Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003892

Physical Location & Seq

Genomic Coordinates Reverse (-)

2209107 .. 2211940

Gene Structure 2834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1026200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTCGTTGGTGGACTACCCATCTTCAGACGACGAAGTACCGGAGGAGGAGGAGGTTAGGGAAAACAAGGAAAACGAGCCACAACAACAAGTTCCCAGAGACATTCCGGGTCTTCCGACTCGTCCTCACACCCAATCAGTTGTTTTATCACACCAGCAGCCGGAAAGTTCTGCCCGTTCATCAGCTCCTTCAATCCAGCAACTTCCTGATGCTTCGCTGCTCTTGAATTCTCCTGTTTTCTCATCCAATATGGTGAGTGGCAGCGACCACTCTTCTCGTGTTGCAGCTGCAATGGCTGAGAGTTCATCACGTAAGAGAGAGTTGAATGCATTTGCTTCCTCTGTTCCCCGCACTAAAGTTCCCAGAGGTAGCTTGCCTCATTCCAAGAATGTTCCAGATACAGTTGGTGGTCTGCTGGTTCCGCCTCAGCTTAGTGGAAGGAGCAACATTGTAACAGAAGATGTAGGAAAGCTATTTGTCAAAAAGCAAGCTGACCATTCACCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

170

Amino Acids

18.25

Weight (kDa)

5.95

Isoelectric Point (pI)

74.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13470
fragaria_vesca	FvH4_7g01990 FvH4_7g02000 FvH4_7g02110
malus_domestica	MD02G1298000.v1.1 MD07G1026200.v1.1
prunus_persica	Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1
pyrus_communis	pycom02g25090
rosa_chinensis	RchiOBHm_Chr1g0318991
rosa_laevigata	RLG00000030489 RLG00000030510 RLG00000030511
rosa_multiflora	Rmu_sc0003503.1_g000002 Rmu_sc0005870.1_g000006 Rmu_sc0006626.1_g000002 Rmu_sc0006626.1_g000003
rosa_roxburghii	Rroxscaffold_4G00328700
rosa_rugosa	Rorug01G0026300 Rorug01G0027300
rosa_samantha	Rh1AG038100 Rh1AG038200 Rh1AG039600 Rh1AG263000 Rh1BG034400 Rh1BG034500 Rh1BG036400 Rh1CG037100 Rh1DG032900 Rh1DG033000
rosa_wichuraiana	Rw1G002940 Rw1G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	349, 422
AcsI	RAATTY	1 cut(s)	226
AcuI	CTGAAG	1 cut(s)	9
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	3 cut(s)	192, 226, 325
AluBI	AGCT	6 cut(s)	185, 287, 372, 430, 472, 491
AluI	AGCT	6 cut(s)	185, 287, 372, 430, 472, 491
Alw26I	GTCTC	1 cut(s)	93
ApeKI	GCWGC	5 cut(s)	157, 217, 261, 284, 287
ApoI	RAATTY	1 cut(s)	226
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	2 cut(s)	265, 492
BauI	CACGAG	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	104
BbvCI	CCTCAGC	1 cut(s)	426
BbvI	GCAGC	5 cut(s)	169, 204, 273, 274, 296
BccI	CCATC	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	93
BisI	GCNGC	5 cut(s)	158, 218, 262, 285, 288
BlsI	GCNGC	5 cut(s)	159, 219, 263, 286, 289
Bme1390I	CCNGG	1 cut(s)	108
BmiI	GGNNCC	1 cut(s)	420
BmrFI	CCNGG	1 cut(s)	108
BmsI	GCATC	1 cut(s)	199
BpiI	GAAGAC	1 cut(s)	104
Bpu10I	CCTNAGC	1 cut(s)	426
BpuMI	CCSGG	1 cut(s)	108
BsaAI	YACGTR	1 cut(s)	311
BsaWI	WCCGGW	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse3DI	GCAATG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	242
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMI	GCAATG	1 cut(s)	297
BseMII	CTCAG	2 cut(s)	288, 440
BseRI	GAGGAG	3 cut(s)	59, 62, 65
BseXI	GCAGC	5 cut(s)	169, 204, 273, 274, 296
BsiSI	CCGG	3 cut(s)	41, 107, 161
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	93
BsmI	GAATGC	1 cut(s)	331
BspACI	CCGC	2 cut(s)	349, 422
BspCNI	CTCAG	2 cut(s)	289, 439
BspLI	GGNNCC	1 cut(s)	420
BsrDI	GCAATG	1 cut(s)	297
BssSI	CACGAG	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	276
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	1 cut(s)	277
BstBAI	YACGTR	1 cut(s)	311
BstC8I	GCNNGC	2 cut(s)	374, 489
BstDEI	CTNAG	3 cut(s)	297, 426, 431
BstF5I	GGATG	1 cut(s)	242
BstMAI	GTCTC	1 cut(s)	93
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 421
BstSCI	CCNGG	1 cut(s)	106
BstV1I	GCAGC	5 cut(s)	169, 204, 273, 274, 296
BstV2I	GAAGAC	1 cut(s)	104
BtsCI	GGATG	1 cut(s)	242
Cac8I	GCNNGC	2 cut(s)	374, 489
Csp6I	GTAC	1 cut(s)	38
CviJI	RGCY	9 cut(s)	79, 160, 185, 287, 296, 372, 430, 472, 491
CviKI_1	RGCY	9 cut(s)	79, 160, 185, 287, 296, 372, 430, 472, 491
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	3 cut(s)	297, 426, 431
Eam1104I	CTCTTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	277
EciI	GGCGGA	1 cut(s)	411
Eco57I	CTGAAG	1 cut(s)	9
EcoRI	GAATTC	1 cut(s)	226
EcoT22I	ATGCAT	1 cut(s)	331
FaiI	YATR	1 cut(s)	251
FauI	CCCGC	1 cut(s)	356
Fnu4HI	GCNGC	5 cut(s)	158, 218, 262, 285, 288
FokI	GGATG	1 cut(s)	229
Fsp4HI	GCNGC	5 cut(s)	158, 218, 262, 285, 288
GluI	GCNGC	5 cut(s)	158, 218, 262, 285, 288
HapII	CCGG	3 cut(s)	41, 107, 161
HinfI	GANTC	1 cut(s)	118
HpaII	CCGG	3 cut(s)	41, 107, 161
HphI	GGTGA	2 cut(s)	265, 492
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	2 cut(s)	28, 117
Hpy188III	TCNNGA	3 cut(s)	206, 223, 395
Hpy8I	GTNNAC	1 cut(s)	13
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	2 cut(s)	198, 432
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	3 cut(s)	284, 290, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 421
HpyF3I	CTNAG	3 cut(s)	297, 426, 431
HpySE526I	ACGT	1 cut(s)	310
LmnI	GCTCC	2 cut(s)	190, 441
Lsp1109I	GCAGC	5 cut(s)	169, 204, 273, 274, 296
LweI	GCATC	1 cut(s)	199
MaeII	ACGT	1 cut(s)	310
MaeIII	GTNAC	1 cut(s)	451
MboII	GAAGA	4 cut(s)	15, 104, 264, 470
MluCI	AATT	1 cut(s)	226
MlyI	GAGTC	1 cut(s)	112
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	9 cut(s)	37, 40, 43, 46, 135, 349, 359, 387, 435
Mph1103I	ATGCAT	1 cut(s)	331
MspA1I	CMGCKG	1 cut(s)	287
MspI	CCGG	3 cut(s)	41, 107, 161
MspR9I	CCNGG	1 cut(s)	108
Mva1269I	GAATGC	1 cut(s)	331
MwoI	GCNNNNNNNGC	2 cut(s)	293, 421
NciI	CCSGG	1 cut(s)	108
NlaIV	GGNNCC	1 cut(s)	420
NsiI	ATGCAT	1 cut(s)	331
PctI	GAATGC	1 cut(s)	331
PkrI	GCNGC	5 cut(s)	159, 219, 263, 286, 289
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
Ppu21I	YACGTR	1 cut(s)	311
PspN4I	GGNNCC	1 cut(s)	420
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
SatI	GCNGC	5 cut(s)	158, 218, 262, 285, 288
SchI	GAGTC	1 cut(s)	112
ScrFI	CCNGG	1 cut(s)	108
SetI	ASST	9 cut(s)	57, 187, 289, 313, 370, 374, 432, 474, 493
SfaNI	GCATC	1 cut(s)	199
Sse9I	AATT	1 cut(s)	226
SsiI	CCGC	2 cut(s)	349, 422
StyD4I	CCNGG	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	403
TaiI	ACGT	1 cut(s)	313
TasI	AATT	1 cut(s)	226
TseI	GCWGC	5 cut(s)	157, 217, 261, 284, 287
TspDTI	ATGAA	2 cut(s)	168, 294
XapI	RAATTY	1 cut(s)	226
Zsp2I	ATGCAT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.