Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003892

Physical Location & Seq

Genomic Coordinates Forward (+)

62692197 .. 62692850

Gene Structure 654 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030511

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGAACTGTTACCCGATCAGAGGAGGGCTCGTAAGAAGATGTATCAAGATCGAAAGATGAATATATTTAAAAAGGGGAAGGAGCTTTCCATACTTTGTGGTACCGATGTCCTTGTGATCCTGTTCCAACCAACTGACAAGGGTACTACTAGTCAGCCAGCTGCAGAGACTTGGCCTAAAGATCCCACAGAAGTCGAACGCATTATCCGCAGATACAAGGCAAAGCTTGCAGCCTCCACTCATGCTTCATCTCCTAGCACAAGCGTGCCGGCAATCAAAGATAAGTCTACTAGTACTCCTCCATCTTCATCTCCATCTCCATCTCGAAGTGTACCAGAGAAGAGAAAATACATGAACTTAGATTTGTCTTTGTCCGGTTCTTATGATTCCCGAACGAAAAAGTTGAAAGAGGACAAGGGTAAGAAGAAGTTGCATGCTTGGGATGATGATGAGAATATAAATTCACAAGAGGCCGGCATGGAGATGCAGTTCAAGTATCCAACAATCCGGGATCACGCTGGAAGAGAAAATTTATACTACGACGGGGAATTGATGATTGGATATGATGATCATCAAGCAAAACTTGCTTCATTGGAAACCAAGCAAAAAGCTATAACAAAAAGAATTGCTTCATTGGAGGCAACTCATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

218

Amino Acids

24.53

Weight (kDa)

9.43

Isoelectric Point (pI)

55.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	8 - 48	8.1e-11	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13470
fragaria_vesca	FvH4_7g01990 FvH4_7g02000 FvH4_7g02110
malus_domestica	MD02G1298000.v1.1 MD07G1026200.v1.1
prunus_persica	Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1
pyrus_communis	pycom02g25090
rosa_chinensis	RchiOBHm_Chr1g0318991
rosa_laevigata	RLG00000030489 RLG00000030510 RLG00000030511
rosa_multiflora	Rmu_sc0003503.1_g000002 Rmu_sc0005870.1_g000006 Rmu_sc0006626.1_g000002 Rmu_sc0006626.1_g000003
rosa_roxburghii	Rroxscaffold_4G00328700
rosa_rugosa	Rorug01G0026300 Rorug01G0027300
rosa_samantha	Rh1AG038100 Rh1AG038200 Rh1AG039600 Rh1AG263000 Rh1BG034400 Rh1BG034500 Rh1BG036400 Rh1CG037100 Rh1DG032900 Rh1DG033000
rosa_wichuraiana	Rw1G002940 Rw1G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	101
AccB1I	GGYRCC	1 cut(s)	101
AccI	GTMKAC	1 cut(s)	287
AciI	CCGC	1 cut(s)	208
AclWI	GGATC	3 cut(s)	112, 176, 519
AcsI	RAATTY	2 cut(s)	460, 529
AfaI	GTAC	4 cut(s)	103, 145, 295, 333
AfiI	CCNNNNNNNGG	1 cut(s)	21
AgsI	TTSAA	2 cut(s)	406, 493
AhlI	ACTAGT	2 cut(s)	149, 290
AjuI	GAANNNNNNNTTGG	2 cut(s)	540, 572
AleI	CACNNNNGTG	1 cut(s)	263
AloI	GAACNNNNNNTCC	4 cut(s)	189, 221, 473, 505
AluBI	AGCT	4 cut(s)	85, 161, 226, 611
AluI	AGCT	4 cut(s)	85, 161, 226, 611
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	3 cut(s)	112, 176, 519
AoxI	GGCC	2 cut(s)	173, 471
ApeKI	GCWGC	2 cut(s)	161, 230
ApoI	RAATTY	2 cut(s)	460, 529
Asp700I	GAANNNNTTC	1 cut(s)	628
Asp718I	GGTACC	1 cut(s)	101
AsuC2I	CCSGG	1 cut(s)	509
BaeI	ACNNNNGTAYC	2 cut(s)	93, 126
BanI	GGYRCC	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	31
BarI	GAAGNNNNNNTAC	2 cut(s)	332, 364
BbvI	GCAGC	2 cut(s)	148, 242
BccI	CCATC	3 cut(s)	310, 322, 328
BciVI	GTATCC	1 cut(s)	507
BclI	TGATCA	1 cut(s)	568
BcnI	CCSGG	1 cut(s)	509
BcoDI	GTCTC	1 cut(s)	161
BcuI	ACTAGT	2 cut(s)	149, 290
BfaI	CTAG	3 cut(s)	150, 255, 291
BfmI	CTRYAG	1 cut(s)	162
BfuI	GTATCC	1 cut(s)	507
BisI	GCNGC	2 cut(s)	162, 231
BlsI	GCNGC	2 cut(s)	163, 232
BmcAI	AGTACT	1 cut(s)	295
Bme1390I	CCNGG	1 cut(s)	509
BmiI	GGNNCC	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	509
BmsI	GCATC	1 cut(s)	474
BplI	GAGNNNNNCTC	2 cut(s)	13, 45
BpuMI	CCSGG	1 cut(s)	509
BsaBI	GATNNNNATC	1 cut(s)	570
BsaWI	WCCGGW	1 cut(s)	374
BsaXI	ACNNNNNCTCC	6 cut(s)	16, 46, 280, 310, 473, 503
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
Bse118I	RCCGGY	2 cut(s)	268, 473
Bse8I	GATNNNNATC	1 cut(s)	570
BseGI	GGATG	1 cut(s)	448
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseRI	GAGGAG	2 cut(s)	37, 288
BseXI	GCAGC	2 cut(s)	148, 242
BshFI	GGCC	2 cut(s)	175, 473
BshNI	GGYRCC	1 cut(s)	101
BsiSI	CCGG	4 cut(s)	269, 375, 474, 508
BslI	CCNNNNNNNGG	1 cut(s)	21
BsmAI	GTCTC	1 cut(s)	161
BsnI	GGCC	2 cut(s)	175, 473
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	6 cut(s)	16, 49, 117, 181, 511, 568
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	2 cut(s)	175, 473
BspLI	GGNNCC	1 cut(s)	103
BspMAI	CTGCAG	1 cut(s)	166
BspPI	GGATC	3 cut(s)	112, 176, 519
BspT107I	GGYRCC	1 cut(s)	101
BsrFI	RCCGGY	2 cut(s)	268, 473
BssAI	RCCGGY	2 cut(s)	268, 473
BssMI	GATC	6 cut(s)	16, 49, 117, 181, 511, 568
Bst4CI	ACNGT	1 cut(s)	9
Bst6I	CTCTTC	2 cut(s)	335, 517
BstAPI	GCANNNNNTGC	3 cut(s)	227, 584, 647
BstC8I	GCNNGC	6 cut(s)	159, 228, 266, 270, 435, 475
BstDEI	CTNAG	1 cut(s)	358
BstF5I	GGATG	1 cut(s)	448
BstKTI	GATC	6 cut(s)	19, 52, 120, 184, 514, 571
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	6 cut(s)	16, 49, 117, 181, 511, 568
BstMWI	GCNNNNNNNGC	4 cut(s)	207, 227, 584, 647
BstNSI	RCATGY	1 cut(s)	437
BstSCI	CCNGG	1 cut(s)	507
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	2 cut(s)	148, 242
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuI	GTATCC	1 cut(s)	507
BsuRI	GGCC	2 cut(s)	175, 473
BtsCI	GGATG	1 cut(s)	448
Cac8I	GCNNGC	6 cut(s)	159, 228, 266, 270, 435, 475
Cfr10I	RCCGGY	2 cut(s)	268, 473
Csp6I	GTAC	4 cut(s)	102, 144, 294, 332
CviAII	CATG	5 cut(s)	242, 352, 434, 478, 647
CviJI	RGCY	9 cut(s)	29, 85, 157, 161, 175, 226, 233, 473, 611
CviKI_1	RGCY	9 cut(s)	29, 85, 157, 161, 175, 226, 233, 473, 611
CviQI	GTAC	4 cut(s)	102, 144, 294, 332
DdeI	CTNAG	1 cut(s)	358
DpnI	GATC	6 cut(s)	18, 51, 119, 183, 513, 570
DpnII	GATC	6 cut(s)	16, 49, 117, 181, 511, 568
DraI	TTTAAA	1 cut(s)	70
Eam1104I	CTCTTC	2 cut(s)	335, 517
EarI	CTCTTC	2 cut(s)	335, 517
Eco24I	GRGCYC	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	31
FaeI	CATG	5 cut(s)	245, 355, 437, 481, 650
FalI	AAGNNNNNCTT	4 cut(s)	567, 599, 613, 645
FatI	CATG	5 cut(s)	241, 351, 433, 477, 646
FbaI	TGATCA	1 cut(s)	568
FblI	GTMKAC	1 cut(s)	287
Fnu4HI	GCNGC	2 cut(s)	162, 231
FokI	GGATG	1 cut(s)	455
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	2 cut(s)	162, 231
FspBI	CTAG	3 cut(s)	150, 255, 291
GluI	GCNGC	2 cut(s)	162, 231
HaeIII	GGCC	2 cut(s)	175, 473
HapII	CCGG	4 cut(s)	269, 375, 474, 508
Hin1II	CATG	5 cut(s)	245, 355, 437, 481, 650
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	1 cut(s)	386
HpaII	CCGG	4 cut(s)	269, 375, 474, 508
Hpy166II	GTNNAC	2 cut(s)	288, 332
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	3 cut(s)	47, 324, 390
Hpy8I	GTNNAC	2 cut(s)	288, 332
Hpy99I	CGWCG	1 cut(s)	545
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	9
HpyCH4V	TGCA	4 cut(s)	164, 230, 433, 487
HpyF10VI	GCNNNNNNNGC	4 cut(s)	207, 227, 584, 647
HpyF3I	CTNAG	1 cut(s)	358
Hsp92II	CATG	5 cut(s)	245, 355, 437, 481, 650
KpnI	GGTACC	1 cut(s)	105
KroI	GCCGGC	2 cut(s)	268, 473
KroNI	GCCGGC	2 cut(s)	270, 475
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	6 cut(s)	16, 49, 117, 181, 511, 568
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	8 cut(s)	134, 171, 282, 348, 388, 487, 504, 521
Lsp1109I	GCAGC	2 cut(s)	148, 242
LweI	GCATC	1 cut(s)	474
MaeI	CTAG	3 cut(s)	150, 255, 291
MaeIII	GTNAC	1 cut(s)	9
MalI	GATC	6 cut(s)	18, 51, 119, 183, 513, 570
MboI	GATC	6 cut(s)	16, 49, 117, 181, 511, 568
MboII	GAAGA	5 cut(s)	49, 297, 352, 436, 534
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	4 cut(s)	460, 529, 548, 624
MmeI	TCCRAC	2 cut(s)	151, 524
MnlI	CCTC	7 cut(s)	15, 18, 244, 309, 403, 463, 631
MroNI	GCCGGC	2 cut(s)	268, 473
MroXI	GAANNNNTTC	1 cut(s)	628
MseI	TTAA	2 cut(s)	69, 652
MslI	CAYNNNNRTG	2 cut(s)	263, 482
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	4 cut(s)	269, 375, 474, 508
MspR9I	CCNGG	1 cut(s)	509
MwoI	GCNNNNNNNGC	4 cut(s)	207, 227, 584, 647
NaeI	GCCGGC	2 cut(s)	270, 475
NciI	CCSGG	1 cut(s)	509
NdeII	GATC	6 cut(s)	16, 49, 117, 181, 511, 568
NgoMIV	GCCGGC	2 cut(s)	268, 473
NlaIII	CATG	5 cut(s)	245, 355, 437, 481, 650
NlaIV	GGNNCC	1 cut(s)	103
NspI	RCATGY	1 cut(s)	437
OliI	CACNNNNGTG	1 cut(s)	263
PaeI	GCATGC	1 cut(s)	437
PdiI	GCCGGC	2 cut(s)	270, 475
PdmI	GAANNNNTTC	1 cut(s)	628
PfeI	GAWTC	1 cut(s)	386
PfoI	TCCNGGA	1 cut(s)	507
PkrI	GCNGC	2 cut(s)	163, 232
PspN4I	GGNNCC	1 cut(s)	103
PstI	CTGCAG	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	4 cut(s)	103, 145, 295, 333
RsaNI	GTAC	4 cut(s)	102, 144, 294, 332
RseI	CAYNNNNRTG	2 cut(s)	263, 482
SaqAI	TTAA	2 cut(s)	69, 652
SatI	GCNGC	2 cut(s)	162, 231
Sau3AI	GATC	6 cut(s)	16, 49, 117, 181, 511, 568
ScaI	AGTACT	1 cut(s)	295
ScrFI	CCNGG	1 cut(s)	509
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	4 cut(s)	87, 163, 228, 613
SfaNI	GCATC	1 cut(s)	474
SfcI	CTRYAG	1 cut(s)	162
SmiMI	CAYNNNNRTG	2 cut(s)	263, 482
SpeI	ACTAGT	2 cut(s)	149, 290
SphI	GCATGC	1 cut(s)	437
Sse9I	AATT	4 cut(s)	460, 529, 548, 624
SsiI	CCGC	1 cut(s)	208
SspMI	CTAG	3 cut(s)	150, 255, 291
StyD4I	CCNGG	1 cut(s)	507
TaaI	ACNGT	1 cut(s)	9
TaqI	TCGA	3 cut(s)	52, 195, 325
TasI	AATT	4 cut(s)	460, 529, 548, 624
TatI	WGTACW	1 cut(s)	293
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	2 cut(s)	69, 652
Tru9I	TTAA	2 cut(s)	69, 652
TseI	GCWGC	2 cut(s)	161, 230
TspDTI	ATGAA	6 cut(s)	74, 237, 297, 368, 579, 621
XapI	RAATTY	2 cut(s)	460, 529
XceI	RCATGY	1 cut(s)	437
XmiI	GTMKAC	1 cut(s)	287
XmnI	GAANNNNTTC	1 cut(s)	628
XspI	CTAG	3 cut(s)	150, 255, 291
ZrmI	AGTACT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.