Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003892

Physical Location & Seq

Genomic Coordinates Reverse (-)

62404411 .. 62405097

Gene Structure 687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030489

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCTCTTCTTCCTTCTCCTAGTAGTAGAAACATGGAACTGTTACCTGATCAAAGGAGGGCTCGCAAGAAGATGTATCGAGATCGAAAGATGAATATATTTAAGAAGGGGGAGGAGCTATCCATACTTTGTGGTATTGATGTCGCTGTGATTCTGTTCCAACCAGCTGACGAGAGTACTACTGCTCAACCAGCTGCAGAGACTTGGCCTAAAGATCCTACAGTAATCAAGGGCATTATCCGCAGATACAAGGCAAAGCCTACCTCCAATCATGCTTCATCTTCTAGCACAAGCCCGCCGGTAATCAAAGATACTACTAGTACTCCATCTTCATCTCCATGTCCATCTCCATCTCCATCTCAAAGTCTACTAGGGAAGAGAAATTACTTAAACTTGGATTTGTCTTTGTCTGGTTTTTATGACTCGCCAACGAAAATTTTAAAAGAGGACAAAGGTAAGAAGAAATTGCGTGCTGATAATAATGGGAATATAAATTCCGAAGAGGCGATGGGGATGCAGTACGAGTTTCAGACAAGATGGAATGCTGCTGGAAAAGATGAATTATACAAGGACGACAACGAATTGAGGATTGGATATGATGATCATGAGGCAAAGCTTGCTTCACTGGAAGCTAAGCGAGAAGCTATAACAAAGAGGATTGCTTCATTGGAGGCGAGTTATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

229

Amino Acids

25.43

Weight (kDa)

9.16

Isoelectric Point (pI)

65.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	19 - 60	8.3e-11	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13470
fragaria_vesca	FvH4_7g01990 FvH4_7g02000 FvH4_7g02110
malus_domestica	MD02G1298000.v1.1 MD07G1026200.v1.1
prunus_persica	Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1
pyrus_communis	pycom02g25090
rosa_chinensis	RchiOBHm_Chr1g0318991
rosa_laevigata	RLG00000030489 RLG00000030510 RLG00000030511
rosa_multiflora	Rmu_sc0003503.1_g000002 Rmu_sc0005870.1_g000006 Rmu_sc0006626.1_g000002 Rmu_sc0006626.1_g000003
rosa_roxburghii	Rroxscaffold_4G00328700
rosa_rugosa	Rorug01G0026300 Rorug01G0027300
rosa_samantha	Rh1AG038100 Rh1AG038200 Rh1AG039600 Rh1AG263000 Rh1BG034400 Rh1BG034500 Rh1BG036400 Rh1CG037100 Rh1DG032900 Rh1DG033000
rosa_wichuraiana	Rw1G002940 Rw1G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	367
AciI	CCGC	2 cut(s)	241, 296
AclWI	GGATC	1 cut(s)	209
AcsI	RAATTY	2 cut(s)	435, 493
AfaI	GTAC	3 cut(s)	178, 322, 521
AhlI	ACTAGT	1 cut(s)	317
AjuI	GAANNNNNNNTTGG	2 cut(s)	573, 605
AluBI	AGCT	6 cut(s)	118, 167, 194, 616, 632, 644
AluI	AGCT	6 cut(s)	118, 167, 194, 616, 632, 644
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	1 cut(s)	209
AoxI	GGCC	1 cut(s)	206
ApeKI	GCWGC	2 cut(s)	194, 545
ApoI	RAATTY	2 cut(s)	435, 493
BanII	GRGCYC	1 cut(s)	64
BarI	GAAGNNNNNNTAC	4 cut(s)	313, 345, 368, 400
BbvI	GCAGC	2 cut(s)	181, 532
BccI	CCATC	6 cut(s)	334, 352, 358, 364, 502, 531
BcgI	CGANNNNNNTGC	2 cut(s)	496, 530
BclI	TGATCA	2 cut(s)	49, 601
BcoDI	GTCTC	1 cut(s)	194
BcuI	ACTAGT	1 cut(s)	317
BfaI	CTAG	4 cut(s)	21, 285, 318, 371
BfmI	CTRYAG	2 cut(s)	195, 219
BisI	GCNGC	2 cut(s)	195, 546
BlpI	GCTNAGC	1 cut(s)	633
BlsI	GCNGC	2 cut(s)	196, 547
BmcAI	AGTACT	2 cut(s)	178, 322
BmsI	GCATC	1 cut(s)	504
Bpu1102I	GCTNAGC	1 cut(s)	633
BsaXI	ACNNNNNCTCC	2 cut(s)	307, 337
Bse118I	RCCGGY	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	630
BseGI	GGATG	1 cut(s)	519
BseNI	ACTGG	1 cut(s)	630
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	2 cut(s)	181, 532
BshFI	GGCC	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	299
BsmAI	GTCTC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	4 cut(s)	49, 82, 214, 601
Bsp1720I	GCTNAGC	1 cut(s)	633
BspACI	CCGC	2 cut(s)	241, 296
BspANI	GGCC	1 cut(s)	208
BspHI	TCATGA	1 cut(s)	604
BspMAI	CTGCAG	1 cut(s)	199
BspPI	GGATC	1 cut(s)	209
BspQI	GCTCTTC	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	630
BssAI	RCCGGY	1 cut(s)	298
BssMI	GATC	4 cut(s)	49, 82, 214, 601
Bst4CI	ACNGT	2 cut(s)	42, 223
Bst6I	CTCTTC	3 cut(s)	12, 371, 495
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstC8I	GCNNGC	4 cut(s)	64, 296, 471, 618
BstDEI	CTNAG	1 cut(s)	633
BstF5I	GGATG	1 cut(s)	519
BstKTI	GATC	4 cut(s)	52, 85, 217, 604
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	4 cut(s)	49, 82, 214, 601
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 240, 617
BstSFI	CTRYAG	2 cut(s)	195, 219
BstV1I	GCAGC	2 cut(s)	181, 532
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	208
BtgZI	GCGATG	1 cut(s)	521
BtsCI	GGATG	1 cut(s)	519
BtsIMutI	CAGTG	1 cut(s)	623
Cac8I	GCNNGC	4 cut(s)	64, 296, 471, 618
CciI	TCATGA	1 cut(s)	604
Cfr10I	RCCGGY	1 cut(s)	298
Csp6I	GTAC	3 cut(s)	177, 321, 520
CviAII	CATG	4 cut(s)	34, 272, 339, 605
CviQI	GTAC	3 cut(s)	177, 321, 520
DdeI	CTNAG	1 cut(s)	633
DpnI	GATC	4 cut(s)	51, 84, 216, 603
DpnII	GATC	4 cut(s)	49, 82, 214, 601
DraI	TTTAAA	1 cut(s)	441
Eam1104I	CTCTTC	3 cut(s)	12, 371, 495
EarI	CTCTTC	3 cut(s)	12, 371, 495
Eco24I	GRGCYC	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	64
FaeI	CATG	4 cut(s)	37, 275, 342, 608
FatI	CATG	4 cut(s)	33, 271, 338, 604
FauI	CCCGC	1 cut(s)	303
FbaI	TGATCA	2 cut(s)	49, 601
FblI	GTMKAC	1 cut(s)	367
Fnu4HI	GCNGC	2 cut(s)	195, 546
FokI	GGATG	1 cut(s)	526
FriOI	GRGCYC	1 cut(s)	64
Fsp4HI	GCNGC	2 cut(s)	195, 546
FspBI	CTAG	4 cut(s)	21, 285, 318, 371
GluI	GCNGC	2 cut(s)	195, 546
HaeIII	GGCC	1 cut(s)	208
HapII	CCGG	1 cut(s)	299
Hin1II	CATG	4 cut(s)	37, 275, 342, 608
HindIII	AAGCTT	1 cut(s)	614
HinfI	GANTC	2 cut(s)	151, 422
HpaII	CCGG	1 cut(s)	299
Hpy166II	GTNNAC	1 cut(s)	368
Hpy188I	TCNGA	2 cut(s)	499, 531
Hpy188III	TCNNGA	2 cut(s)	80, 605
Hpy8I	GTNNAC	1 cut(s)	368
HpyAV	CCTTC	2 cut(s)	24, 100
HpyCH4III	ACNGT	2 cut(s)	42, 223
HpyCH4V	TGCA	2 cut(s)	197, 517
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 240, 617
HpyF3I	CTNAG	1 cut(s)	633
Hsp92II	CATG	4 cut(s)	37, 275, 342, 608
Ksp22I	TGATCA	2 cut(s)	49, 601
Kzo9I	GATC	4 cut(s)	49, 82, 214, 601
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	7 cut(s)	60, 177, 204, 312, 396, 534, 611
Lsp1109I	GCAGC	2 cut(s)	181, 532
LweI	GCATC	1 cut(s)	504
MaeI	CTAG	4 cut(s)	21, 285, 318, 371
MaeIII	GTNAC	1 cut(s)	42
MalI	GATC	4 cut(s)	51, 84, 216, 603
MboI	GATC	4 cut(s)	49, 82, 214, 601
MboII	GAAGA	6 cut(s)	82, 273, 321, 388, 472, 512
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	6 cut(s)	382, 435, 464, 493, 560, 581
MlyI	GAGTC	1 cut(s)	416
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	9 cut(s)	51, 106, 274, 439, 496, 579, 601, 648, 664
MseI	TTAA	4 cut(s)	102, 389, 440, 685
MslI	CAYNNNNRTG	1 cut(s)	337
MspA1I	CMGCKG	2 cut(s)	167, 194
MspI	CCGG	1 cut(s)	299
Mva1269I	GAATGC	1 cut(s)	547
MwoI	GCNNNNNNNGC	3 cut(s)	191, 240, 617
NdeII	GATC	4 cut(s)	49, 82, 214, 601
NlaIII	CATG	4 cut(s)	37, 275, 342, 608
PagI	TCATGA	1 cut(s)	604
PciSI	GCTCTTC	1 cut(s)	12
PctI	GAATGC	1 cut(s)	547
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	2 cut(s)	196, 547
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
PstI	CTGCAG	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	214
PvuII	CAGCTG	2 cut(s)	167, 194
RsaI	GTAC	3 cut(s)	178, 322, 521
RsaNI	GTAC	3 cut(s)	177, 321, 520
RseI	CAYNNNNRTG	1 cut(s)	337
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	4 cut(s)	102, 389, 440, 685
SatI	GCNGC	2 cut(s)	195, 546
Sau3AI	GATC	4 cut(s)	49, 82, 214, 601
ScaI	AGTACT	2 cut(s)	178, 322
SchI	GAGTC	1 cut(s)	416
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	9 cut(s)	49, 120, 169, 196, 266, 457, 618, 634, 646
SfaNI	GCATC	1 cut(s)	504
SfcI	CTRYAG	2 cut(s)	195, 219
SmiMI	CAYNNNNRTG	1 cut(s)	337
SpeI	ACTAGT	1 cut(s)	317
Sse9I	AATT	6 cut(s)	382, 435, 464, 493, 560, 581
SsiI	CCGC	2 cut(s)	241, 296
SspMI	CTAG	4 cut(s)	21, 285, 318, 371
TaaI	ACNGT	2 cut(s)	42, 223
TaqI	TCGA	2 cut(s)	79, 85
TasI	AATT	6 cut(s)	382, 435, 464, 493, 560, 581
TatI	WGTACW	2 cut(s)	176, 320
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	4 cut(s)	102, 389, 440, 685
Tru9I	TTAA	4 cut(s)	102, 389, 440, 685
TscAI	CASTG	1 cut(s)	630
TseI	GCWGC	2 cut(s)	194, 545
TspDTI	ATGAA	5 cut(s)	107, 267, 321, 573, 654
TspRI	CASTG	1 cut(s)	630
XapI	RAATTY	2 cut(s)	435, 493
XmiI	GTMKAC	1 cut(s)	367
XspI	CTAG	4 cut(s)	21, 285, 318, 371
ZrmI	AGTACT	2 cut(s)	178, 322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.