Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003892

Physical Location & Seq

Genomic Coordinates Forward (+)

4479354 .. 4480316

Gene Structure 963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0026300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGAAATCAGCTCTTGTTATCCTCTTCTTCTTCTTCTTTCTGTCTGTTCACCAAGCCCAAGCAGCATCATTTTCACTCCCAAACCTAAACCATCACGAAATACCCATCCATGTACCACAGCCCGAAAGCATTGCTTTCGACTGCAATGGCGCACCGTACGTGGGTGTGGCTGATGGCAGGATATTCAAGTGGCTAGGATACCCTTTTGGGTGGAGAGAATTCGCAGTCACCGGCCCCAATAGGCCGAGAGGAGTATGTGATTTAACAACCAACAAAGACAATGAACCGATATGCGGGAGGCCACTTGGTTTAAAATTTGACCTCACAACATGTGAACTGTATATCGCAGATGCCTATTTTGGGCTTCTGAAGACAGGACCAAATGGTGGAGTAGCTCAAATACTTGCGACATCTGCTGAAGGAGTTCCTTTCCGTTTCTTAAACGGTGTCGACATTGATCGCCAAAGTGGAATGGTGTACTTCACAGACACCAGTGCTATTTACCAGAGAAGAAATTGGGAATTGTCAGTTAGTACAGGTGATAAAACTGGAAGGTTAATGCGATATGATCCATGGACAAAGAATGTCACTGTGTTGCGTCATGACTTGTCTTTTGCAAACGGGGTGGCACTAAGCAAAGACGGTGATTTTGTGCTAGTAACCCAAACCACTGCAAAGAACATTTTGAGGTATTGGCTTCGAGGGCCTAGAGCCAACACTGTTGATATTTTTTTCCAACTGCAAGGAGCCCCGGACAATATCATCAGAAACATAAATGGAGAATTTTGGGTTGCAGAAAATAGTGCCGGAAAAGGTAAAGCGGTCAAGCTCGACGCTCAAGGAAACTTTCTAGACGTGGTGGATGGACTCAACCCTGTGAGTCATGTTGAGCAGCGTTATAGAAACCTTTGGATAGGATCTGTGGTTAATAACTTTGTTGGGGTTATTCTTAATTTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

320

Amino Acids

35.61

Weight (kDa)

7.69

Isoelectric Point (pI)

22.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Str_synth	PF03088	148 - 235	7.1e-30	Strictosidine synthase
SGL	PF08450	179 - 288	3.1e-10	SMP-30/Gluconolactonase/LRE-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13470
fragaria_vesca	FvH4_7g01990 FvH4_7g02000 FvH4_7g02110
malus_domestica	MD02G1298000.v1.1 MD07G1026200.v1.1
prunus_persica	Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1
pyrus_communis	pycom02g25090
rosa_chinensis	RchiOBHm_Chr1g0318991
rosa_laevigata	RLG00000030489 RLG00000030510 RLG00000030511
rosa_multiflora	Rmu_sc0003503.1_g000002 Rmu_sc0005870.1_g000006 Rmu_sc0006626.1_g000002 Rmu_sc0006626.1_g000003
rosa_roxburghii	Rroxscaffold_4G00328700
rosa_rugosa	Rorug01G0026300 Rorug01G0027300
rosa_samantha	Rh1AG038100 Rh1AG038200 Rh1AG039600 Rh1AG263000 Rh1BG034400 Rh1BG034500 Rh1BG036400 Rh1CG037100 Rh1DG032900 Rh1DG033000
rosa_wichuraiana	Rw1G002940 Rw1G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	386
AccI	GTMKAC	1 cut(s)	450
AciI	CCGC	2 cut(s)	294, 821
AclWI	GGATC	2 cut(s)	563, 925
AcsI	RAATTY	3 cut(s)	218, 314, 782
AcuI	CTGAAG	2 cut(s)	389, 438
AfaI	GTAC	4 cut(s)	114, 158, 479, 535
AfiI	CCNNNNNNNGG	4 cut(s)	161, 293, 360, 386
AflIII	ACRYGT	1 cut(s)	329
AgsI	TTSAA	1 cut(s)	187
AjiI	CACGTC	1 cut(s)	856
AluBI	AGCT	3 cut(s)	11, 395, 829
AluI	AGCT	3 cut(s)	11, 395, 829
AlwI	GGATC	2 cut(s)	563, 925
AoxI	GGCC	4 cut(s)	232, 242, 299, 704
ApeKI	GCWGC	2 cut(s)	62, 892
ApoI	RAATTY	3 cut(s)	218, 314, 782
ArsI	GACNNNNNNTTYG	4 cut(s)	596, 628, 632, 664
Asp700I	GAANNNNTTC	1 cut(s)	423
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	3 cut(s)	233, 377, 704
AsuC2I	CCSGG	1 cut(s)	752
AsuHPI	GGTGA	4 cut(s)	41, 220, 551, 656
AvaII	GGWCC	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	751
BbsI	GAAGAC	1 cut(s)	377
BbvI	GCAGC	2 cut(s)	74, 904
BccI	CCATC	4 cut(s)	99, 113, 167, 857
BcgI	CGANNNNNNTGC	4 cut(s)	113, 118, 147, 152
BciVI	GTATCC	1 cut(s)	191
BcnI	CCSGG	1 cut(s)	752
BfaI	CTAG	4 cut(s)	194, 656, 708, 851
BfuI	GTATCC	1 cut(s)	191
BisI	GCNGC	2 cut(s)	63, 893
BlsI	GCNGC	2 cut(s)	64, 894
Bme1390I	CCNGG	1 cut(s)	752
Bme18I	GGWCC	1 cut(s)	377
BmgBI	CACGTC	1 cut(s)	856
BmgT120I	GGNCC	3 cut(s)	233, 377, 704
BmiI	GGNNCC	2 cut(s)	235, 748
BmrFI	CCNGG	1 cut(s)	752
BmsI	GCATC	2 cut(s)	74, 340
BpiI	GAAGAC	1 cut(s)	377
BpuEI	CTTGAG	1 cut(s)	822
BpuMI	CCSGG	1 cut(s)	752
BsaAI	YACGTR	1 cut(s)	160
BsaJI	CCNNGG	2 cut(s)	572, 750
Bsc4I	CCNNNNNNNGG	4 cut(s)	161, 293, 360, 386
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	2 cut(s)	492, 553
Bse3DI	GCAATG	2 cut(s)	129, 151
BseDI	CCNNGG	2 cut(s)	572, 750
BseGI	GGATG	2 cut(s)	105, 868
BseLI	CCNNNNNNNGG	4 cut(s)	161, 293, 360, 386
BseMI	GCAATG	2 cut(s)	129, 151
BseNI	ACTGG	2 cut(s)	492, 553
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	2 cut(s)	74, 904
BshFI	GGCC	4 cut(s)	234, 244, 301, 706
BsiSI	CCGG	3 cut(s)	231, 752, 807
BsiWI	CGTACG	1 cut(s)	156
BslI	CCNNNNNNNGG	4 cut(s)	161, 293, 360, 386
BsnI	GGCC	4 cut(s)	234, 244, 301, 706
Bsp1286I	GDGCHC	1 cut(s)	751
Bsp143I	GATC	3 cut(s)	457, 568, 917
Bsp19I	CCATGG	1 cut(s)	572
BspACI	CCGC	2 cut(s)	294, 821
BspANI	GGCC	4 cut(s)	234, 244, 301, 706
BspHI	TCATGA	1 cut(s)	601
BspLI	GGNNCC	2 cut(s)	235, 748
BspPI	GGATC	2 cut(s)	563, 925
BsrDI	GCAATG	2 cut(s)	129, 151
BsrFI	RCCGGY	1 cut(s)	230
BsrI	ACTGG	2 cut(s)	492, 553
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	2 cut(s)	572, 750
BssMI	GATC	3 cut(s)	457, 568, 917
BssT1I	CCWWGG	1 cut(s)	572
Bst4CI	ACNGT	6 cut(s)	156, 339, 446, 592, 644, 721
Bst6I	CTCTTC	1 cut(s)	29
BstBAI	YACGTR	1 cut(s)	160
BstDEI	CTNAG	1 cut(s)	632
BstDSI	CCRYGG	1 cut(s)	572
BstF5I	GGATG	2 cut(s)	105, 868
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	3 cut(s)	460, 571, 920
BstMBI	GATC	3 cut(s)	457, 568, 917
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 413, 703
BstNSI	RCATGY	1 cut(s)	333
BstSCI	CCNGG	1 cut(s)	750
BstV1I	GCAGC	2 cut(s)	74, 904
BstV2I	GAAGAC	1 cut(s)	377
BstX2I	RGATCY	1 cut(s)	917
BstYI	RGATCY	1 cut(s)	917
BsuI	GTATCC	1 cut(s)	191
BsuRI	GGCC	4 cut(s)	234, 244, 301, 706
BtgI	CCRYGG	1 cut(s)	572
BtrI	CACGTC	1 cut(s)	856
BtsCI	GGATG	2 cut(s)	105, 868
BtsI	GCAGTG	1 cut(s)	669
BtsIMutI	CAGTG	4 cut(s)	499, 588, 669, 717
CciI	TCATGA	1 cut(s)	601
CfoI	GCGC	1 cut(s)	152
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	3 cut(s)	233, 377, 704
CseI	GACGC	2 cut(s)	587, 842
Csp6I	GTAC	4 cut(s)	113, 157, 478, 534
CspCI	CAANNNNNGTGG	2 cut(s)	606, 641
CviAII	CATG	5 cut(s)	110, 330, 573, 602, 884
CviQI	GTAC	4 cut(s)	113, 157, 478, 534
DdeI	CTNAG	1 cut(s)	632
DpnI	GATC	3 cut(s)	459, 570, 919
DpnII	GATC	3 cut(s)	457, 568, 917
DraI	TTTAAA	1 cut(s)	312
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	572
Eco24I	GRGCYC	1 cut(s)	751
Eco47I	GGWCC	1 cut(s)	377
Eco57I	CTGAAG	2 cut(s)	389, 438
EcoO109I	RGGNCCY	1 cut(s)	704
EcoRI	GAATTC	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	572
EcoT38I	GRGCYC	1 cut(s)	751
ErhI	CCWWGG	1 cut(s)	572
FaeI	CATG	5 cut(s)	113, 333, 576, 605, 887
FalI	AAGNNNNNCTT	2 cut(s)	118, 150
FatI	CATG	5 cut(s)	109, 329, 572, 601, 883
FauI	CCCGC	1 cut(s)	287
FblI	GTMKAC	1 cut(s)	450
Fnu4HI	GCNGC	2 cut(s)	63, 893
FokI	GGATG	2 cut(s)	92, 875
FriOI	GRGCYC	1 cut(s)	751
Fsp4HI	GCNGC	2 cut(s)	63, 893
FspBI	CTAG	4 cut(s)	194, 656, 708, 851
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	2 cut(s)	63, 893
HaeIII	GGCC	4 cut(s)	234, 244, 301, 706
HapII	CCGG	3 cut(s)	231, 752, 807
HgaI	GACGC	2 cut(s)	587, 842
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	5 cut(s)	113, 333, 576, 605, 887
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HinfI	GANTC	2 cut(s)	867, 880
HpaII	CCGG	3 cut(s)	231, 752, 807
HphI	GGTGA	4 cut(s)	41, 220, 551, 656
Hpy166II	GTNNAC	4 cut(s)	49, 335, 451, 478
Hpy188I	TCNGA	2 cut(s)	369, 767
Hpy188III	TCNNGA	3 cut(s)	95, 602, 851
Hpy8I	GTNNAC	4 cut(s)	49, 335, 451, 478
Hpy99I	CGWCG	1 cut(s)	836
HpyAV	CCTTC	2 cut(s)	413, 546
HpyCH4III	ACNGT	6 cut(s)	156, 339, 446, 592, 644, 721
HpyCH4IV	ACGT	2 cut(s)	159, 855
HpyCH4V	TGCA	5 cut(s)	144, 617, 674, 742, 794
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 413, 703
HpyF3I	CTNAG	1 cut(s)	632
HpySE526I	ACGT	2 cut(s)	159, 855
Hsp92II	CATG	5 cut(s)	113, 333, 576, 605, 887
HspAI	GCGC	1 cut(s)	150
Kzo9I	GATC	3 cut(s)	457, 568, 917
LmnI	GCTCC	1 cut(s)	746
Lsp1109I	GCAGC	2 cut(s)	74, 904
LweI	GCATC	2 cut(s)	74, 340
MaeI	CTAG	4 cut(s)	194, 656, 708, 851
MaeII	ACGT	2 cut(s)	159, 855
MaeIII	GTNAC	3 cut(s)	226, 586, 658
MalI	GATC	3 cut(s)	459, 570, 919
MboI	GATC	3 cut(s)	457, 568, 917
MboII	GAAGA	6 cut(s)	16, 19, 22, 25, 382, 522
MflI	RGATCY	1 cut(s)	917
MhlI	GDGCHC	1 cut(s)	751
MluCI	AATT	6 cut(s)	218, 314, 514, 521, 782, 952
MlyI	GAGTC	2 cut(s)	861, 889
MmeI	TCCRAC	1 cut(s)	760
MnlI	CCTC	6 cut(s)	32, 242, 291, 332, 681, 695
MroXI	GAANNNNTTC	1 cut(s)	423
MseI	TTAA	6 cut(s)	263, 311, 440, 557, 927, 951
MspI	CCGG	3 cut(s)	231, 752, 807
MspR9I	CCNGG	1 cut(s)	752
MwoI	GCNNNNNNNGC	3 cut(s)	62, 413, 703
NciI	CCSGG	1 cut(s)	752
NcoI	CCATGG	1 cut(s)	572
NdeII	GATC	3 cut(s)	457, 568, 917
NlaIII	CATG	5 cut(s)	113, 333, 576, 605, 887
NlaIV	GGNNCC	2 cut(s)	235, 748
NmeAIII	GCCGAG	1 cut(s)	270
NmuCI	GTSAC	2 cut(s)	226, 586
NspI	RCATGY	1 cut(s)	333
PagI	TCATGA	1 cut(s)	601
PciI	ACATGT	1 cut(s)	329
PdmI	GAANNNNTTC	1 cut(s)	423
Pfl23II	CGTACG	1 cut(s)	156
PflMI	CCANNNNNTGG	1 cut(s)	386
PkrI	GCNGC	2 cut(s)	64, 894
PleI	GAGTC	2 cut(s)	861, 888
PpsI	GAGTC	2 cut(s)	861, 888
Ppu21I	YACGTR	1 cut(s)	160
PscI	ACATGT	1 cut(s)	329
PspLI	CGTACG	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	235, 748
PspPI	GGNCC	3 cut(s)	233, 377, 704
PsuI	RGATCY	1 cut(s)	917
RsaI	GTAC	4 cut(s)	114, 158, 479, 535
RsaNI	GTAC	4 cut(s)	113, 157, 478, 534
SalI	GTCGAC	1 cut(s)	449
SaqAI	TTAA	6 cut(s)	263, 311, 440, 557, 927, 951
SatI	GCNGC	2 cut(s)	63, 893
Sau3AI	GATC	3 cut(s)	457, 568, 917
Sau96I	GGNCC	3 cut(s)	233, 377, 704
SchI	GAGTC	2 cut(s)	861, 889
ScrFI	CCNGG	1 cut(s)	752
SduI	GDGCHC	1 cut(s)	751
SfaNI	GCATC	2 cut(s)	74, 340
SinI	GGWCC	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	837
SmoI	CTYRAG	1 cut(s)	837
Sse9I	AATT	6 cut(s)	218, 314, 514, 521, 782, 952
SsiI	CCGC	2 cut(s)	294, 821
SspMI	CTAG	4 cut(s)	194, 656, 708, 851
StyD4I	CCNGG	1 cut(s)	750
StyI	CCWWGG	1 cut(s)	572
TaaI	ACNGT	6 cut(s)	156, 339, 446, 592, 644, 721
TaiI	ACGT	2 cut(s)	162, 858
TaqI	TCGA	4 cut(s)	138, 450, 700, 831
TasI	AATT	6 cut(s)	218, 314, 514, 521, 782, 952
TatI	WGTACW	2 cut(s)	477, 533
Tru1I	TTAA	6 cut(s)	263, 311, 440, 557, 927, 951
Tru9I	TTAA	6 cut(s)	263, 311, 440, 557, 927, 951
TscAI	CASTG	4 cut(s)	499, 595, 676, 724
TseFI	GTSAC	2 cut(s)	226, 586
TseI	GCWGC	2 cut(s)	62, 892
Tsp45I	GTSAC	2 cut(s)	226, 586
TspDTI	ATGAA	2 cut(s)	17, 297
TspGWI	ACGGA	1 cut(s)	422
TspRI	CASTG	4 cut(s)	499, 595, 676, 724
Van91I	CCANNNNNTGG	1 cut(s)	386
VpaK11BI	GGWCC	1 cut(s)	377
XapI	RAATTY	3 cut(s)	218, 314, 782
XbaI	TCTAGA	1 cut(s)	850
XceI	RCATGY	1 cut(s)	333
XmiI	GTMKAC	1 cut(s)	450
XmnI	GAANNNNTTC	1 cut(s)	423
XspI	CTAG	4 cut(s)	194, 656, 708, 851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.