2 cut(s)	177, 214
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	2 cut(s)	223, 245
BceAI	ACGGC	1 cut(s)	455
BcoDI	GTCTC	2 cut(s)	207, 261
BfmI	CTRYAG	1 cut(s)	405
BisI	GCNGC	3 cut(s)	51, 234, 237
BlsI	GCNGC	3 cut(s)	52, 235, 238
BmsI	GCATC	1 cut(s)	154
BpmI	CTGGAG	3 cut(s)	81, 200, 450
Bpu10I	CCTNAGC	2 cut(s)	198, 378
BpuEI	CTTGAG	2 cut(s)	292, 368
BsaI	GGTCTC	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	54, 453
Bse1I	ACTGG	2 cut(s)	12, 211
Bse3DI	GCAATG	2 cut(s)	246, 403
BseDI	CCNNGG	2 cut(s)	54, 453
BseGI	GGATG	1 cut(s)	29
BseMI	GCAATG	2 cut(s)	246, 403
BseMII	CTCAG	3 cut(s)	212, 237, 392
BseNI	ACTGG	2 cut(s)	12, 211
BseRI	GAGGAG	2 cut(s)	71, 366
BseXI	GCAGC	2 cut(s)	223, 245
BslFI	GGGAC	1 cut(s)	288
BsmAI	GTCTC	2 cut(s)	207, 261
BsmFI	GGGAC	1 cut(s)	288
BsmI	GAATGC	1 cut(s)	286
Bso31I	GGTCTC	1 cut(s)	207
Bsp143I	GATC	1 cut(s)	469
BspACI	CCGC	2 cut(s)	51, 210
BspCNI	CTCAG	3 cut(s)	211, 238, 391
BspTNI	GGTCTC	1 cut(s)	207
BsrDI	GCAATG	2 cut(s)	246, 403
BsrI	ACTGG	2 cut(s)	12, 211
BssECI	CCNNGG	2 cut(s)	54, 453
BssMI	GATC	1 cut(s)	469
BssT1I	CCWWGG	1 cut(s)	453
Bst6I	CTCTTC	2 cut(s)	257, 297
BstC8I	GCNNGC	1 cut(s)	422
BstDEI	CTNAG	3 cut(s)	198, 246, 378
BstF5I	GGATG	1 cut(s)	29
BstKTI	GATC	1 cut(s)	472
BstMAI	GTCTC	2 cut(s)	207, 261
BstMBI	GATC	1 cut(s)	469
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 251, 379
BstSFI	CTRYAG	1 cut(s)	405
BstV1I	GCAGC	2 cut(s)	223, 245
BtsCI	GGATG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	422
CseI	GACGC	2 cut(s)	74, 85
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	8 cut(s)	50, 101, 157, 236, 245, 310, 382, 424
CviKI_1	RGCY	8 cut(s)	50, 101, 157, 236, 245, 310, 382, 424
DdeI	CTNAG	3 cut(s)	198, 246, 378
DpnI	GATC	1 cut(s)	471
DpnII	GATC	1 cut(s)	469
Eam1104I	CTCTTC	2 cut(s)	257, 297
EarI	CTCTTC	2 cut(s)	257, 297
EciI	GGCGGA	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	453
Eco31I	GGTCTC	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	1 cut(s)	221
FaiI	YATR	2 cut(s)	219, 416
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	1 cut(s)	217
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	3 cut(s)	51, 234, 237
FokI	GGATG	1 cut(s)	16
Fsp4HI	GCNGC	3 cut(s)	51, 234, 237
GluI	GCNGC	3 cut(s)	51, 234, 237
GsuI	CTGGAG	3 cut(s)	81, 200, 450
HgaI	GACGC	2 cut(s)	74, 85
Hin1II	CATG	1 cut(s)	221
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	3 cut(s)	23, 182, 446
HphI	GGTGA	2 cut(s)	177, 214
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	4 cut(s)	179, 347, 467, 473
Hpy8I	GTNNAC	1 cut(s)	13
Hpy99I	CGWCG	4 cut(s)	23, 38, 41, 303
HpyAV	CCTTC	1 cut(s)	384
HpyCH4V	TGCA	3 cut(s)	233, 239, 254
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 251, 379
HpyF3I	CTNAG	3 cut(s)	198, 246, 378
Hsp92II	CATG	1 cut(s)	221
Kzo9I	GATC	1 cut(s)	469
LmnI	GCTCC	1 cut(s)	393
Lsp1109I	GCAGC	2 cut(s)	223, 245
LweI	GCATC	1 cut(s)	154
MaeIII	GTNAC	3 cut(s)	3, 183, 202
MalI	GATC	1 cut(s)	471
MboI	GATC	1 cut(s)	469
MboII	GAAGA	5 cut(s)	18, 167, 274, 279, 284
MluCI	AATT	2 cut(s)	322, 340
MlyI	GAGTC	2 cut(s)	191, 440
MmeI	TCCRAC	1 cut(s)	57
MseI	TTAA	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	236
Mva1269I	GAATGC	1 cut(s)	286
MwoI	GCNNNNNNNGC	3 cut(s)	242, 251, 379
NdeII	GATC	1 cut(s)	469
NlaIII	CATG	1 cut(s)	221
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	3 cut(s)	3, 183, 202
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PctI	GAATGC	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	3 cut(s)	52, 235, 238
PleI	GAGTC	2 cut(s)	190, 440
PpsI	GAGTC	2 cut(s)	190, 440
PvuII	CAGCTG	1 cut(s)	236
SalI	GTCGAC	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	3 cut(s)	51, 234, 237
Sau3AI	GATC	1 cut(s)	469
SchI	GAGTC	2 cut(s)	191, 440
SetI	ASST	7 cut(s)	67, 103, 159, 204, 238, 312, 384
SfaNI	GCATC	1 cut(s)	154
SfcI	CTRYAG	1 cut(s)	405
SmlI	CTYRAG	2 cut(s)	271, 383
SmoI	CTYRAG	2 cut(s)	271, 383
Sse9I	AATT	2 cut(s)	322, 340
SsiI	CCGC	2 cut(s)	51, 210
StyI	CCWWGG	1 cut(s)	453
TaqI	TCGA	1 cut(s)	12
TasI	AATT	2 cut(s)	322, 340
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	3 cut(s)	3, 183, 202
TseI	GCWGC	2 cut(s)	233, 236
Tsp45I	GTSAC	3 cut(s)	3, 183, 202
TspDTI	ATGAA	1 cut(s)	18
TspGWI	ACGGA	1 cut(s)	214
TspRI	CASTG	1 cut(s)	12
XapI	RAATTY	1 cut(s)	322
XmiI	GTMKAC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.