Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003892

Physical Location & Seq

Genomic Coordinates Reverse (-)

4691913 .. 4693021

Gene Structure 1109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG034400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCTCTTCCTCTTTTTCCTATTAATAGAAACATGGAACCGTTACCCGATCAGAGGAGGGCTCGTAAGAAGATGTATCGAGATCGAAAGATGAATATATTTAAAAAGGGGGAGGAGCTTTCCATACTTTGTGGTACCGATGTCCTTGTGATCCTGTTCCAACCAACTGACAAGGGTACTACTAGTCAGCCAGCTGCAGAGACTTGGCCTAAAGATCCCACCGAAGTCGAACGCATTATCCGCAGATACAAGGCAAAGCTTGCAGCCTCCACACATGCTTCATCTCCTAGCACAAGCGTGCCGGCAATCAAAGATAAGTCTACTAGTACTCCTCCATCTTCATCTCGAAGTGTACCAGAGAAGAGAAAATACATGAACTTAGATTTGTCTTTGTCCGGTTCTTATGATTCCCAAACGAAAAAGGACAAGGGTAAGAAGAAGTTGCATGCTCAGGATGATGATGAGAATATAAATTCACAAGAGGCCGGCATGGAGATGCAGCTCAAGTATCCAACAATGTGGGATCATGCTGGAAGAGAAAATTTATATGACGACGGGGAATTGATGATTGGATATGATGATCATCAAGCAAAACTTGCTTCATTGGAAGCTAAGCAAAAAGCTATAACAAAAAGAATTGCTTCATTGGAGGCAACTCATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

221

Amino Acids

24.92

Weight (kDa)

9.21

Isoelectric Point (pI)

53.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	19 - 59	1.6e-10	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13470
fragaria_vesca	FvH4_7g01990 FvH4_7g02000 FvH4_7g02110
malus_domestica	MD02G1298000.v1.1 MD07G1026200.v1.1
prunus_persica	Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1
pyrus_communis	pycom02g25090
rosa_chinensis	RchiOBHm_Chr1g0318991
rosa_laevigata	RLG00000030489 RLG00000030510 RLG00000030511
rosa_multiflora	Rmu_sc0003503.1_g000002 Rmu_sc0005870.1_g000006 Rmu_sc0006626.1_g000002 Rmu_sc0006626.1_g000003
rosa_roxburghii	Rroxscaffold_4G00328700
rosa_rugosa	Rorug01G0026300 Rorug01G0027300
rosa_samantha	Rh1AG038100 Rh1AG038200 Rh1AG039600 Rh1AG263000 Rh1BG034400 Rh1BG034500 Rh1BG036400 Rh1CG037100 Rh1DG032900 Rh1DG033000
rosa_wichuraiana	Rw1G002940 Rw1G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	134
AccB1I	GGYRCC	1 cut(s)	134
AccI	GTMKAC	1 cut(s)	320
AciI	CCGC	1 cut(s)	241
AclWI	GGATC	3 cut(s)	145, 209, 531
AcsI	RAATTY	2 cut(s)	472, 541
AfaI	GTAC	4 cut(s)	136, 178, 328, 354
AfiI	CCNNNNNNNGG	1 cut(s)	54
AhlI	ACTAGT	2 cut(s)	182, 323
AjuI	GAANNNNNNNTTGG	2 cut(s)	552, 584
AleI	CACNNNNGTG	1 cut(s)	296
AloI	GAACNNNNNNTCC	2 cut(s)	222, 254
AluBI	AGCT	6 cut(s)	118, 194, 259, 502, 611, 623
AluI	AGCT	6 cut(s)	118, 194, 259, 502, 611, 623
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	3 cut(s)	145, 209, 531
AoxI	GGCC	2 cut(s)	206, 483
ApeKI	GCWGC	3 cut(s)	194, 263, 499
ApoI	RAATTY	2 cut(s)	472, 541
AseI	ATTAAT	1 cut(s)	24
Asp700I	GAANNNNTTC	1 cut(s)	640
Asp718I	GGTACC	1 cut(s)	134
BaeI	ACNNNNGTAYC	2 cut(s)	126, 159
BanI	GGYRCC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	64
BarI	GAAGNNNNNNTAC	2 cut(s)	353, 385
BbvI	GCAGC	3 cut(s)	181, 275, 511
BccI	CCATC	1 cut(s)	343
BciVI	GTATCC	1 cut(s)	519
BclI	TGATCA	1 cut(s)	580
BcoDI	GTCTC	1 cut(s)	194
BcuI	ACTAGT	2 cut(s)	182, 323
BfaI	CTAG	3 cut(s)	183, 288, 324
BfmI	CTRYAG	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	519
BisI	GCNGC	3 cut(s)	195, 264, 500
BlpI	GCTNAGC	1 cut(s)	612
BlsI	GCNGC	3 cut(s)	196, 265, 501
BmcAI	AGTACT	1 cut(s)	328
BmiI	GGNNCC	2 cut(s)	39, 136
BmsI	GCATC	1 cut(s)	486
BplI	GAGNNNNNCTC	2 cut(s)	46, 78
Bpu10I	CCTNAGC	1 cut(s)	450
Bpu1102I	GCTNAGC	1 cut(s)	612
BpuEI	CTTGAG	1 cut(s)	488
BsaBI	GATNNNNATC	1 cut(s)	582
BsaWI	WCCGGW	1 cut(s)	395
BsaXI	ACNNNNNCTCC	4 cut(s)	49, 79, 313, 343
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse118I	RCCGGY	2 cut(s)	301, 485
Bse8I	GATNNNNATC	1 cut(s)	582
BseGI	GGATG	1 cut(s)	460
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	464
BseRI	GAGGAG	3 cut(s)	70, 128, 321
BseXI	GCAGC	3 cut(s)	181, 275, 511
BshFI	GGCC	2 cut(s)	208, 485
BshNI	GGYRCC	1 cut(s)	134
BsiSI	CCGG	3 cut(s)	302, 396, 486
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	208, 485
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	6 cut(s)	49, 82, 150, 214, 523, 580
Bsp1720I	GCTNAGC	1 cut(s)	612
BspACI	CCGC	1 cut(s)	241
BspANI	GGCC	2 cut(s)	208, 485
BspCNI	CTCAG	1 cut(s)	463
BspLI	GGNNCC	2 cut(s)	39, 136
BspMAI	CTGCAG	1 cut(s)	199
BspPI	GGATC	3 cut(s)	145, 209, 531
BspQI	GCTCTTC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	134
BsrFI	RCCGGY	2 cut(s)	301, 485
BssAI	RCCGGY	2 cut(s)	301, 485
BssMI	GATC	6 cut(s)	49, 82, 150, 214, 523, 580
Bst4CI	ACNGT	1 cut(s)	42
Bst6I	CTCTTC	3 cut(s)	12, 356, 529
BstAPI	GCANNNNNTGC	3 cut(s)	260, 596, 659
BstC8I	GCNNGC	6 cut(s)	192, 261, 299, 303, 447, 487
BstDEI	CTNAG	3 cut(s)	379, 450, 612
BstF5I	GGATG	1 cut(s)	460
BstKTI	GATC	6 cut(s)	52, 85, 153, 217, 526, 583
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	6 cut(s)	49, 82, 150, 214, 523, 580
BstMWI	GCNNNNNNNGC	4 cut(s)	240, 260, 596, 659
BstNSI	RCATGY	2 cut(s)	278, 449
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	3 cut(s)	181, 275, 511
BstX2I	RGATCY	1 cut(s)	214
BstXI	CCANNNNNNTGG	1 cut(s)	519
BstYI	RGATCY	1 cut(s)	214
BsuI	GTATCC	1 cut(s)	519
BsuRI	GGCC	2 cut(s)	208, 485
BtsCI	GGATG	1 cut(s)	460
Cac8I	GCNNGC	6 cut(s)	192, 261, 299, 303, 447, 487
Cfr10I	RCCGGY	2 cut(s)	301, 485
Csp6I	GTAC	4 cut(s)	135, 177, 327, 353
CviAII	CATG	7 cut(s)	34, 275, 373, 446, 490, 527, 659
CviQI	GTAC	4 cut(s)	135, 177, 327, 353
DdeI	CTNAG	3 cut(s)	379, 450, 612
DpnI	GATC	6 cut(s)	51, 84, 152, 216, 525, 582
DpnII	GATC	6 cut(s)	49, 82, 150, 214, 523, 580
DraI	TTTAAA	1 cut(s)	103
Eam1104I	CTCTTC	3 cut(s)	12, 356, 529
EarI	CTCTTC	3 cut(s)	12, 356, 529
Eco24I	GRGCYC	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	64
FaeI	CATG	7 cut(s)	37, 278, 376, 449, 493, 530, 662
FalI	AAGNNNNNCTT	4 cut(s)	579, 611, 625, 657
FatI	CATG	7 cut(s)	33, 274, 372, 445, 489, 526, 658
FbaI	TGATCA	1 cut(s)	580
FblI	GTMKAC	1 cut(s)	320
Fnu4HI	GCNGC	3 cut(s)	195, 264, 500
FokI	GGATG	1 cut(s)	467
FriOI	GRGCYC	1 cut(s)	64
Fsp4HI	GCNGC	3 cut(s)	195, 264, 500
FspBI	CTAG	3 cut(s)	183, 288, 324
GluI	GCNGC	3 cut(s)	195, 264, 500
HaeIII	GGCC	2 cut(s)	208, 485
HapII	CCGG	3 cut(s)	302, 396, 486
Hin1II	CATG	7 cut(s)	37, 278, 376, 449, 493, 530, 662
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	1 cut(s)	407
HpaII	CCGG	3 cut(s)	302, 396, 486
Hpy166II	GTNNAC	2 cut(s)	321, 353
Hpy188I	TCNGA	1 cut(s)	54
Hpy188III	TCNNGA	3 cut(s)	80, 345, 452
Hpy8I	GTNNAC	2 cut(s)	321, 353
Hpy99I	CGWCG	1 cut(s)	557
HpyCH4III	ACNGT	1 cut(s)	42
HpyCH4V	TGCA	4 cut(s)	197, 263, 445, 499
HpyF10VI	GCNNNNNNNGC	4 cut(s)	240, 260, 596, 659
HpyF3I	CTNAG	3 cut(s)	379, 450, 612
Hsp92II	CATG	7 cut(s)	37, 278, 376, 449, 493, 530, 662
KpnI	GGTACC	1 cut(s)	138
KroI	GCCGGC	2 cut(s)	301, 485
KroNI	GCCGGC	2 cut(s)	303, 487
Ksp22I	TGATCA	1 cut(s)	580
Kzo9I	GATC	6 cut(s)	49, 82, 150, 214, 523, 580
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	8 cut(s)	167, 204, 315, 369, 409, 437, 499, 516
Lsp1109I	GCAGC	3 cut(s)	181, 275, 511
LweI	GCATC	1 cut(s)	486
MaeI	CTAG	3 cut(s)	183, 288, 324
MaeIII	GTNAC	1 cut(s)	42
MalI	GATC	6 cut(s)	51, 84, 152, 216, 525, 582
MboI	GATC	6 cut(s)	49, 82, 150, 214, 523, 580
MboII	GAAGA	5 cut(s)	82, 330, 373, 448, 546
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	4 cut(s)	472, 541, 560, 636
MmeI	TCCRAC	2 cut(s)	184, 536
MnlI	CCTC	8 cut(s)	21, 48, 51, 106, 277, 342, 475, 643
MroNI	GCCGGC	2 cut(s)	301, 485
MroXI	GAANNNNTTC	1 cut(s)	640
MseI	TTAA	3 cut(s)	24, 102, 664
MslI	CAYNNNNRTG	2 cut(s)	296, 494
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	3 cut(s)	302, 396, 486
MwoI	GCNNNNNNNGC	4 cut(s)	240, 260, 596, 659
NaeI	GCCGGC	2 cut(s)	303, 487
NdeII	GATC	6 cut(s)	49, 82, 150, 214, 523, 580
NgoMIV	GCCGGC	2 cut(s)	301, 485
NlaIII	CATG	7 cut(s)	37, 278, 376, 449, 493, 530, 662
NlaIV	GGNNCC	2 cut(s)	39, 136
NspI	RCATGY	2 cut(s)	278, 449
OliI	CACNNNNGTG	1 cut(s)	296
PaeI	GCATGC	1 cut(s)	449
PciSI	GCTCTTC	1 cut(s)	12
PdiI	GCCGGC	2 cut(s)	303, 487
PdmI	GAANNNNTTC	1 cut(s)	640
PfeI	GAWTC	1 cut(s)	407
PkrI	GCNGC	3 cut(s)	196, 265, 501
PshBI	ATTAAT	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	39, 136
PstI	CTGCAG	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	214
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	4 cut(s)	136, 178, 328, 354
RsaNI	GTAC	4 cut(s)	135, 177, 327, 353
RseI	CAYNNNNRTG	2 cut(s)	296, 494
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	3 cut(s)	24, 102, 664
SatI	GCNGC	3 cut(s)	195, 264, 500
Sau3AI	GATC	6 cut(s)	49, 82, 150, 214, 523, 580
ScaI	AGTACT	1 cut(s)	328
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	6 cut(s)	120, 196, 261, 504, 613, 625
SfaNI	GCATC	1 cut(s)	486
SfcI	CTRYAG	1 cut(s)	195
SmiMI	CAYNNNNRTG	2 cut(s)	296, 494
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
SpeI	ACTAGT	2 cut(s)	182, 323
SphI	GCATGC	1 cut(s)	449
Sse9I	AATT	4 cut(s)	472, 541, 560, 636
SsiI	CCGC	1 cut(s)	241
SspMI	CTAG	3 cut(s)	183, 288, 324
TaaI	ACNGT	1 cut(s)	42
TaqI	TCGA	4 cut(s)	79, 85, 228, 346
TasI	AATT	4 cut(s)	472, 541, 560, 636
TatI	WGTACW	1 cut(s)	326
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	3 cut(s)	24, 102, 664
Tru9I	TTAA	3 cut(s)	24, 102, 664
TseI	GCWGC	3 cut(s)	194, 263, 499
TspDTI	ATGAA	6 cut(s)	107, 270, 330, 389, 591, 633
VspI	ATTAAT	1 cut(s)	24
XapI	RAATTY	2 cut(s)	472, 541
XceI	RCATGY	2 cut(s)	278, 449
XmiI	GTMKAC	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	640
XspI	CTAG	3 cut(s)	183, 288, 324
ZrmI	AGTACT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.