Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003892

Physical Location & Seq

Genomic Coordinates Forward (+)

4695975 .. 4700184

Gene Structure 4210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0027300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3780 bp

ATGGCTGGCGTAGTGGGTGGAGCTTTCCTCTCTGCTTCCCTTCAGGTCTTGTTCGATAGATTGGCTTCTCATCAAGTCGTTGACTTCATCCGCGGCAACAAGCTCAACGCTGGACTTCTCAGAAAGCTAGAAATCACTCTGCTTTCTGTCAATTCTGTGCTCAGTGATGCCGAGGACAAGCAGATAACCAATTCTGCTGTGAAAGAATGGCTTGATGAGCTTAGAGCTGCTGTCTATGATGCCGAGGACCTCTTGGCTAACTTCAGCTCTGAAGCTTTGGAGAAAGAGCTTCAAGAGGAAACTGAATCCGGAAGCAGCGGCGGAATTCAGGTAAAAAATATCAAATTGCATCTATTGAATGCATTGGATGAATGGTTGGAGCCCAAGATAGAGGAAATTGTTGAAAGACTAGAGTTTATTGCTAAGAAGAAGTATGTTCTTGGATTGAAAGAGGGTATCAAAGATGTAGCAGTAAGAAGATTGCCTGCAACTTCTTTGGTGGAGGAGTCTGGTGTGTATGGTAGGGATGAGGACAGAGAGTTCATTGTGAGGTTGTTGCTTTCAGATGGTATGGATGTTTGTGGCAATAAGATTTGTGTGATTCCCATAGTGGGTATGGGTGGAATTGGCAAGACCACCCTTGCTCAGCTTGTGTACAATGATGATGAAGTGAAGGGATACTTTGACCTCAAGGCATGGGTGTGTGTTTCGGAAGAATTTGATGTGTTGAGGATAACTAAAACAATTTTCGAGACAATCACTTCGGCGCCTTGTGGTATCACTGATCTGAATTTGCTTCAAGTTAAATTGAAAGATGAACTGATGGCTAAGAAGTTTCTGCTTGTTCTAGATGATGTTTGGAATGAGAACTACATTGATTGGGACGACTTGAAGAAACCTTTCTTGTCTGGGATTCATGGGAGTAAGATTGTTGTGACAACTCGCAGCGAAAATGTTGCAATGATCATGGGCACTGTTCCATCTCATCGTCTGAGACAATTGAGTGATGAAGATTGTTGGCTGTTGTTTGCAAAGCATGCCTTCAACAATGTAGAGTCAAGAGACCAACCAGTACTAGAAGAAATGGGGAGGGAAATTGTCAAAAAGTGCAAAGGGCTTGCATTAGCTGCAAAAATGCTTGGGGGTCTCCTGCGATCAAGACTAGATCCTGATGATTGGCATAAGATACTTACTAGTGAGATTTGGGATTCGTCAGAAGAAACTCATAACATTCTGCCAGCTCTAAGGTTGAGTTATGACCATCTCCCATCACATTTGAAGCAGTGCTTTTCTTATTGTTCAATATTCCCCAAAGACTATGAGTTTGGAAGGAACGAATTGGTCCTGTTGTGGATGGCTGCAGATCTTTTAGAACAACCCAAAAGAAAGAAGAGGATGGAAGAAGTGGGAGAAGAGTATTTCCATGATCTAATATCAAGGTCGCTTTTTCAGCAATCTAGTACAAATCAATCGCTTTTTGTCATGCATGACCTTGTTAATGATTTGGCTAAATATGTCTCTGGAGAATTTTGTCTTCGGTTGGAGGATGGTGTCTCAGATAAACTGGTAAGAAGGACTCGTCATTTGTCATTTTCTAGAACTGCACATGATGACTTTAAGAAATTTAAGATGTTGTATGAAGCTAAGTGCTTACGCACTTTCCTACCACTCAAATTTCAAGCACCGTATGGACGCTTTCATTTGTCTAACAAGGTAACCCATGATCTTTTACCAAGGCTACGCTGCTTGCGAGTTCTCTCTCTATCGCAGTACAAACTCAGCAAGTTGCCTGAATCAGTGGGAAATTTGAAGCATCTGCGGCATTTGGATCTCTCTCACACTGCAATTCAGAGGTTACCTGAGAGTGTAAGTACCTTGTACCAATTGAAAACATTGATACTGTCATGCTGTTTCTCTCTTACTGAGTTGCCAACAAACATGGGAAGACTAGTCAACTTGCGTCATCTGGACATTAGTCATACCAAGTTAAAAGAGATGCCATTACAGATGAGTAAAATGAAGAACCTACATACATTAACTGATTTTGTTCTTGGCAAAAATAGTGGTTGCAACATCAAGGAGTTGAGAGAGCTCCAGCAACTTCGCGGAACACTATCTATTTCAGGACTACAAAATGTAACCCATGATGTGTATGCTGTGGAGGCGAATATGAAGGCTAAGAAGTACCTTGATGAGCTAGTCTTGAAATGGGCTGGTCATGCTGATGATTCACAGTATGAAAGGAATGTACTTGAAAGTCTTAAACCTCATGTGAGTTTGAAAGAACTCAAAATTGAATATTTTGGGGGTACTAGATTTCCGGATTGGCTAGGAGACCATTCCTTCTCCAATATGGTATCTTTATGTCTTAAAGACTGTAAAGATTGCTGCTTCTTGCCACCACTTGGGCAGTTACCGTCTCTTAAAAAGCTTTGTATCTCTGGGTTGGACGGGGTAGGGAAGGTTGGTGCTGAGTTTTATGGTGATTGTGCAGTAAATAAGCCGTTTAAATCCCTAGAAATTTTGAAGTTAGAGGATATGTTTGAGTGGCAGGAGTGGTCCTGTTTTGGAGGTGACAATGTTGGTGGTGCTTTCCCTTGCCTTCAGGAGCTTTATCTACAACGTTGTCCCAAACTGACAGGAGGGTTACCCGACTATCTTCCATCTCTGACAACGCTATGGATTTTCAAATGCCAGCAGCTGGTGGCCTCCCTTCCAAGGGCTCCATCTATCCGTGATTTGAAGTTTGGATATTGTGATGGGTTGCAGTTAAAAGAATTGCCTTCTGAACTGCACTGGCTCAGAATTGAAGGATGCCATGTCCTGGAGTCTATACCTGGTCATGTGAAGGAAACAAATCCTTGTCTTCAGGAGTTATTTATCTCTGACTGTTCTTCTCTGGTGTCCTTTCCTAAGGATGGATTACCTGCTACACTGAAAGCCATTGAAATTGAGAACTGTGGGAGGTTAGAGATACCTGTTGACCACTACTATGCTTCCCTTGAAAGCTTGGCCATATGGAGTAGTTGCGATTCTTTAGAGTCCTTTCCATTGGAACTGTTCCCAAACTTGAACAATCTCAAAATTCGGAGCTGCAAAGGTCTAAAATCACTTTCTTTTTCAGGTGAACCAGACCATGAGCTCTTGGCTCTGAGTTTCTTGGAAATCTGGGATTGTCCTAGTTTGGTTTCATTCCCTGATAGAGGGTTGCCAACACCCAACCTGACCCAGTTTAAGGTAACAGATTGTATGAATTTGAGGTCGCTTCCTGAACTGATGGACAAACTTCTATCTCTTCAGTACTTAGAAATATCTGGATGTCCAGAACTTGAGTTGTTTCCTGATGGGGGTTTGCCCTCCAATTTGAGTTCACTCTACATTTGGGATTGCAACAAACTTGTCACACAGAGAGTGCAATGGAAGCTGAAAAATCTTGTTTCTCTCAGATGTTTGAGTATCATGGGTGGAAAGCGGGCTGATGTGCAGTGCTTTCCAGAAGAGGGGCTGCTGCCTACCTCTCTTACTTCTCTCTCCATCTGTGGACTTCCAAATCTAACATCACTTGATAAAGGGCTTCAACAACTCACAGCTCTTGAAAAATTGGAAATCAGCCACTGTCGTAAGCTCCAGTGCTTACCTGAAGAGGGGCTGACACCTCTTTCATATCTTTGCATCCGCAAATGTCCTTTGTTAAAACAAAGCTGCCAGAGGGATAGAGAAGATTGGTCCAAGATAGCACATATCCCTTGCATTGAGATTGATAATGACATGATTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

1259

Amino Acids

142.47

Weight (kDa)

5.89

Isoelectric Point (pI)

45.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	9 - 97	1.1e-17	Rx N-terminal domain
NB-ARC	PF00931	197 - 350	9e-38	NB-ARC domain
WHD_DRP	PF23559	435 - 503	1.9e-25	Disease resistance protein Winged helix domain
LRR_14	PF23598	576 - 874	7.4e-26	Leucine-rich repeat region
LRR_R13L1-DRL21	PF25019	692 - 815	8.7e-40	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13470
fragaria_vesca	FvH4_7g01990 FvH4_7g02000 FvH4_7g02110
malus_domestica	MD02G1298000.v1.1 MD07G1026200.v1.1
prunus_persica	Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1
pyrus_communis	pycom02g25090
rosa_chinensis	RchiOBHm_Chr1g0318991
rosa_laevigata	RLG00000030489 RLG00000030510 RLG00000030511
rosa_multiflora	Rmu_sc0003503.1_g000002 Rmu_sc0005870.1_g000006 Rmu_sc0006626.1_g000002 Rmu_sc0006626.1_g000003
rosa_roxburghii	Rroxscaffold_4G00328700
rosa_rugosa	Rorug01G0026300 Rorug01G0027300
rosa_samantha	Rh1AG038100 Rh1AG038200 Rh1AG039600 Rh1AG263000 Rh1BG034400 Rh1BG034500 Rh1BG036400 Rh1CG037100 Rh1DG032900 Rh1DG033000
rosa_wichuraiana	Rw1G002940 Rw1G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2935
AccB1I	GGYRCC	1 cut(s)	766
AccB7I	CCANNNNNTGG	3 cut(s)	2405, 2701, 2824
AccII	CGCG	2 cut(s)	93, 2106
AccIII	TCCGGA	2 cut(s)	308, 2320
AciI	CCGC	8 cut(s)	91, 93, 318, 321, 1819, 2106, 3472, 3676
AclI	AACGTT	1 cut(s)	2623
AclWI	GGATC	2 cut(s)	1160, 1836
AcoI	YGGCCR	1 cut(s)	3012
AcuI	CTGAAG	7 cut(s)	26, 247, 291, 2588, 2852, 3281, 3660
AcyI	GRCGYC	1 cut(s)	767
AhlI	ACTAGT	2 cut(s)	1193, 1948
AjnI	CCWGG	2 cut(s)	2823, 2836
AloI	GAACNNNNNNTCC	2 cut(s)	524, 556
Alw21I	GWGCWC	3 cut(s)	162, 2094, 3144
Alw26I	GTCTC	8 cut(s)	746, 988, 1056, 1151, 1522, 1558, 2328, 2424
AlwI	GGATC	2 cut(s)	1160, 1836
AlwNI	CAGNNNCTG	2 cut(s)	2701, 3615
Aor13HI	TCCGGA	2 cut(s)	308, 2320
AoxI	GGCC	2 cut(s)	2706, 3012
ArsI	GACNNNNNNTTYG	6 cut(s)	745, 777, 1307, 1339, 1567, 1599
Asp700I	GAANNNNTTC	1 cut(s)	899
AspLEI	GCGC	1 cut(s)	769
AspS9I	GGNCC	4 cut(s)	247, 1342, 2559, 3726
AsuHPI	GGTGA	3 cut(s)	2495, 2585, 3137
AvaII	GGWCC	4 cut(s)	247, 1342, 2559, 3726
AxyI	CCTNAGG	1 cut(s)	2913
BaeGI	GKGCMC	1 cut(s)	974
BalI	TGGCCA	1 cut(s)	3014
BanI	GGYRCC	1 cut(s)	766
BanII	GRGCYC	4 cut(s)	384, 2094, 2725, 3144
BbsI	GAAGAC	3 cut(s)	1526, 1951, 2858
Bbv12I	GWGCWC	3 cut(s)	162, 2094, 3144
BceAI	ACGGC	1 cut(s)	2488
BcgI	CGANNNNNNTGC	2 cut(s)	938, 972
BciT130I	CCWGG	2 cut(s)	2825, 2838
BciVI	GTATCC	1 cut(s)	671
BclI	TGATCA	1 cut(s)	963
BcoDI	GTCTC	8 cut(s)	746, 988, 1056, 1151, 1522, 1558, 2328, 2424
BcuI	ACTAGT	2 cut(s)	1193, 1948
BfmI	CTRYAG	1 cut(s)	1359
BfoI	RGCGCY	1 cut(s)	770
BfuAI	ACCTGC	1 cut(s)	2935
BfuI	GTATCC	1 cut(s)	671
BglII	AGATCT	1 cut(s)	1363
BlpI	GCTNAGC	1 cut(s)	645
BmcAI	AGTACT	2 cut(s)	1074, 3302
Bme1390I	CCNGG	2 cut(s)	2825, 2838
Bme18I	GGWCC	4 cut(s)	247, 1342, 2559, 3726
BmgT120I	GGNCC	4 cut(s)	247, 1342, 2559, 3726
BmiI	GGNNCC	3 cut(s)	381, 768, 2724
BmrFI	CCNGG	2 cut(s)	2825, 2838
BmrI	ACTGGG	1 cut(s)	3223
BmsI	GCATC	7 cut(s)	157, 229, 358, 1822, 1986, 2804, 3681
BmuI	ACTGGG	1 cut(s)	3223
BoxI	GACNNNNGTC	1 cut(s)	1974
BpiI	GAAGAC	3 cut(s)	1526, 1951, 2858
BplI	GAGNNNNNCTC	2 cut(s)	12, 44
BpmI	CTGGAG	4 cut(s)	1542, 2078, 2846, 3611
Bpu1102I	GCTNAGC	1 cut(s)	645
BpuEI	CTTGAG	2 cut(s)	674, 3350
BsaHI	GRCGYC	1 cut(s)	767
BsaI	GGTCTC	3 cut(s)	1056, 1151, 2328
BsaJI	CCNNGG	5 cut(s)	91, 171, 243, 1733, 2717
BsaWI	WCCGGW	2 cut(s)	308, 2320
Bse1I	ACTGG	5 cut(s)	1070, 1569, 2801, 3229, 3628
Bse21I	CCTNAGG	1 cut(s)	2913
Bse3DI	GCAATG	2 cut(s)	966, 3422
BseAI	TCCGGA	2 cut(s)	308, 2320
BseBI	CCWGG	2 cut(s)	2825, 2838
BseDI	CCNNGG	5 cut(s)	91, 171, 243, 1733, 2717
BseMI	GCAATG	2 cut(s)	966, 3422
BseNI	ACTGG	5 cut(s)	1070, 1569, 2801, 3229, 3628
BseRI	GAGGAG	1 cut(s)	518
BseSI	GKGCMC	1 cut(s)	974
BsgI	GTGCAG	4 cut(s)	1587, 2511, 2777, 3503
Bsh1236I	CGCG	2 cut(s)	93, 2106
BshFI	GGCC	2 cut(s)	2708, 3014
BshNI	GGYRCC	1 cut(s)	766
BsiHKAI	GWGCWC	3 cut(s)	162, 2094, 3144
BsiSI	CCGG	2 cut(s)	309, 2321
BslFI	GGGAC	2 cut(s)	896, 2613
BsmAI	GTCTC	8 cut(s)	746, 988, 1056, 1151, 1522, 1558, 2328, 2424
BsmBI	CGTCTC	1 cut(s)	2424
BsmFI	GGGAC	2 cut(s)	896, 2613
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	2 cut(s)	2708, 3014
Bso31I	GGTCTC	3 cut(s)	1056, 1151, 2328
Bsp1286I	GDGCHC	6 cut(s)	162, 384, 974, 2094, 2725, 3144
Bsp13I	TCCGGA	2 cut(s)	308, 2320
Bsp1407I	TGTACA	1 cut(s)	654
Bsp143I	GATC	8 cut(s)	784, 963, 1154, 1165, 1363, 1426, 1723, 1828
Bsp1720I	GCTNAGC	1 cut(s)	645
BspACI	CCGC	8 cut(s)	91, 93, 318, 321, 1819, 2106, 3472, 3676
BspANI	GGCC	2 cut(s)	2708, 3014
BspEI	TCCGGA	2 cut(s)	308, 2320
BspFNI	CGCG	2 cut(s)	93, 2106
BspLI	GGNNCC	3 cut(s)	381, 768, 2724
BspMAI	CTGCAG	1 cut(s)	1363
BspMI	ACCTGC	1 cut(s)	2935
BspPI	GGATC	2 cut(s)	1160, 1836
BspT107I	GGYRCC	1 cut(s)	766
BspTNI	GGTCTC	3 cut(s)	1056, 1151, 2328
BsrDI	GCAATG	2 cut(s)	966, 3422
BsrGI	TGTACA	1 cut(s)	654
BsrI	ACTGG	5 cut(s)	1070, 1569, 2801, 3229, 3628
BssECI	CCNNGG	5 cut(s)	91, 171, 243, 1733, 2717
BssMI	GATC	8 cut(s)	784, 963, 1154, 1165, 1363, 1426, 1723, 1828
BssNI	GRCGYC	1 cut(s)	767
BssT1I	CCWWGG	2 cut(s)	1733, 2717
Bst2UI	CCWGG	2 cut(s)	2825, 2838
Bst6I	CTCTTC	5 cut(s)	1385, 1407, 3300, 3492, 3636
BstACI	GRCGYC	1 cut(s)	767
BstAPI	GCANNNNNTGC	2 cut(s)	1037, 1127
BstAUI	TGTACA	1 cut(s)	654
BstC8I	GCNNGC	8 cut(s)	7, 486, 1038, 1119, 1239, 1748, 2696, 3474
BstDSI	CCRYGG	1 cut(s)	91
BstEII	GGTNACC	3 cut(s)	1714, 1854, 2646
BstENI	CCTNNNNNAGG	1 cut(s)	3201
BstFNI	CGCG	2 cut(s)	93, 2106
BstH2I	RGCGCY	1 cut(s)	770
BstHHI	GCGC	1 cut(s)	769
BstKTI	GATC	8 cut(s)	787, 966, 1157, 1168, 1366, 1429, 1726, 1831
BstMAI	GTCTC	8 cut(s)	746, 988, 1056, 1151, 1522, 1558, 2328, 2424
BstMBI	GATC	8 cut(s)	784, 963, 1154, 1165, 1363, 1426, 1723, 1828
BstMWI	GCNNNNNNNGC	8 cut(s)	217, 1037, 1127, 1450, 1819, 2162, 2219, 3421
BstNI	CCWGG	2 cut(s)	2825, 2838
BstNSI	RCATGY	1 cut(s)	1040
BstPAI	GACNNNNGTC	1 cut(s)	1974
BstPI	GGTNACC	3 cut(s)	1714, 1854, 2646
BstSCI	CCNGG	2 cut(s)	2823, 2836
BstSFI	CTRYAG	1 cut(s)	1359
BstSLI	GKGCMC	1 cut(s)	974
BstUI	CGCG	2 cut(s)	93, 2106
BstV2I	GAAGAC	3 cut(s)	1526, 1951, 2858
BstX2I	RGATCY	3 cut(s)	1165, 1363, 1828
BstYI	RGATCY	3 cut(s)	1165, 1363, 1828
Bsu36I	CCTNAGG	1 cut(s)	2913
BsuI	GTATCC	1 cut(s)	671
BsuRI	GGCC	2 cut(s)	2708, 3014
BtgI	CCRYGG	1 cut(s)	91
BtsI	GCAGTG	3 cut(s)	1289, 1839, 3491
BveI	ACCTGC	1 cut(s)	2935
Cac8I	GCNNGC	8 cut(s)	7, 486, 1038, 1119, 1239, 1748, 2696, 3474
CaiI	CAGNNNCTG	2 cut(s)	2701, 3615
CfoI	GCGC	1 cut(s)	769
Cfr13I	GGNCC	4 cut(s)	247, 1342, 2559, 3726
Cfr42I	CCGCGG	1 cut(s)	94
CseI	GACGC	2 cut(s)	1701, 1949
CsiI	ACCWGGT	1 cut(s)	2836
CspCI	CAANNNNNGTGG	4 cut(s)	2044, 2079, 2566, 2601
DinI	GGCGCC	1 cut(s)	768
DpnI	GATC	8 cut(s)	786, 965, 1156, 1167, 1365, 1428, 1725, 1830
DpnII	GATC	8 cut(s)	784, 963, 1154, 1165, 1363, 1426, 1723, 1828
DraI	TTTAAA	1 cut(s)	2509
EaeI	YGGCCR	1 cut(s)	3012
Eam1104I	CTCTTC	5 cut(s)	1385, 1407, 3300, 3492, 3636
EarI	CTCTTC	5 cut(s)	1385, 1407, 3300, 3492, 3636
EciI	GGCGGA	1 cut(s)	336
Ecl136II	GAGCTC	2 cut(s)	2092, 3142
Eco130I	CCWWGG	2 cut(s)	1733, 2717
Eco24I	GRGCYC	4 cut(s)	384, 2094, 2725, 3144
Eco31I	GGTCTC	3 cut(s)	1056, 1151, 2328
Eco47I	GGWCC	4 cut(s)	247, 1342, 2559, 3726
Eco53kI	GAGCTC	2 cut(s)	2092, 3142
Eco57I	CTGAAG	7 cut(s)	26, 247, 291, 2588, 2852, 3281, 3660
Eco81I	CCTNAGG	1 cut(s)	2913
Eco91I	GGTNACC	3 cut(s)	1714, 1854, 2646
EcoICRI	GAGCTC	2 cut(s)	2092, 3142
EcoNI	CCTNNNNNAGG	1 cut(s)	3201
EcoO109I	RGGNCCY	1 cut(s)	247
EcoO65I	GGTNACC	3 cut(s)	1714, 1854, 2646
EcoRI	GAATTC	1 cut(s)	324
EcoRII	CCWGG	2 cut(s)	2823, 2836
EcoT14I	CCWWGG	2 cut(s)	1733, 2717
EcoT22I	ATGCAT	2 cut(s)	364, 1488
EcoT38I	GRGCYC	4 cut(s)	384, 2094, 2725, 3144
EgeI	GGCGCC	1 cut(s)	768
EheI	GGCGCC	1 cut(s)	768
ErhI	CCWWGG	2 cut(s)	1733, 2717
Esp3I	CGTCTC	1 cut(s)	2424
FalI	AAGNNNNNCTT	8 cut(s)	195, 227, 665, 697, 1025, 1057, 1271, 1303
FaqI	GGGAC	2 cut(s)	896, 2613
FauI	CCCGC	1 cut(s)	3465
FauNDI	CATATG	1 cut(s)	3017
FbaI	TGATCA	1 cut(s)	963
FriOI	GRGCYC	4 cut(s)	384, 2094, 2725, 3144
GlaI	GCGC	1 cut(s)	768
GsuI	CTGGAG	4 cut(s)	1542, 2078, 2846, 3611
HaeII	RGCGCY	1 cut(s)	770
HaeIII	GGCC	2 cut(s)	2708, 3014
HapII	CCGG	2 cut(s)	309, 2321
HgaI	GACGC	2 cut(s)	1701, 1949
HhaI	GCGC	1 cut(s)	769
Hin1I	GRCGYC	1 cut(s)	767
Hin6I	GCGC	1 cut(s)	767
HinP1I	GCGC	1 cut(s)	767
HincII	GTYRAC	3 cut(s)	82, 1954, 2983
HindII	GTYRAC	3 cut(s)	82, 1954, 2983
HindIII	AAGCTT	3 cut(s)	273, 2429, 3007
HpaII	CCGG	2 cut(s)	309, 2321
HphI	GGTGA	3 cut(s)	2495, 2585, 3137
Hpy166II	GTNNAC	7 cut(s)	82, 655, 1954, 2983, 3128, 3371, 3542
Hpy8I	GTNNAC	7 cut(s)	82, 655, 1954, 2983, 3128, 3371, 3542
HpyCH4IV	ACGT	1 cut(s)	2623
HpyF10VI	GCNNNNNNNGC	8 cut(s)	217, 1037, 1127, 1450, 1819, 2162, 2219, 3421
HpySE526I	ACGT	1 cut(s)	2623
Hsp92I	GRCGYC	1 cut(s)	767
HspAI	GCGC	1 cut(s)	767
KasI	GGCGCC	1 cut(s)	766
Kpn2I	TCCGGA	2 cut(s)	308, 2320
Ksp22I	TGATCA	1 cut(s)	963
KspI	CCGCGG	1 cut(s)	94
Kzo9I	GATC	8 cut(s)	784, 963, 1154, 1165, 1363, 1426, 1723, 1828
LmnI	GCTCC	7 cut(s)	20, 379, 2097, 2608, 2728, 3090, 3630
LweI	GCATC	7 cut(s)	157, 229, 358, 1822, 1986, 2804, 3681
MabI	ACCWGGT	1 cut(s)	2836
MaeII	ACGT	1 cut(s)	2623
MaeIII	GTNAC	9 cut(s)	934, 1714, 1854, 2137, 2412, 2573, 2646, 3238, 3400
MalI	GATC	8 cut(s)	786, 965, 1156, 1167, 1365, 1428, 1725, 1830
MboI	GATC	8 cut(s)	784, 963, 1154, 1165, 1363, 1426, 1723, 1828
MfeI	CAATTG	2 cut(s)	998, 1883
MflI	RGATCY	3 cut(s)	1165, 1363, 1828
MhlI	GDGCHC	6 cut(s)	162, 384, 974, 2094, 2725, 3144
MlsI	TGGCCA	1 cut(s)	3014
MluNI	TGGCCA	1 cut(s)	3014
Mly113I	GGCGCC	1 cut(s)	767
MlyI	GAGTC	5 cut(s)	515, 1064, 1570, 2837, 3050
MmeI	TCCRAC	3 cut(s)	357, 1521, 2427
Mox20I	TGGCCA	1 cut(s)	3014
Mph1103I	ATGCAT	2 cut(s)	364, 1488
MroI	TCCGGA	2 cut(s)	308, 2320
MroXI	GAANNNNTTC	1 cut(s)	899
MscI	TGGCCA	1 cut(s)	3014
MslI	CAYNNNNRTG	3 cut(s)	700, 2223, 2991
Msp20I	TGGCCA	1 cut(s)	3014
MspA1I	CMGCKG	3 cut(s)	93, 318, 2701
MspI	CCGG	2 cut(s)	309, 2321
MspR9I	CCNGG	2 cut(s)	2825, 2838
MunI	CAATTG	2 cut(s)	998, 1883
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	2 cut(s)	2825, 2838
MvnI	CGCG	2 cut(s)	93, 2106
MwoI	GCNNNNNNNGC	8 cut(s)	217, 1037, 1127, 1450, 1819, 2162, 2219, 3421
NarI	GGCGCC	1 cut(s)	767
NdeI	CATATG	1 cut(s)	3017
NdeII	GATC	8 cut(s)	784, 963, 1154, 1165, 1363, 1426, 1723, 1828
NlaIV	GGNNCC	3 cut(s)	381, 768, 2724
NmeAIII	GCCGAG	2 cut(s)	196, 268
NmuCI	GTSAC	3 cut(s)	934, 2573, 3400
NsiI	ATGCAT	2 cut(s)	364, 1488
NspI	RCATGY	1 cut(s)	1040
PaeI	GCATGC	1 cut(s)	1040
PcsI	WCGNNNNNNNCGW	1 cut(s)	1747
PctI	GAATGC	1 cut(s)	364
PdmI	GAANNNNTTC	1 cut(s)	899
PfeI	GAWTC	7 cut(s)	305, 601, 913, 1208, 1793, 2228, 3032
PflMI	CCANNNNNTGG	3 cut(s)	2405, 2701, 2824
PfoI	TCCNGGA	1 cut(s)	2823
PleI	GAGTC	5 cut(s)	514, 1063, 1570, 2836, 3049
PluTI	GGCGCC	1 cut(s)	770
PpsI	GAGTC	5 cut(s)	514, 1063, 1570, 2836, 3049
PpuMI	RGGWCCY	1 cut(s)	247
PshAI	GACNNNNGTC	1 cut(s)	1974
Psp124BI	GAGCTC	2 cut(s)	2094, 3144
Psp1406I	AACGTT	1 cut(s)	2623
Psp5II	RGGWCCY	1 cut(s)	247
Psp6I	CCWGG	2 cut(s)	2823, 2836
PspEI	GGTNACC	3 cut(s)	1714, 1854, 2646
PspGI	CCWGG	2 cut(s)	2823, 2836
PspN4I	GGNNCC	3 cut(s)	381, 768, 2724
PspPI	GGNCC	4 cut(s)	247, 1342, 2559, 3726
PspPPI	RGGWCCY	1 cut(s)	247
PstI	CTGCAG	1 cut(s)	1363
PstNI	CAGNNNCTG	2 cut(s)	2701, 3615
PsuI	RGATCY	3 cut(s)	1165, 1363, 1828
PvuII	CAGCTG	1 cut(s)	2701
RseI	CAYNNNNRTG	3 cut(s)	700, 2223, 2991
SacI	GAGCTC	2 cut(s)	2094, 3144
SacII	CCGCGG	1 cut(s)	94
Sau3AI	GATC	8 cut(s)	784, 963, 1154, 1165, 1363, 1426, 1723, 1828
Sau96I	GGNCC	4 cut(s)	247, 1342, 2559, 3726
ScaI	AGTACT	2 cut(s)	1074, 3302
SchI	GAGTC	5 cut(s)	515, 1064, 1570, 2837, 3050
ScrFI	CCNGG	2 cut(s)	2825, 2838
SduI	GDGCHC	6 cut(s)	162, 384, 974, 2094, 2725, 3144
SexAI	ACCWGGT	1 cut(s)	2836
SfaNI	GCATC	7 cut(s)	157, 229, 358, 1822, 1986, 2804, 3681
SfcI	CTRYAG	1 cut(s)	1359
SfoI	GGCGCC	1 cut(s)	768
Sfr303I	CCGCGG	1 cut(s)	94
SgrBI	CCGCGG	1 cut(s)	94
SinI	GGWCC	4 cut(s)	247, 1342, 2559, 3726
SmiMI	CAYNNNNRTG	3 cut(s)	700, 2223, 2991
SmlI	CTYRAG	2 cut(s)	689, 3329
SmoI	CTYRAG	2 cut(s)	689, 3329
SpeI	ACTAGT	2 cut(s)	1193, 1948
SphI	GCATGC	1 cut(s)	1040
SsiI	CCGC	8 cut(s)	91, 93, 318, 321, 1819, 2106, 3472, 3676
SspDI	GGCGCC	1 cut(s)	766
SspI	AATATT	2 cut(s)	1305, 2300
SstI	GAGCTC	2 cut(s)	2094, 3144
StyD4I	CCNGG	2 cut(s)	2823, 2836
StyI	CCWWGG	2 cut(s)	1733, 2717
TaiI	ACGT	1 cut(s)	2626
TaqI	TCGA	2 cut(s)	54, 750
TatI	WGTACW	6 cut(s)	654, 1072, 1460, 1770, 2248, 3300
TauI	GCSGC	3 cut(s)	96, 321, 1822
TfiI	GAWTC	7 cut(s)	305, 601, 913, 1208, 1793, 2228, 3032
TseFI	GTSAC	3 cut(s)	934, 2573, 3400
Tsp45I	GTSAC	3 cut(s)	934, 2573, 3400
TspGWI	ACGGA	1 cut(s)	2723
Van91I	CCANNNNNTGG	3 cut(s)	2405, 2701, 2824
VpaK11BI	GGWCC	4 cut(s)	247, 1342, 2559, 3726
XagI	CCTNNNNNAGG	1 cut(s)	3201
XbaI	TCTAGA	2 cut(s)	847, 1595
XceI	RCATGY	1 cut(s)	1040
XcmI	CCANNNNNNNNNTGG	1 cut(s)	613
XmnI	GAANNNNTTC	1 cut(s)	899
ZrmI	AGTACT	2 cut(s)	1074, 3302
Zsp2I	ATGCAT	2 cut(s)	364, 1488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.