Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003892

Physical Location & Seq

Genomic Coordinates Reverse (-)

2381441 .. 2382118

Gene Structure 678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g01990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCTGTTCCTCCTTCTCCTAATAATAGAAACATGGAACTGTTGCCCGATCAGAGGAGGGCTCGTAAGAAGATGTATCAAGATCGAAAGATGAACATATTCAAAAAGGGTGAGGAGCTTTCTATACTATGTGGTATTGATGTCCTTGTGATCCTGTTCCAACCAACTGACAAGAGTAGTACTGCTCAGCCTGCTGCAGAGACTTGGCCTAAAAATCCCACAGAAGTCAAACGCATTATCCGCAGATACAAGGAGAAAACTGCCTCCACTCATGCTTCATCTCATAGGACAAGCCCCCTGACAATCAGAGGTACTACTAGTACTCCATCTTCATCTTCATCTTCACCTCAAAGTGTACCAGAGAAGAGAAAATACATAAACTTAGATTTGTCTTTGTCCGGTTTTTCTGATTCACGAACAAAAGTGTTGAAAGAGGACAAGGGTAAGAAGAATTTGCATGTTCAAGATGATGATGAATACATAAATCCACAAGAGGCCTGCATGGATATGCAGTTCAAGCATCCAACAATCTGGGATCATGCTGGCAGAGGTGAATTATACGACCACGGGGCATTGATGTTTGAATATGATGATCATCAGGCAAAACTTGCTTCATTGGAAGCTAAGCAAAAAGCTATAACAGAAAGAATTGCTTCTTTGCAGGCAGCTCATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

226

Amino Acids

25.46

Weight (kDa)

9.21

Isoelectric Point (pI)

56.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	19 - 59	4.4e-11	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13470
fragaria_vesca	FvH4_7g01990 FvH4_7g02000 FvH4_7g02110
malus_domestica	MD02G1298000.v1.1 MD07G1026200.v1.1
prunus_persica	Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1
pyrus_communis	pycom02g25090
rosa_chinensis	RchiOBHm_Chr1g0318991
rosa_laevigata	RLG00000030489 RLG00000030510 RLG00000030511
rosa_multiflora	Rmu_sc0003503.1_g000002 Rmu_sc0005870.1_g000006 Rmu_sc0006626.1_g000002 Rmu_sc0006626.1_g000003
rosa_roxburghii	Rroxscaffold_4G00328700
rosa_rugosa	Rorug01G0026300 Rorug01G0027300
rosa_samantha	Rh1AG038100 Rh1AG038200 Rh1AG039600 Rh1AG263000 Rh1BG034400 Rh1BG034500 Rh1BG036400 Rh1CG037100 Rh1DG032900 Rh1DG033000
rosa_wichuraiana	Rw1G002940 Rw1G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	241
AclWI	GGATC	2 cut(s)	145, 543
AcsI	RAATTY	1 cut(s)	451
AfaI	GTAC	4 cut(s)	181, 313, 322, 357
AfiI	CCNNNNNNNGG	1 cut(s)	54
AgsI	TTSAA	5 cut(s)	103, 430, 464, 517, 584
AhlI	ACTAGT	1 cut(s)	317
AloI	GAACNNNNNNTCC	2 cut(s)	497, 529
AluBI	AGCT	4 cut(s)	118, 623, 635, 668
AluI	AGCT	4 cut(s)	118, 623, 635, 668
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	2 cut(s)	145, 543
AoxI	GGCC	2 cut(s)	206, 495
ApeKI	GCWGC	2 cut(s)	194, 665
ApoI	RAATTY	1 cut(s)	451
Asp700I	GAANNNNTTC	2 cut(s)	98, 652
AsuHPI	GGTGA	3 cut(s)	122, 336, 563
BanII	GRGCYC	1 cut(s)	64
BarI	GAAGNNNNNNTAC	4 cut(s)	313, 345, 356, 388
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	1 cut(s)	334
BclI	TGATCA	1 cut(s)	592
BcoDI	GTCTC	1 cut(s)	194
BcuI	ACTAGT	1 cut(s)	317
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	195
BisI	GCNGC	2 cut(s)	195, 666
BlpI	GCTNAGC	2 cut(s)	186, 624
BlsI	GCNGC	2 cut(s)	196, 667
BmcAI	AGTACT	2 cut(s)	181, 322
BmsI	GCATC	1 cut(s)	529
BplI	GAGNNNNNCTC	2 cut(s)	46, 78
Bpu1102I	GCTNAGC	2 cut(s)	186, 624
BsaBI	GATNNNNATC	1 cut(s)	594
BsaJI	CCNNGG	1 cut(s)	565
BsaWI	WCCGGW	1 cut(s)	398
BsaXI	ACNNNNNCTCC	4 cut(s)	49, 79, 307, 337
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse8I	GATNNNNATC	1 cut(s)	594
BseDI	CCNNGG	1 cut(s)	565
BseGI	GGATG	1 cut(s)	520
BseJI	GATNNNNATC	1 cut(s)	594
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	200
BseRI	GAGGAG	2 cut(s)	70, 128
BseXI	GCAGC	1 cut(s)	181
BshFI	GGCC	2 cut(s)	208, 497
BsiSI	CCGG	1 cut(s)	399
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	208, 497
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	5 cut(s)	49, 82, 150, 535, 592
Bsp1720I	GCTNAGC	2 cut(s)	186, 624
BspACI	CCGC	1 cut(s)	241
BspANI	GGCC	2 cut(s)	208, 497
BspCNI	CTCAG	1 cut(s)	199
BspMAI	CTGCAG	1 cut(s)	199
BspPI	GGATC	2 cut(s)	145, 543
BssECI	CCNNGG	1 cut(s)	565
BssMI	GATC	5 cut(s)	49, 82, 150, 535, 592
Bst4CI	ACNGT	1 cut(s)	42
Bst6I	CTCTTC	1 cut(s)	359
BstAPI	GCANNNNNTGC	2 cut(s)	608, 671
BstC8I	GCNNGC	4 cut(s)	192, 499, 544, 663
BstDEI	CTNAG	3 cut(s)	186, 382, 624
BstDSI	CCRYGG	1 cut(s)	565
BstF5I	GGATG	1 cut(s)	520
BstKTI	GATC	5 cut(s)	52, 85, 153, 538, 595
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	5 cut(s)	49, 82, 150, 535, 592
BstMWI	GCNNNNNNNGC	5 cut(s)	191, 240, 517, 608, 671
BstNSI	RCATGY	1 cut(s)	461
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	181
BstXI	CCANNNNNNTGG	1 cut(s)	531
BsuRI	GGCC	2 cut(s)	208, 497
BtgI	CCRYGG	1 cut(s)	565
BtsCI	GGATG	1 cut(s)	520
Cac8I	GCNNGC	4 cut(s)	192, 499, 544, 663
Csp6I	GTAC	4 cut(s)	180, 312, 321, 356
CviAII	CATG	6 cut(s)	34, 272, 458, 502, 539, 671
CviQI	GTAC	4 cut(s)	180, 312, 321, 356
DdeI	CTNAG	3 cut(s)	186, 382, 624
DpnI	GATC	5 cut(s)	51, 84, 152, 537, 594
DpnII	GATC	5 cut(s)	49, 82, 150, 535, 592
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
Eco147I	AGGCCT	1 cut(s)	497
Eco24I	GRGCYC	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	64
FaeI	CATG	6 cut(s)	37, 275, 461, 505, 542, 674
FalI	AAGNNNNNCTT	2 cut(s)	637, 669
FatI	CATG	6 cut(s)	33, 271, 457, 501, 538, 670
FbaI	TGATCA	1 cut(s)	592
Fnu4HI	GCNGC	2 cut(s)	195, 666
FokI	GGATG	1 cut(s)	507
FriOI	GRGCYC	1 cut(s)	64
Fsp4HI	GCNGC	2 cut(s)	195, 666
FspBI	CTAG	1 cut(s)	318
GluI	GCNGC	2 cut(s)	195, 666
HaeIII	GGCC	2 cut(s)	208, 497
HapII	CCGG	1 cut(s)	399
Hin1II	CATG	6 cut(s)	37, 275, 461, 505, 542, 674
HinfI	GANTC	1 cut(s)	410
HpaII	CCGG	1 cut(s)	399
HphI	GGTGA	3 cut(s)	122, 336, 563
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	3 cut(s)	54, 308, 409
Hpy188III	TCNNGA	3 cut(s)	80, 414, 464
Hpy8I	GTNNAC	1 cut(s)	356
HpyAV	CCTTC	1 cut(s)	24
HpyCH4III	ACNGT	1 cut(s)	42
HpyCH4V	TGCA	5 cut(s)	197, 457, 501, 511, 661
HpyF10VI	GCNNNNNNNGC	5 cut(s)	191, 240, 517, 608, 671
HpyF3I	CTNAG	3 cut(s)	186, 382, 624
Hsp92II	CATG	6 cut(s)	37, 275, 461, 505, 542, 674
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	5 cut(s)	49, 82, 150, 535, 592
LmnI	GCTCC	1 cut(s)	115
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	1 cut(s)	529
MaeI	CTAG	1 cut(s)	318
MalI	GATC	5 cut(s)	51, 84, 152, 537, 594
MboI	GATC	5 cut(s)	49, 82, 150, 535, 592
MboII	GAAGA	6 cut(s)	82, 321, 327, 333, 376, 460
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	3 cut(s)	451, 554, 648
MmeI	TCCRAC	2 cut(s)	184, 548
MroXI	GAANNNNTTC	2 cut(s)	98, 652
MseI	TTAA	1 cut(s)	676
MslI	CAYNNNNRTG	1 cut(s)	506
MspI	CCGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	5 cut(s)	191, 240, 517, 608, 671
NdeII	GATC	5 cut(s)	49, 82, 150, 535, 592
NlaIII	CATG	6 cut(s)	37, 275, 461, 505, 542, 674
NspI	RCATGY	1 cut(s)	461
PceI	AGGCCT	1 cut(s)	497
PdmI	GAANNNNTTC	2 cut(s)	98, 652
PfeI	GAWTC	1 cut(s)	410
PkrI	GCNGC	2 cut(s)	196, 667
PstI	CTGCAG	1 cut(s)	199
RsaI	GTAC	4 cut(s)	181, 313, 322, 357
RsaNI	GTAC	4 cut(s)	180, 312, 321, 356
RseI	CAYNNNNRTG	1 cut(s)	506
SaqAI	TTAA	1 cut(s)	676
SatI	GCNGC	2 cut(s)	195, 666
Sau3AI	GATC	5 cut(s)	49, 82, 150, 535, 592
ScaI	AGTACT	2 cut(s)	181, 322
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	7 cut(s)	120, 313, 349, 553, 625, 637, 670
SfaNI	GCATC	1 cut(s)	529
SfcI	CTRYAG	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	506
SpeI	ACTAGT	1 cut(s)	317
Sse9I	AATT	3 cut(s)	451, 554, 648
SseBI	AGGCCT	1 cut(s)	497
SsiI	CCGC	1 cut(s)	241
SspMI	CTAG	1 cut(s)	318
StuI	AGGCCT	1 cut(s)	497
TaaI	ACNGT	1 cut(s)	42
TaqI	TCGA	1 cut(s)	85
TasI	AATT	3 cut(s)	451, 554, 648
TatI	WGTACW	2 cut(s)	179, 320
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	1 cut(s)	676
Tru9I	TTAA	1 cut(s)	676
TseI	GCWGC	2 cut(s)	194, 665
TspDTI	ATGAA	6 cut(s)	107, 267, 321, 327, 489, 603
XapI	RAATTY	1 cut(s)	451
XceI	RCATGY	1 cut(s)	461
XmnI	GAANNNNTTC	2 cut(s)	98, 652
XspI	CTAG	1 cut(s)	318
ZrmI	AGTACT	2 cut(s)	181, 322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.