Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003892

Physical Location & Seq

Genomic Coordinates Reverse (-)

6661425 .. 6664195

Gene Structure 2771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG038200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGTCACTGGTGGACTACGCATCTTCAGACGACGACGTTTCGGAGGAAGATAAAGAGAACAAGGAAAACGAGCCGGCACAAGCATCCATGGATGAACCCCACTCTCCGACTCGTCCTCCTCACACCCAATCTGTTGTTTCATCATATCAGCAGCCTGAAAGTACTGCTTATTCATCAGCTCCTTCAGTCGAGAAACTTCCTGATGCTTCACAACTCTTTGGTTCTTCTGAGTTCTCATCCAATATGCTGAGTGGTAACTACCAGTCTTCTCTTGTTGGAGCTGAAAGTGCATCACGCAAAAGAGAGTCAAATTCCTTTGCTTCCCCTATTCCTCGCAGTAAAGTTCCTAGAGGTAACTTGCCCCATTCCAGGAATGTTCCAGATACACTTGGTGGTATGCTGGTTCCACCTCAGCTTAGTGGAAGGAGCAATGTTGTCACAGAAGATGTTAGCAAGCTATTTGTCAAAAAGCAAGGTGGTTCACCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

163

Amino Acids

17.5

Weight (kDa)

5.04

Isoelectric Point (pI)

73.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13470
fragaria_vesca	FvH4_7g01990 FvH4_7g02000 FvH4_7g02110
malus_domestica	MD02G1298000.v1.1 MD07G1026200.v1.1
prunus_persica	Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1
pyrus_communis	pycom02g25090
rosa_chinensis	RchiOBHm_Chr1g0318991
rosa_laevigata	RLG00000030489 RLG00000030510 RLG00000030511
rosa_multiflora	Rmu_sc0003503.1_g000002 Rmu_sc0005870.1_g000006 Rmu_sc0006626.1_g000002 Rmu_sc0006626.1_g000003
rosa_roxburghii	Rroxscaffold_4G00328700
rosa_rugosa	Rorug01G0026300 Rorug01G0027300
rosa_samantha	Rh1AG038100 Rh1AG038200 Rh1AG039600 Rh1AG263000 Rh1BG034400 Rh1BG034500 Rh1BG036400 Rh1CG037100 Rh1DG032900 Rh1DG033000
rosa_wichuraiana	Rw1G002940 Rw1G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	310
AcuI	CTGAAG	2 cut(s)	9, 168
AdeI	CACNNNGTG	1 cut(s)	392
AfaI	GTAC	1 cut(s)	163
AfiI	CCNNNNNNNGG	1 cut(s)	369
AjnI	CCWGG	1 cut(s)	368
AluBI	AGCT	4 cut(s)	179, 281, 415, 457
AluI	AGCT	4 cut(s)	179, 281, 415, 457
ApeKI	GCWGC	1 cut(s)	151
ApoI	RAATTY	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	474
BbsI	GAAGAC	1 cut(s)	258
BbvCI	CCTCAGC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	163
BciT130I	CCWGG	1 cut(s)	370
BfaI	CTAG	1 cut(s)	348
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
BmcAI	AGTACT	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	370
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	1 cut(s)	370
BmsI	GCATC	4 cut(s)	29, 92, 193, 299
BpiI	GAAGAC	1 cut(s)	258
Bpu10I	CCTNAGC	1 cut(s)	411
BsaJI	CCNNGG	1 cut(s)	87
BsaXI	ACNNNNNCTCC	2 cut(s)	100, 130
Bsc4I	CCNNNNNNNGG	1 cut(s)	369
Bse118I	RCCGGY	1 cut(s)	73
Bse1I	ACTGG	2 cut(s)	12, 262
Bse3DI	GCAATG	1 cut(s)	436
BseBI	CCWGG	1 cut(s)	370
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	3 cut(s)	83, 97, 236
BseLI	CCNNNNNNNGG	1 cut(s)	369
BseMI	GCAATG	1 cut(s)	436
BseMII	CTCAG	3 cut(s)	219, 239, 425
BseNI	ACTGG	2 cut(s)	12, 262
BseRI	GAGGAG	1 cut(s)	108
BseXI	GCAGC	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	369
Bsp19I	CCATGG	1 cut(s)	87
BspCNI	CTCAG	3 cut(s)	220, 240, 424
BspLI	GGNNCC	1 cut(s)	405
BsrDI	GCAATG	1 cut(s)	436
BsrFI	RCCGGY	1 cut(s)	73
BsrI	ACTGG	2 cut(s)	12, 262
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	370
Bst4CI	ACNGT	1 cut(s)	489
BstC8I	GCNNGC	2 cut(s)	75, 455
BstDEI	CTNAG	4 cut(s)	228, 248, 411, 416
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	3 cut(s)	83, 97, 236
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	1 cut(s)	370
BstSCI	CCNGG	1 cut(s)	368
BstV1I	GCAGC	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	258
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	3 cut(s)	83, 97, 236
BtsIMutI	CAGTG	1 cut(s)	5
Cac8I	GCNNGC	2 cut(s)	75, 455
Cfr10I	RCCGGY	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	6 cut(s)	73, 154, 179, 281, 415, 457
CviKI_1	RGCY	6 cut(s)	73, 154, 179, 281, 415, 457
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	4 cut(s)	228, 248, 411, 416
DraIII	CACNNNGTG	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	87
Eco57I	CTGAAG	2 cut(s)	9, 168
EcoRII	CCWGG	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	1 cut(s)	91
FaiI	YATR	4 cut(s)	89, 145, 245, 398
FalI	AAGNNNNNCTT	2 cut(s)	151, 183
FatI	CATG	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	152
FokI	GGATG	3 cut(s)	70, 104, 223
Fsp4HI	GCNGC	1 cut(s)	152
FspBI	CTAG	1 cut(s)	348
GluI	GCNGC	1 cut(s)	152
HapII	CCGG	1 cut(s)	74
Hin1II	CATG	1 cut(s)	91
HinfI	GANTC	2 cut(s)	109, 305
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	1 cut(s)	474
Hpy166II	GTNNAC	2 cut(s)	13, 482
Hpy188I	TCNGA	4 cut(s)	28, 43, 108, 229
Hpy188III	TCNNGA	3 cut(s)	190, 200, 380
Hpy8I	GTNNAC	2 cut(s)	13, 482
Hpy99I	CGWCG	2 cut(s)	35, 38
HpyAV	CCTTC	2 cut(s)	192, 417
HpyCH4III	ACNGT	1 cut(s)	489
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	1 cut(s)	290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	4 cut(s)	228, 248, 411, 416
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	91
KroI	GCCGGC	1 cut(s)	73
KroNI	GCCGGC	1 cut(s)	75
LmnI	GCTCC	3 cut(s)	184, 278, 426
LpnPI	CCDG	8 cut(s)	87, 168, 213, 275, 355, 382, 386, 393
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	4 cut(s)	29, 92, 193, 299
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	4 cut(s)	3, 254, 353, 436
MboII	GAAGA	5 cut(s)	15, 59, 216, 258, 455
MluCI	AATT	1 cut(s)	310
MlyI	GAGTC	2 cut(s)	103, 314
MmeI	TCCRAC	2 cut(s)	131, 256
MnlI	CCTC	6 cut(s)	37, 126, 129, 342, 344, 420
MroNI	GCCGGC	1 cut(s)	73
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	1 cut(s)	370
MvaI	CCWGG	1 cut(s)	370
MwoI	GCNNNNNNNGC	1 cut(s)	287
NaeI	GCCGGC	1 cut(s)	75
NcoI	CCATGG	1 cut(s)	87
NgoMIV	GCCGGC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	405
NmuCI	GTSAC	2 cut(s)	3, 436
PdiI	GCCGGC	1 cut(s)	75
PfoI	TCCNGGA	1 cut(s)	368
PkrI	GCNGC	1 cut(s)	153
PleI	GAGTC	2 cut(s)	103, 313
PpsI	GAGTC	2 cut(s)	103, 313
Psp6I	CCWGG	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	368
PspN4I	GGNNCC	1 cut(s)	405
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SatI	GCNGC	1 cut(s)	152
ScaI	AGTACT	1 cut(s)	163
SchI	GAGTC	2 cut(s)	103, 314
ScrFI	CCNGG	1 cut(s)	370
SetI	ASST	8 cut(s)	39, 181, 283, 355, 412, 417, 459, 478
SfaNI	GCATC	4 cut(s)	29, 92, 193, 299
Sse9I	AATT	1 cut(s)	310
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	1 cut(s)	368
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	489
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	1 cut(s)	189
TasI	AATT	1 cut(s)	310
TatI	WGTACW	1 cut(s)	161
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	2 cut(s)	3, 436
TseI	GCWGC	1 cut(s)	151
Tsp45I	GTSAC	2 cut(s)	3, 436
TspDTI	ATGAA	3 cut(s)	108, 129, 162
TspRI	CASTG	1 cut(s)	12
XapI	RAATTY	1 cut(s)	310
XspI	CTAG	1 cut(s)	348
ZrmI	AGTACT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.