Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003892

Physical Location & Seq

Genomic Coordinates Reverse (-)

2449470 .. 2450126

Gene Structure 657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g02110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCTCTTCTTCCTTGTCCAAATAATAGAAACATGGAACTGTTACCTGATCAGAGGAGGGCTCGCAAGAAGATGTATCGCCGAAAGATGAATATATTTAAGAAGGCGGAGGAGCTTTCCATACTCTGTGGTATCGATGTCGCTGTAATCCTGTTCCAACCAGCTGACAAGAGTACCACTGCTCCACCAGCAGTAGAGACTTGGCCTAAAGATCCTACAGAAATCAAGCGCATTATCCGCAGATACCAGGCAAAGAGTTCCTGCAGTCACGCCTCATCTTCTAACACAAGCCTGCCGGCAATCAAAGATCCTTCATCTTCATCTCCATCTCCAAGTGTGCTAGGGAAGATAAACTGCTCAAACTTGGATTTGTCCTTGTCTGGTTTTTATGATTCGCGAATGAAAATTTTAAAGGATGACAGAGGCAAGAAGAAGTTGCATGTTGATAGTGATGAGAACATAAATTCCGAAGAGGCATTGGGGATGCAGTACGAATTTCACACTAATTGGAATGTTGCTGGAGAAAATGAAATGTACAAGGTTGACAACGAATTGAGGATTGGATATCATGATCATGAGGCAAAGCTTGCTTCACTGGAAGCTAAGAGAGAAGCTATAACAAAGAGGATTGCTTCGTTGGAGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

216

Amino Acids

24.25

Weight (kDa)

8.95

Isoelectric Point (pI)

56.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	26 - 60	2.1e-12	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13470
fragaria_vesca	FvH4_7g01990 FvH4_7g02000 FvH4_7g02110
malus_domestica	MD02G1298000.v1.1 MD07G1026200.v1.1
prunus_persica	Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1
pyrus_communis	pycom02g25090
rosa_chinensis	RchiOBHm_Chr1g0318991
rosa_laevigata	RLG00000030489 RLG00000030510 RLG00000030511
rosa_multiflora	Rmu_sc0003503.1_g000002 Rmu_sc0005870.1_g000006 Rmu_sc0006626.1_g000002 Rmu_sc0006626.1_g000003
rosa_roxburghii	Rroxscaffold_4G00328700
rosa_rugosa	Rorug01G0026300 Rorug01G0027300
rosa_samantha	Rh1AG038100 Rh1AG038200 Rh1AG039600 Rh1AG263000 Rh1BG034400 Rh1BG034500 Rh1BG036400 Rh1CG037100 Rh1DG032900 Rh1DG033000
rosa_wichuraiana	Rw1G002940 Rw1G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	397
AciI	CCGC	2 cut(s)	107, 238
AclWI	GGATC	2 cut(s)	206, 302
AcsI	RAATTY	3 cut(s)	405, 463, 494
AfaI	GTAC	3 cut(s)	175, 491, 536
AjnI	CCWGG	1 cut(s)	246
AjuI	GAANNNNNNNTTGG	2 cut(s)	543, 575
AloI	GAACNNNNNNTCC	2 cut(s)	449, 481
AluBI	AGCT	5 cut(s)	115, 164, 586, 602, 614
AluI	AGCT	5 cut(s)	115, 164, 586, 602, 614
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	2 cut(s)	206, 302
AoxI	GGCC	1 cut(s)	203
ApoI	RAATTY	3 cut(s)	405, 463, 494
AspLEI	GCGC	1 cut(s)	231
BaeI	ACNNNNGTAYC	2 cut(s)	157, 190
BanII	GRGCYC	1 cut(s)	64
BccI	CCATC	1 cut(s)	334
BciT130I	CCWGG	1 cut(s)	248
BclI	TGATCA	2 cut(s)	49, 571
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	2 cut(s)	341, 646
BfmI	CTRYAG	2 cut(s)	216, 262
Bme1390I	CCNGG	1 cut(s)	248
BmrFI	CCNGG	1 cut(s)	248
BmsI	GCATC	1 cut(s)	474
BplI	GAGNNNNNCTC	2 cut(s)	46, 78
BpmI	CTGGAG	1 cut(s)	540
Bsa29I	ATCGAT	1 cut(s)	135
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bse118I	RCCGGY	1 cut(s)	295
Bse1I	ACTGG	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	248
BseCI	ATCGAT	1 cut(s)	135
BseGI	GGATG	2 cut(s)	421, 489
BseNI	ACTGG	1 cut(s)	600
BseRI	GAGGAG	2 cut(s)	70, 125
Bsh1236I	CGCG	1 cut(s)	397
BshFI	GGCC	1 cut(s)	205
BshVI	ATCGAT	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	296
BsmAI	GTCTC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp1407I	TGTACA	1 cut(s)	534
Bsp143I	GATC	4 cut(s)	49, 211, 307, 571
Bsp68I	TCGCGA	1 cut(s)	397
BspACI	CCGC	2 cut(s)	107, 238
BspANI	GGCC	1 cut(s)	205
BspDI	ATCGAT	1 cut(s)	135
BspFNI	CGCG	1 cut(s)	397
BspHI	TCATGA	2 cut(s)	568, 574
BspMAI	CTGCAG	1 cut(s)	266
BspPI	GGATC	2 cut(s)	206, 302
BspQI	GCTCTTC	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	295
BsrGI	TGTACA	1 cut(s)	534
BsrI	ACTGG	1 cut(s)	600
BssAI	RCCGGY	1 cut(s)	295
BssMI	GATC	4 cut(s)	49, 211, 307, 571
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	1 cut(s)	42
Bst6I	CTCTTC	2 cut(s)	12, 465
BstAPI	GCANNNNNTGC	1 cut(s)	587
BstAUI	TGTACA	1 cut(s)	534
BstC8I	GCNNGC	4 cut(s)	64, 293, 297, 588
BstDEI	CTNAG	1 cut(s)	603
BstF5I	GGATG	2 cut(s)	421, 489
BstFNI	CGCG	1 cut(s)	397
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	4 cut(s)	52, 214, 310, 574
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	4 cut(s)	49, 211, 307, 571
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 237, 587
BstNI	CCWGG	1 cut(s)	248
BstNSI	RCATGY	1 cut(s)	443
BstSCI	CCNGG	1 cut(s)	246
BstSFI	CTRYAG	2 cut(s)	216, 262
BstUI	CGCG	1 cut(s)	397
BstX2I	RGATCY	2 cut(s)	211, 307
BstYI	RGATCY	2 cut(s)	211, 307
Bsu15I	ATCGAT	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	205
BsuTUI	ATCGAT	1 cut(s)	135
BtsCI	GGATG	2 cut(s)	421, 489
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	2 cut(s)	177, 593
BtuMI	TCGCGA	1 cut(s)	397
Cac8I	GCNNGC	4 cut(s)	64, 293, 297, 588
CciI	TCATGA	2 cut(s)	568, 574
CfoI	GCGC	1 cut(s)	231
Cfr10I	RCCGGY	1 cut(s)	295
ClaI	ATCGAT	1 cut(s)	135
Csp6I	GTAC	3 cut(s)	174, 490, 535
CviAII	CATG	4 cut(s)	34, 440, 569, 575
CviQI	GTAC	3 cut(s)	174, 490, 535
DdeI	CTNAG	1 cut(s)	603
DpnI	GATC	4 cut(s)	51, 213, 309, 573
DpnII	GATC	4 cut(s)	49, 211, 307, 571
DraI	TTTAAA	1 cut(s)	411
Eam1104I	CTCTTC	2 cut(s)	12, 465
EarI	CTCTTC	2 cut(s)	12, 465
EciI	GGCGGA	1 cut(s)	122
Eco24I	GRGCYC	1 cut(s)	64
Eco32I	GATATC	1 cut(s)	566
EcoRII	CCWGG	1 cut(s)	246
EcoRV	GATATC	1 cut(s)	566
EcoT38I	GRGCYC	1 cut(s)	64
FaeI	CATG	4 cut(s)	37, 443, 572, 578
FaiI	YATR	9 cut(s)	35, 95, 122, 390, 441, 461, 570, 576, 617
FatI	CATG	4 cut(s)	33, 439, 568, 574
FbaI	TGATCA	2 cut(s)	49, 571
FokI	GGATG	2 cut(s)	428, 496
FriOI	GRGCYC	1 cut(s)	64
FspBI	CTAG	2 cut(s)	341, 646
GlaI	GCGC	1 cut(s)	230
GsuI	CTGGAG	1 cut(s)	540
HaeIII	GGCC	1 cut(s)	205
HapII	CCGG	1 cut(s)	296
HhaI	GCGC	1 cut(s)	231
Hin1II	CATG	4 cut(s)	37, 443, 572, 578
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	1 cut(s)	392
HpaII	CCGG	1 cut(s)	296
Hpy166II	GTNNAC	1 cut(s)	544
Hpy188I	TCNGA	2 cut(s)	54, 469
Hpy188III	TCNNGA	3 cut(s)	396, 569, 575
Hpy8I	GTNNAC	1 cut(s)	544
HpyAV	CCTTC	2 cut(s)	97, 321
HpyCH4III	ACNGT	1 cut(s)	42
HpyCH4V	TGCA	3 cut(s)	264, 439, 487
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 237, 587
HpyF3I	CTNAG	1 cut(s)	603
Hsp92II	CATG	4 cut(s)	37, 443, 572, 578
HspAI	GCGC	1 cut(s)	229
KroI	GCCGGC	1 cut(s)	295
KroNI	GCCGGC	1 cut(s)	297
Ksp22I	TGATCA	2 cut(s)	49, 571
Kzo9I	GATC	4 cut(s)	49, 211, 307, 571
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	2 cut(s)	112, 187
LweI	GCATC	1 cut(s)	474
MaeI	CTAG	2 cut(s)	341, 646
MaeIII	GTNAC	2 cut(s)	42, 266
MalI	GATC	4 cut(s)	51, 213, 309, 573
MboI	GATC	4 cut(s)	49, 211, 307, 571
MboII	GAAGA	6 cut(s)	82, 270, 309, 358, 442, 482
MflI	RGATCY	2 cut(s)	211, 307
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	5 cut(s)	405, 463, 494, 505, 551
MmeI	TCCRAC	2 cut(s)	181, 618
MroNI	GCCGGC	1 cut(s)	295
MseI	TTAA	2 cut(s)	99, 410
MslI	CAYNNNNRTG	1 cut(s)	573
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	1 cut(s)	296
MspR9I	CCNGG	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	248
MvnI	CGCG	1 cut(s)	397
MwoI	GCNNNNNNNGC	3 cut(s)	188, 237, 587
NaeI	GCCGGC	1 cut(s)	297
NdeII	GATC	4 cut(s)	49, 211, 307, 571
NgoMIV	GCCGGC	1 cut(s)	295
NlaIII	CATG	4 cut(s)	37, 443, 572, 578
NmuCI	GTSAC	1 cut(s)	266
NruI	TCGCGA	1 cut(s)	397
NspI	RCATGY	1 cut(s)	443
PagI	TCATGA	2 cut(s)	568, 574
PciSI	GCTCTTC	1 cut(s)	12
PdiI	GCCGGC	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PstI	CTGCAG	1 cut(s)	266
PsuI	RGATCY	2 cut(s)	211, 307
PvuII	CAGCTG	1 cut(s)	164
RruI	TCGCGA	1 cut(s)	397
RsaI	GTAC	3 cut(s)	175, 491, 536
RsaNI	GTAC	3 cut(s)	174, 490, 535
RseI	CAYNNNNRTG	1 cut(s)	573
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	99, 410
Sau3AI	GATC	4 cut(s)	49, 211, 307, 571
ScrFI	CCNGG	1 cut(s)	248
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	7 cut(s)	49, 117, 166, 543, 588, 604, 616
SfaNI	GCATC	1 cut(s)	474
SfcI	CTRYAG	2 cut(s)	216, 262
SmiMI	CAYNNNNRTG	1 cut(s)	573
Sse9I	AATT	5 cut(s)	405, 463, 494, 505, 551
SsiI	CCGC	2 cut(s)	107, 238
SspMI	CTAG	2 cut(s)	341, 646
StyD4I	CCNGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	42
TaqI	TCGA	1 cut(s)	135
TasI	AATT	5 cut(s)	405, 463, 494, 505, 551
TatI	WGTACW	1 cut(s)	534
TfiI	GAWTC	1 cut(s)	392
Tru1I	TTAA	2 cut(s)	99, 410
Tru9I	TTAA	2 cut(s)	99, 410
TscAI	CASTG	2 cut(s)	184, 600
TseFI	GTSAC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	5 cut(s)	104, 303, 309, 416, 543
TspRI	CASTG	2 cut(s)	184, 600
XapI	RAATTY	3 cut(s)	405, 463, 494
XceI	RCATGY	1 cut(s)	443
XspI	CTAG	2 cut(s)	341, 646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.