Rh1AG038100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003892
Physical Location & Seq
Reverse (-)
6659394 .. 6659966
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG038100.1

Sequence Viewer

Length: 303 bp
ATGAACTTAGATTTGTCTTTGTCCGGTTCTTATGATTCCCAAACGAAAAAGTTGAAAGAGGACAAGGGTAAGAAGAAGTTGCATGCTTGGGATGATGATGAGAATATAAATTCACAAGAGGCCGGCATGGAGATGCAGCTCAAGTATCCAACAATCTGGGATCATGCTGGAAGAGAAAATTTATACGACGACGGGGAATTGATGGTTGGATATGATGATCATCAATCAAAACTTGCTTCATTGGAAGCTAAGCAAAAAGCTATAACAAAAAGAATTGCTTCATTGGAGGCAACTCATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.34

Weight (kDa)

5.28

Isoelectric Point (pI)

32.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 168
AcsI RAATTY 2 cut(s) 109, 178
AgsI TTSAA 1 cut(s) 55
AjuI GAANNNNNNNTTGG 2 cut(s) 189, 221
AluBI AGCT 3 cut(s) 139, 248, 260
AluI AGCT 3 cut(s) 139, 248, 260
AlwI GGATC 1 cut(s) 168
AoxI GGCC 1 cut(s) 120
ApeKI GCWGC 1 cut(s) 136
ApoI RAATTY 2 cut(s) 109, 178
Asp700I GAANNNNTTC 1 cut(s) 277
BbvI GCAGC 1 cut(s) 148
BccI CCATC 1 cut(s) 196
BciVI GTATCC 1 cut(s) 156
BclI TGATCA 1 cut(s) 217
BfuI GTATCC 1 cut(s) 156
BisI GCNGC 1 cut(s) 137
BlpI GCTNAGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 138
BmsI GCATC 1 cut(s) 123
Bpu1102I GCTNAGC 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 125
BsaBI GATNNNNATC 1 cut(s) 219
BsaWI WCCGGW 1 cut(s) 23
Bse118I RCCGGY 1 cut(s) 122
Bse8I GATNNNNATC 1 cut(s) 219
BseGI GGATG 1 cut(s) 97
BseJI GATNNNNATC 1 cut(s) 219
BseXI GCAGC 1 cut(s) 148
BshFI GGCC 1 cut(s) 122
BsiSI CCGG 2 cut(s) 24, 123
BsnI GGCC 1 cut(s) 122
Bsp143I GATC 2 cut(s) 160, 217
Bsp1720I GCTNAGC 1 cut(s) 249
BspANI GGCC 1 cut(s) 122
BspPI GGATC 1 cut(s) 168
BsrFI RCCGGY 1 cut(s) 122
BssAI RCCGGY 1 cut(s) 122
BssMI GATC 2 cut(s) 160, 217
Bst6I CTCTTC 1 cut(s) 166
BstAPI GCANNNNNTGC 1 cut(s) 296
BstC8I GCNNGC 2 cut(s) 84, 124
BstDEI CTNAG 2 cut(s) 7, 249
BstF5I GGATG 1 cut(s) 97
BstKTI GATC 2 cut(s) 163, 220
BstMBI GATC 2 cut(s) 160, 217
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNSI RCATGY 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 148
BstXI CCANNNNNNTGG 1 cut(s) 156
BsuI GTATCC 1 cut(s) 156
BsuRI GGCC 1 cut(s) 122
BtsCI GGATG 1 cut(s) 97
Cac8I GCNNGC 2 cut(s) 84, 124
Cfr10I RCCGGY 1 cut(s) 122
CviAII CATG 4 cut(s) 83, 127, 164, 296
CviJI RGCY 4 cut(s) 122, 139, 248, 260
CviKI_1 RGCY 4 cut(s) 122, 139, 248, 260
DdeI CTNAG 2 cut(s) 7, 249
DpnI GATC 2 cut(s) 162, 219
DpnII GATC 2 cut(s) 160, 217
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
FaeI CATG 4 cut(s) 86, 130, 167, 299
FaiI YATR 9 cut(s) 33, 84, 107, 128, 165, 184, 213, 263, 297
FalI AAGNNNNNCTT 2 cut(s) 262, 294
FatI CATG 4 cut(s) 82, 126, 163, 295
FbaI TGATCA 1 cut(s) 217
Fnu4HI GCNGC 1 cut(s) 137
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 1 cut(s) 137
GluI GCNGC 1 cut(s) 137
HaeIII GGCC 1 cut(s) 122
HapII CCGG 2 cut(s) 24, 123
Hin1II CATG 4 cut(s) 86, 130, 167, 299
HinfI GANTC 1 cut(s) 35
HpaII CCGG 2 cut(s) 24, 123
Hpy99I CGWCG 2 cut(s) 191, 194
HpyCH4V TGCA 2 cut(s) 82, 136
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 2 cut(s) 7, 249
Hsp92II CATG 4 cut(s) 86, 130, 167, 299
KroI GCCGGC 1 cut(s) 122
KroNI GCCGGC 1 cut(s) 124
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 2 cut(s) 160, 217
LpnPI CCDG 4 cut(s) 37, 136, 142, 153
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 1 cut(s) 123
MalI GATC 2 cut(s) 162, 219
MboI GATC 2 cut(s) 160, 217
MboII GAAGA 2 cut(s) 85, 183
MluCI AATT 4 cut(s) 109, 178, 197, 273
MmeI TCCRAC 2 cut(s) 173, 187
MnlI CCTC 3 cut(s) 52, 112, 280
MroNI GCCGGC 1 cut(s) 122
MroXI GAANNNNTTC 1 cut(s) 277
MseI TTAA 1 cut(s) 301
MslI CAYNNNNRTG 1 cut(s) 131
MspI CCGG 2 cut(s) 24, 123
MwoI GCNNNNNNNGC 1 cut(s) 296
NaeI GCCGGC 1 cut(s) 124
NdeII GATC 2 cut(s) 160, 217
NgoMIV GCCGGC 1 cut(s) 122
NlaIII CATG 4 cut(s) 86, 130, 167, 299
NspI RCATGY 1 cut(s) 86
PaeI GCATGC 1 cut(s) 86
PdiI GCCGGC 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 277
PfeI GAWTC 1 cut(s) 35
PkrI GCNGC 1 cut(s) 138
RseI CAYNNNNRTG 1 cut(s) 131
SaqAI TTAA 1 cut(s) 301
SatI GCNGC 1 cut(s) 137
Sau3AI GATC 2 cut(s) 160, 217
SetI ASST 3 cut(s) 141, 250, 262
SfaNI GCATC 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 131
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
SphI GCATGC 1 cut(s) 86
Sse9I AATT 4 cut(s) 109, 178, 197, 273
TasI AATT 4 cut(s) 109, 178, 197, 273
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 1 cut(s) 301
Tru9I TTAA 1 cut(s) 301
TseI GCWGC 1 cut(s) 136
TspDTI ATGAA 3 cut(s) 17, 228, 270
XapI RAATTY 2 cut(s) 109, 178
XceI RCATGY 1 cut(s) 86
XmnI GAANNNNTTC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.