Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003892

Physical Location & Seq

Genomic Coordinates Forward (+)

6966416 .. 6967102

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG039600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCTCTTCTTCCTTCTCCTAGTAGTAGAAACATGGAACTGTTACCTGATCAAAGGAGGGCTCGCAAGAAGATGTATCGAGATCGAAAGATGAATATATTTAAGAAGGGGGAGGAGCTATCCATACTTTGTGGTATTGATGTCGCTGTGATTCTGTTCCAACCAGCTGAGAAGAGTACTACTACTCAACCAGCTGCAGAGACTTGGCCTAAAGATCCTACAGAAGTCAAGCGCATTGTCCGGAGATACAAGGCAAAGCCTGCCTTCACTCTTGCTTCATCTCCCAGCAAAAGCCCGCCGGCAATTAAAGATACTACCAGTAGTACTTCTTCATCTTCATCTCTATCTCCATCTCCATCTAGAAGTGTACTAGGGAAGAGAAATTTCCTAAACTTAGATTTGTCTTTGTCTGGTTTTTATGATTCGCAAACGAAAATTTTAAAAGATGACAAAGGTAAGAAGAAGTTGCATGCTGATAATGATGAGAACATAAATTCCGAAGAGGAGATGGGGATGCAGTACGAGTTTCACACAAGATGGAATGCTGCTGGAAAAGATGAATTATACAAGGACGACGACAAATTGAGGATTGGATATGATGATCATGAGGCAAAGCTTGCTTCACTGGAAGCTAAGGGAGAAGCTATAACAAAGAGGATTGCTTCATTGGAGGCGACTTATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

228

Amino Acids

25.6

Weight (kDa)

9.2

Isoelectric Point (pI)

63.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	19 - 61	4e-11	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13470
fragaria_vesca	FvH4_7g01990 FvH4_7g02000 FvH4_7g02110
malus_domestica	MD02G1298000.v1.1 MD07G1026200.v1.1
prunus_persica	Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1
pyrus_communis	pycom02g25090
rosa_chinensis	RchiOBHm_Chr1g0318991
rosa_laevigata	RLG00000030489 RLG00000030510 RLG00000030511
rosa_multiflora	Rmu_sc0003503.1_g000002 Rmu_sc0005870.1_g000006 Rmu_sc0006626.1_g000002 Rmu_sc0006626.1_g000003
rosa_roxburghii	Rroxscaffold_4G00328700
rosa_rugosa	Rorug01G0026300 Rorug01G0027300
rosa_samantha	Rh1AG038100 Rh1AG038200 Rh1AG039600 Rh1AG263000 Rh1BG034400 Rh1BG034500 Rh1BG036400 Rh1CG037100 Rh1DG032900 Rh1DG033000
rosa_wichuraiana	Rw1G002940 Rw1G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	240
AciI	CCGC	1 cut(s)	296
AclWI	GGATC	1 cut(s)	209
AcsI	RAATTY	3 cut(s)	382, 435, 493
AfaI	GTAC	4 cut(s)	178, 325, 369, 521
AloI	GAACNNNNNNTCC	2 cut(s)	479, 511
AluBI	AGCT	6 cut(s)	118, 167, 194, 616, 632, 644
AluI	AGCT	6 cut(s)	118, 167, 194, 616, 632, 644
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	1 cut(s)	209
Aor13HI	TCCGGA	1 cut(s)	240
AoxI	GGCC	1 cut(s)	206
ApeKI	GCWGC	2 cut(s)	194, 545
ApoI	RAATTY	3 cut(s)	382, 435, 493
AspLEI	GCGC	1 cut(s)	234
BanII	GRGCYC	1 cut(s)	64
BarI	GAAGNNNNNNTAC	2 cut(s)	313, 345
BbvI	GCAGC	2 cut(s)	181, 532
BccI	CCATC	4 cut(s)	358, 364, 502, 531
BclI	TGATCA	2 cut(s)	49, 601
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	3 cut(s)	21, 360, 371
BfmI	CTRYAG	2 cut(s)	195, 219
BisI	GCNGC	2 cut(s)	195, 546
BlsI	GCNGC	2 cut(s)	196, 547
BmcAI	AGTACT	2 cut(s)	178, 325
BmsI	GCATC	1 cut(s)	504
Bpu10I	CCTNAGC	1 cut(s)	633
BsaWI	WCCGGW	1 cut(s)	240
Bse118I	RCCGGY	1 cut(s)	298
Bse1I	ACTGG	2 cut(s)	318, 630
BseAI	TCCGGA	1 cut(s)	240
BseGI	GGATG	1 cut(s)	519
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	2 cut(s)	318, 630
BseRI	GAGGAG	2 cut(s)	128, 518
BseXI	GCAGC	2 cut(s)	181, 532
BseYI	CCCAGC	1 cut(s)	284
BshFI	GGCC	1 cut(s)	208
BsiSI	CCGG	2 cut(s)	241, 299
BsmAI	GTCTC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp13I	TCCGGA	1 cut(s)	240
Bsp143I	GATC	4 cut(s)	49, 82, 214, 601
BspACI	CCGC	1 cut(s)	296
BspANI	GGCC	1 cut(s)	208
BspCNI	CTCAG	1 cut(s)	160
BspEI	TCCGGA	1 cut(s)	240
BspHI	TCATGA	1 cut(s)	604
BspMAI	CTGCAG	1 cut(s)	199
BspPI	GGATC	1 cut(s)	209
BspQI	GCTCTTC	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	298
BsrI	ACTGG	2 cut(s)	318, 630
BssAI	RCCGGY	1 cut(s)	298
BssMI	GATC	4 cut(s)	49, 82, 214, 601
Bst4CI	ACNGT	1 cut(s)	42
Bst6I	CTCTTC	4 cut(s)	12, 167, 371, 495
BstAPI	GCANNNNNTGC	2 cut(s)	260, 617
BstC8I	GCNNGC	6 cut(s)	64, 261, 296, 300, 471, 618
BstDEI	CTNAG	3 cut(s)	168, 394, 633
BstF5I	GGATG	1 cut(s)	519
BstHHI	GCGC	1 cut(s)	234
BstKTI	GATC	4 cut(s)	52, 85, 217, 604
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	4 cut(s)	49, 82, 214, 601
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 617
BstNSI	RCATGY	1 cut(s)	473
BstSFI	CTRYAG	2 cut(s)	195, 219
BstV1I	GCAGC	2 cut(s)	181, 532
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	519
BtsIMutI	CAGTG	1 cut(s)	623
Cac8I	GCNNGC	6 cut(s)	64, 261, 296, 300, 471, 618
CciI	TCATGA	1 cut(s)	604
CfoI	GCGC	1 cut(s)	234
Cfr10I	RCCGGY	1 cut(s)	298
Csp6I	GTAC	4 cut(s)	177, 324, 368, 520
CviAII	CATG	3 cut(s)	34, 470, 605
CviQI	GTAC	4 cut(s)	177, 324, 368, 520
DdeI	CTNAG	3 cut(s)	168, 394, 633
DpnI	GATC	4 cut(s)	51, 84, 216, 603
DpnII	GATC	4 cut(s)	49, 82, 214, 601
DraI	TTTAAA	1 cut(s)	441
Eam1104I	CTCTTC	4 cut(s)	12, 167, 371, 495
EarI	CTCTTC	4 cut(s)	12, 167, 371, 495
Eco24I	GRGCYC	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	64
FaeI	CATG	3 cut(s)	37, 473, 608
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FatI	CATG	3 cut(s)	33, 469, 604
FauI	CCCGC	1 cut(s)	303
FbaI	TGATCA	2 cut(s)	49, 601
Fnu4HI	GCNGC	2 cut(s)	195, 546
FokI	GGATG	1 cut(s)	526
FriOI	GRGCYC	1 cut(s)	64
Fsp4HI	GCNGC	2 cut(s)	195, 546
FspBI	CTAG	3 cut(s)	21, 360, 371
GlaI	GCGC	1 cut(s)	233
GluI	GCNGC	2 cut(s)	195, 546
GsaI	CCCAGC	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	208
HapII	CCGG	2 cut(s)	241, 299
HhaI	GCGC	1 cut(s)	234
Hin1II	CATG	3 cut(s)	37, 473, 608
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HindIII	AAGCTT	1 cut(s)	614
HinfI	GANTC	2 cut(s)	151, 422
HpaII	CCGG	2 cut(s)	241, 299
Hpy166II	GTNNAC	1 cut(s)	368
Hpy188I	TCNGA	1 cut(s)	499
Hpy188III	TCNNGA	4 cut(s)	80, 241, 360, 605
Hpy8I	GTNNAC	1 cut(s)	368
Hpy99I	CGWCG	1 cut(s)	578
HpyAV	CCTTC	3 cut(s)	24, 100, 274
HpyCH4III	ACNGT	1 cut(s)	42
HpyCH4V	TGCA	3 cut(s)	197, 469, 517
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 617
HpyF3I	CTNAG	3 cut(s)	168, 394, 633
Hsp92II	CATG	3 cut(s)	37, 473, 608
HspAI	GCGC	1 cut(s)	232
Kpn2I	TCCGGA	1 cut(s)	240
KroI	GCCGGC	1 cut(s)	298
KroNI	GCCGGC	1 cut(s)	300
Ksp22I	TGATCA	2 cut(s)	49, 601
Kzo9I	GATC	4 cut(s)	49, 82, 214, 601
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	115
Lsp1109I	GCAGC	2 cut(s)	181, 532
LweI	GCATC	1 cut(s)	504
MaeI	CTAG	3 cut(s)	21, 360, 371
MaeIII	GTNAC	1 cut(s)	42
MalI	GATC	4 cut(s)	51, 84, 216, 603
MboI	GATC	4 cut(s)	49, 82, 214, 601
MboII	GAAGA	7 cut(s)	82, 184, 321, 327, 388, 472, 512
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	6 cut(s)	303, 382, 435, 493, 560, 581
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	7 cut(s)	51, 106, 496, 579, 601, 648, 664
MroI	TCCGGA	1 cut(s)	240
MroNI	GCCGGC	1 cut(s)	298
MseI	TTAA	4 cut(s)	102, 306, 440, 685
MspA1I	CMGCKG	2 cut(s)	167, 194
MspI	CCGG	2 cut(s)	241, 299
Mva1269I	GAATGC	1 cut(s)	547
MwoI	GCNNNNNNNGC	2 cut(s)	260, 617
NaeI	GCCGGC	1 cut(s)	300
NdeII	GATC	4 cut(s)	49, 82, 214, 601
NgoMIV	GCCGGC	1 cut(s)	298
NlaIII	CATG	3 cut(s)	37, 473, 608
NspI	RCATGY	1 cut(s)	473
PaeI	GCATGC	1 cut(s)	473
PagI	TCATGA	1 cut(s)	604
PciSI	GCTCTTC	1 cut(s)	12
PctI	GAATGC	1 cut(s)	547
PdiI	GCCGGC	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	151, 422
PkrI	GCNGC	2 cut(s)	196, 547
PspFI	CCCAGC	1 cut(s)	284
PstI	CTGCAG	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	214
PvuII	CAGCTG	2 cut(s)	167, 194
RsaI	GTAC	4 cut(s)	178, 325, 369, 521
RsaNI	GTAC	4 cut(s)	177, 324, 368, 520
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	4 cut(s)	102, 306, 440, 685
SatI	GCNGC	2 cut(s)	195, 546
Sau3AI	GATC	4 cut(s)	49, 82, 214, 601
ScaI	AGTACT	2 cut(s)	178, 325
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	8 cut(s)	49, 120, 169, 196, 457, 618, 634, 646
SfaNI	GCATC	1 cut(s)	504
SfcI	CTRYAG	2 cut(s)	195, 219
SphI	GCATGC	1 cut(s)	473
Sse9I	AATT	6 cut(s)	303, 382, 435, 493, 560, 581
SsiI	CCGC	1 cut(s)	296
SspMI	CTAG	3 cut(s)	21, 360, 371
TaaI	ACNGT	1 cut(s)	42
TaqI	TCGA	2 cut(s)	79, 85
TasI	AATT	6 cut(s)	303, 382, 435, 493, 560, 581
TatI	WGTACW	3 cut(s)	176, 323, 367
TfiI	GAWTC	2 cut(s)	151, 422
Tru1I	TTAA	4 cut(s)	102, 306, 440, 685
Tru9I	TTAA	4 cut(s)	102, 306, 440, 685
TscAI	CASTG	1 cut(s)	630
TseI	GCWGC	2 cut(s)	194, 545
TspDTI	ATGAA	6 cut(s)	107, 267, 321, 327, 573, 654
TspRI	CASTG	1 cut(s)	630
XapI	RAATTY	3 cut(s)	382, 435, 493
XbaI	TCTAGA	1 cut(s)	359
XceI	RCATGY	1 cut(s)	473
XspI	CTAG	3 cut(s)	21, 360, 371
ZrmI	AGTACT	2 cut(s)	178, 325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.