Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003892

Physical Location & Seq

Genomic Coordinates Reverse (-)

2382763 .. 2386007

Gene Structure 3245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g02000.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTCACTGGTGGACTACGCATCTTCAGACGACGACGTTTCGGAGGAGGAAGACGATAAAAACAAGGAAAACGAGCCAGCACAAGCACCCATGGAGGAGCCCCACCCTCCCTCTCGTTCTCAACCCCAATCTGTTGTTTCATCGTATCAGCGGCCTGAAAGTGCTGCCCATTTATCAGCTCCATCGGTCCAGAAACTTCCAGATGCTTCACAACTCTTTGATTCTCCTGACTTCTCACCCAATATGATGAGTGGTAGCTACCATTCTTCTCATGTTGGAGGTGAAAGTGCATCACGCAAAAGAGAGTCAAACTCAATTGCTTCCTCTATTCCCCGCAGTAAAGTTCCTAGAGGTAATTTGCCCCATTCCAGGAATGTTCCAGATACTCTTGGTGGGATGCTGGTTCCACCTCAGCTTAATGGAAGGAGCAATGTTGTCACAGAAGATGTCAGCAAGCTATTTGTCAAGAAGCCAGTTGGCGGTTCACCACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

165

Amino Acids

17.64

Weight (kDa)

5.31

Isoelectric Point (pI)

81.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13470
fragaria_vesca	FvH4_7g01990 FvH4_7g02000 FvH4_7g02110
malus_domestica	MD02G1298000.v1.1 MD07G1026200.v1.1
prunus_persica	Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1
pyrus_communis	pycom02g25090
rosa_chinensis	RchiOBHm_Chr1g0318991
rosa_laevigata	RLG00000030489 RLG00000030510 RLG00000030511
rosa_multiflora	Rmu_sc0003503.1_g000002 Rmu_sc0005870.1_g000006 Rmu_sc0006626.1_g000002 Rmu_sc0006626.1_g000003
rosa_roxburghii	Rroxscaffold_4G00328700
rosa_rugosa	Rorug01G0026300 Rorug01G0027300
rosa_samantha	Rh1AG038100 Rh1AG038200 Rh1AG039600 Rh1AG263000 Rh1BG034400 Rh1BG034500 Rh1BG036400 Rh1CG037100 Rh1DG032900 Rh1DG033000
rosa_wichuraiana	Rw1G002940 Rw1G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	151, 334, 480
AcuI	CTGAAG	1 cut(s)	9
AfiI	CCNNNNNNNGG	2 cut(s)	369, 479
AjnI	CCWGG	1 cut(s)	368
AluBI	AGCT	4 cut(s)	179, 258, 415, 457
AluI	AGCT	4 cut(s)	179, 258, 415, 457
AoxI	GGCC	1 cut(s)	152
ApeKI	GCWGC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	187
AsuHPI	GGTGA	3 cut(s)	228, 293, 477
AvaII	GGWCC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	57
BbvCI	CCTCAGC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	370
BfaI	CTAG	1 cut(s)	348
BisI	GCNGC	2 cut(s)	152, 165
BlsI	GCNGC	2 cut(s)	153, 166
Bme1390I	CCNGG	1 cut(s)	370
Bme18I	GGWCC	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	2 cut(s)	99, 405
BmrFI	CCNGG	1 cut(s)	370
BmsI	GCATC	4 cut(s)	29, 193, 299, 387
BpiI	GAAGAC	1 cut(s)	57
BplI	GAGNNNNNCTC	2 cut(s)	296, 328
Bpu10I	CCTNAGC	1 cut(s)	411
BsaJI	CCNNGG	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	2 cut(s)	369, 479
Bse1I	ACTGG	2 cut(s)	12, 473
Bse3DI	GCAATG	1 cut(s)	436
BseBI	CCWGG	1 cut(s)	370
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	1 cut(s)	402
BseLI	CCNNNNNNNGG	2 cut(s)	369, 479
BseMI	GCAATG	1 cut(s)	436
BseMII	CTCAG	1 cut(s)	425
BseNI	ACTGG	2 cut(s)	12, 473
BseRI	GAGGAG	2 cut(s)	59, 110
BseXI	GCAGC	1 cut(s)	151
BshFI	GGCC	1 cut(s)	154
BslI	CCNNNNNNNGG	2 cut(s)	369, 479
BsnI	GGCC	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp19I	CCATGG	1 cut(s)	90
BspACI	CCGC	3 cut(s)	151, 334, 480
BspANI	GGCC	1 cut(s)	154
BspCNI	CTCAG	1 cut(s)	424
BspLI	GGNNCC	2 cut(s)	99, 405
BsrDI	GCAATG	1 cut(s)	436
BsrI	ACTGG	2 cut(s)	12, 473
BssECI	CCNNGG	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	370
Bst4CI	ACNGT	1 cut(s)	492
BstC8I	GCNNGC	2 cut(s)	78, 455
BstDEI	CTNAG	1 cut(s)	411
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	402
BstNI	CCWGG	1 cut(s)	370
BstSCI	CCNGG	1 cut(s)	368
BstV1I	GCAGC	1 cut(s)	151
BstV2I	GAAGAC	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	154
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	402
BtsIMutI	CAGTG	1 cut(s)	5
Cac8I	GCNNGC	2 cut(s)	78, 455
Cfr13I	GGNCC	1 cut(s)	187
CviAII	CATG	2 cut(s)	91, 272
CviJI	RGCY	8 cut(s)	76, 100, 154, 179, 258, 415, 457, 472
CviKI_1	RGCY	8 cut(s)	76, 100, 154, 179, 258, 415, 457, 472
DdeI	CTNAG	1 cut(s)	411
Eco130I	CCWWGG	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	2 cut(s)	94, 275
FaiI	YATR	3 cut(s)	92, 245, 273
FatI	CATG	2 cut(s)	90, 271
FauI	CCCGC	1 cut(s)	341
Fnu4HI	GCNGC	2 cut(s)	152, 165
FokI	GGATG	1 cut(s)	409
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	2 cut(s)	152, 165
FspBI	CTAG	1 cut(s)	348
GluI	GCNGC	2 cut(s)	152, 165
HaeIII	GGCC	1 cut(s)	154
Hin1II	CATG	2 cut(s)	94, 275
HinfI	GANTC	2 cut(s)	221, 305
HphI	GGTGA	3 cut(s)	228, 293, 477
Hpy166II	GTNNAC	2 cut(s)	13, 485
Hpy188I	TCNGA	2 cut(s)	28, 43
Hpy188III	TCNNGA	5 cut(s)	190, 200, 227, 380, 466
Hpy8I	GTNNAC	2 cut(s)	13, 485
Hpy99I	CGWCG	2 cut(s)	35, 38
HpyAV	CCTTC	1 cut(s)	417
HpyCH4III	ACNGT	1 cut(s)	492
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	1 cut(s)	290
HpyF3I	CTNAG	1 cut(s)	411
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	94, 275
LmnI	GCTCC	3 cut(s)	97, 184, 426
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	4 cut(s)	29, 193, 299, 387
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	2 cut(s)	3, 436
MboII	GAAGA	4 cut(s)	15, 62, 258, 455
MfeI	CAATTG	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	2 cut(s)	315, 355
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	9 cut(s)	37, 40, 88, 117, 121, 272, 334, 344, 420
MseI	TTAA	1 cut(s)	417
MspA1I	CMGCKG	1 cut(s)	151
MspR9I	CCNGG	1 cut(s)	370
MunI	CAATTG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	370
NcoI	CCATGG	1 cut(s)	90
NlaIII	CATG	2 cut(s)	94, 275
NlaIV	GGNNCC	2 cut(s)	99, 405
NmuCI	GTSAC	2 cut(s)	3, 436
PfeI	GAWTC	1 cut(s)	221
PfoI	TCCNGGA	1 cut(s)	368
PkrI	GCNGC	2 cut(s)	153, 166
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
Psp6I	CCWGG	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	368
PspN4I	GGNNCC	2 cut(s)	99, 405
PspPI	GGNCC	1 cut(s)	187
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	2 cut(s)	152, 165
Sau96I	GGNCC	1 cut(s)	187
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	370
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	8 cut(s)	39, 181, 260, 283, 355, 412, 417, 459
SfaNI	GCATC	4 cut(s)	29, 193, 299, 387
SinI	GGWCC	1 cut(s)	187
Sse9I	AATT	2 cut(s)	315, 355
SsiI	CCGC	3 cut(s)	151, 334, 480
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	1 cut(s)	368
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	492
TaiI	ACGT	1 cut(s)	39
TaqII	GACCGA	1 cut(s)	175
TasI	AATT	2 cut(s)	315, 355
TauI	GCSGC	1 cut(s)	154
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	2 cut(s)	3, 436
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	2 cut(s)	3, 436
TspDTI	ATGAA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	187
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.