Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005870.1

Orthogroup ID

OG0003892

Physical Location & Seq

Genomic Coordinates Forward (+)

22379 .. 23032

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005870.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atggaactgttacctgatcaaaggagggctcgcaagaagatgtatcgagatcgaaagatgaatatatttaagaagggggaggagctatccatactttgtggtattgatgtcgctgtgattctgttccaaccagctgacaagagtactactgctcaaccagctgcagagacttggcctaaagatcctacagaaatcaagcgcattatccgcagatacaaggcaaagcctacctccagtcatgcttcatcttctagcacaagcccgccggtaatcaaagatactactagtactccatcttcatctccatgtccatgtccatctccatctcaaagtctactagggaagagaaattacttaaacttggatttgtctttgtctggtttttatgactcgcgaatgaaaattttaaaagaggacaaaggtaagaagaaagtacgtgctgataataatgagaatataaattccgaagaggggatgggtatgcagtatgagtttcagacaagatggaatgctgctggaaaagatgaattatacaaggacgacaacgaattgaggattggatatgatgatcatgaggcaaagcttgcttcactggaagctaagcgagaagctataacaaagaggattgcttcattggaggcgaattatgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

217

Amino Acids

24.55

Weight (kDa)

9.19

Isoelectric Point (pI)

60.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13470
fragaria_vesca	FvH4_7g01990 FvH4_7g02000 FvH4_7g02110
malus_domestica	MD02G1298000.v1.1 MD07G1026200.v1.1
prunus_persica	Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1
pyrus_communis	pycom02g25090
rosa_chinensis	RchiOBHm_Chr1g0318991
rosa_laevigata	RLG00000030489 RLG00000030510 RLG00000030511
rosa_multiflora	Rmu_sc0003503.1_g000002 Rmu_sc0005870.1_g000006 Rmu_sc0006626.1_g000002 Rmu_sc0006626.1_g000003
rosa_roxburghii	Rroxscaffold_4G00328700
rosa_rugosa	Rorug01G0026300 Rorug01G0027300
rosa_samantha	Rh1AG038100 Rh1AG038200 Rh1AG039600 Rh1AG263000 Rh1BG034400 Rh1BG034500 Rh1BG036400 Rh1CG037100 Rh1DG032900 Rh1DG033000
rosa_wichuraiana	Rw1G002940 Rw1G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	334
AccII	CGCG	1 cut(s)	394
AciI	CCGC	2 cut(s)	208, 263
AclWI	GGATC	1 cut(s)	176
AcsI	RAATTY	2 cut(s)	402, 460
AfaI	GTAC	3 cut(s)	145, 289, 435
AfiI	CCNNNNNNNGG	1 cut(s)	471
AhlI	ACTAGT	1 cut(s)	284
AjuI	GAANNNNNNNTTGG	2 cut(s)	540, 572
AluBI	AGCT	6 cut(s)	85, 134, 161, 583, 599, 611
AluI	AGCT	6 cut(s)	85, 134, 161, 583, 599, 611
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	161, 512
ApoI	RAATTY	2 cut(s)	402, 460
AspLEI	GCGC	1 cut(s)	201
BanII	GRGCYC	1 cut(s)	31
BarI	GAAGNNNNNNTAC	4 cut(s)	280, 312, 335, 367
BbvI	GCAGC	2 cut(s)	148, 499
BccI	CCATC	5 cut(s)	301, 325, 331, 469, 498
BclI	TGATCA	2 cut(s)	16, 568
BcoDI	GTCTC	1 cut(s)	161
BcuI	ACTAGT	1 cut(s)	284
BfaI	CTAG	3 cut(s)	252, 285, 338
BfmI	CTRYAG	2 cut(s)	162, 186
BisI	GCNGC	2 cut(s)	162, 513
BlpI	GCTNAGC	1 cut(s)	600
BlsI	GCNGC	2 cut(s)	163, 514
BmcAI	AGTACT	2 cut(s)	145, 289
BpmI	CTGGAG	1 cut(s)	217
Bpu1102I	GCTNAGC	1 cut(s)	600
BsaAI	YACGTR	1 cut(s)	437
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bsc4I	CCNNNNNNNGG	1 cut(s)	471
Bse118I	RCCGGY	1 cut(s)	265
Bse1I	ACTGG	2 cut(s)	234, 597
BseGI	GGATG	1 cut(s)	480
BseLI	CCNNNNNNNGG	1 cut(s)	471
BseNI	ACTGG	2 cut(s)	234, 597
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	2 cut(s)	148, 499
Bsh1236I	CGCG	1 cut(s)	394
BshFI	GGCC	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	266
BslI	CCNNNNNNNGG	1 cut(s)	471
BsmAI	GTCTC	1 cut(s)	161
BsmI	GAATGC	1 cut(s)	514
BsnI	GGCC	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	4 cut(s)	16, 49, 181, 568
Bsp1720I	GCTNAGC	1 cut(s)	600
Bsp68I	TCGCGA	1 cut(s)	394
BspACI	CCGC	2 cut(s)	208, 263
BspANI	GGCC	1 cut(s)	175
BspFNI	CGCG	1 cut(s)	394
BspHI	TCATGA	1 cut(s)	571
BspMAI	CTGCAG	1 cut(s)	166
BspPI	GGATC	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	265
BsrI	ACTGG	2 cut(s)	234, 597
BssAI	RCCGGY	1 cut(s)	265
BssMI	GATC	4 cut(s)	16, 49, 181, 568
Bst4CI	ACNGT	1 cut(s)	9
Bst6I	CTCTTC	2 cut(s)	338, 462
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstBAI	YACGTR	1 cut(s)	437
BstC8I	GCNNGC	3 cut(s)	31, 263, 585
BstDEI	CTNAG	1 cut(s)	600
BstF5I	GGATG	1 cut(s)	480
BstFNI	CGCG	1 cut(s)	394
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	4 cut(s)	19, 52, 184, 571
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	4 cut(s)	16, 49, 181, 568
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 207, 584
BstSFI	CTRYAG	2 cut(s)	162, 186
BstUI	CGCG	1 cut(s)	394
BstV1I	GCAGC	2 cut(s)	148, 499
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	480
BtsIMutI	CAGTG	1 cut(s)	590
BtuMI	TCGCGA	1 cut(s)	394
Cac8I	GCNNGC	3 cut(s)	31, 263, 585
CciI	TCATGA	1 cut(s)	571
CfoI	GCGC	1 cut(s)	201
Cfr10I	RCCGGY	1 cut(s)	265
Csp6I	GTAC	3 cut(s)	144, 288, 434
CviAII	CATG	4 cut(s)	239, 306, 312, 572
CviQI	GTAC	3 cut(s)	144, 288, 434
DdeI	CTNAG	1 cut(s)	600
DpnI	GATC	4 cut(s)	18, 51, 183, 570
DpnII	GATC	4 cut(s)	16, 49, 181, 568
DraI	TTTAAA	1 cut(s)	408
Eam1104I	CTCTTC	2 cut(s)	338, 462
EarI	CTCTTC	2 cut(s)	338, 462
Eco24I	GRGCYC	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	31
FaeI	CATG	4 cut(s)	242, 309, 315, 575
FatI	CATG	4 cut(s)	238, 305, 311, 571
FauI	CCCGC	1 cut(s)	270
FbaI	TGATCA	2 cut(s)	16, 568
FblI	GTMKAC	1 cut(s)	334
Fnu4HI	GCNGC	2 cut(s)	162, 513
FokI	GGATG	1 cut(s)	487
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	2 cut(s)	162, 513
FspBI	CTAG	3 cut(s)	252, 285, 338
GlaI	GCGC	1 cut(s)	200
GluI	GCNGC	2 cut(s)	162, 513
GsuI	CTGGAG	1 cut(s)	217
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	1 cut(s)	266
HhaI	GCGC	1 cut(s)	201
Hin1II	CATG	4 cut(s)	242, 309, 315, 575
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	2 cut(s)	118, 389
HpaII	CCGG	1 cut(s)	266
Hpy166II	GTNNAC	1 cut(s)	335
Hpy188I	TCNGA	2 cut(s)	466, 498
Hpy188III	TCNNGA	3 cut(s)	47, 393, 572
Hpy8I	GTNNAC	1 cut(s)	335
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	9
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	2 cut(s)	164, 484
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 207, 584
HpyF3I	CTNAG	1 cut(s)	600
HpySE526I	ACGT	1 cut(s)	436
Hsp92II	CATG	4 cut(s)	242, 309, 315, 575
HspAI	GCGC	1 cut(s)	199
Ksp22I	TGATCA	2 cut(s)	16, 568
Kzo9I	GATC	4 cut(s)	16, 49, 181, 568
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	8 cut(s)	27, 144, 171, 247, 279, 363, 501, 578
Lsp1109I	GCAGC	2 cut(s)	148, 499
MaeI	CTAG	3 cut(s)	252, 285, 338
MaeII	ACGT	1 cut(s)	436
MaeIII	GTNAC	1 cut(s)	9
MalI	GATC	4 cut(s)	18, 51, 183, 570
MboI	GATC	4 cut(s)	16, 49, 181, 568
MboII	GAAGA	6 cut(s)	49, 240, 288, 355, 439, 479
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	6 cut(s)	349, 402, 460, 527, 548, 643
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	9 cut(s)	18, 73, 241, 406, 463, 546, 568, 615, 631
MseI	TTAA	4 cut(s)	69, 356, 407, 652
MslI	CAYNNNNRTG	2 cut(s)	304, 310
MspA1I	CMGCKG	2 cut(s)	134, 161
MspI	CCGG	1 cut(s)	266
Mva1269I	GAATGC	1 cut(s)	514
MvnI	CGCG	1 cut(s)	394
MwoI	GCNNNNNNNGC	3 cut(s)	158, 207, 584
NdeII	GATC	4 cut(s)	16, 49, 181, 568
NlaIII	CATG	4 cut(s)	242, 309, 315, 575
NruI	TCGCGA	1 cut(s)	394
PagI	TCATGA	1 cut(s)	571
PctI	GAATGC	1 cut(s)	514
PfeI	GAWTC	1 cut(s)	118
PkrI	GCNGC	2 cut(s)	163, 514
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
Ppu21I	YACGTR	1 cut(s)	437
PstI	CTGCAG	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	181
PvuII	CAGCTG	2 cut(s)	134, 161
RruI	TCGCGA	1 cut(s)	394
RsaI	GTAC	3 cut(s)	145, 289, 435
RsaNI	GTAC	3 cut(s)	144, 288, 434
RseI	CAYNNNNRTG	2 cut(s)	304, 310
SaqAI	TTAA	4 cut(s)	69, 356, 407, 652
SatI	GCNGC	2 cut(s)	162, 513
Sau3AI	GATC	4 cut(s)	16, 49, 181, 568
ScaI	AGTACT	2 cut(s)	145, 289
SchI	GAGTC	1 cut(s)	383
SduI	GDGCHC	1 cut(s)	31
SfcI	CTRYAG	2 cut(s)	162, 186
SmiMI	CAYNNNNRTG	2 cut(s)	304, 310
SpeI	ACTAGT	1 cut(s)	284
Sse9I	AATT	6 cut(s)	349, 402, 460, 527, 548, 643
SsiI	CCGC	2 cut(s)	208, 263
SspMI	CTAG	3 cut(s)	252, 285, 338
TaaI	ACNGT	1 cut(s)	9
TaiI	ACGT	1 cut(s)	439
TaqI	TCGA	2 cut(s)	46, 52
TasI	AATT	6 cut(s)	349, 402, 460, 527, 548, 643
TatI	WGTACW	2 cut(s)	143, 287
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	4 cut(s)	69, 356, 407, 652
Tru9I	TTAA	4 cut(s)	69, 356, 407, 652
TscAI	CASTG	1 cut(s)	597
TseI	GCWGC	2 cut(s)	161, 512
TspDTI	ATGAA	6 cut(s)	74, 234, 288, 413, 540, 621
TspRI	CASTG	1 cut(s)	597
XapI	RAATTY	2 cut(s)	402, 460
XmiI	GTMKAC	1 cut(s)	334
XspI	CTAG	3 cut(s)	252, 285, 338
ZrmI	AGTACT	2 cut(s)	145, 289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.