Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003892

Physical Location & Seq

Genomic Coordinates Reverse (-)

4693338 .. 4697913

Gene Structure 4576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG034500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTCACTGGTGGACTACGCATCTTCAGACGACGACGTTTCAGAGGAGGAGGAAGATAAAGAGAACAAGGAAAACGAGCCGGCACAAGTAGCCATGGATGAACCCCACCCTCCGACTCGTCCTCCTCACACCCAATCTGTTGTTTCATCATATCAGCAGCCTGAAAGTACTGCTTATTCATCAGCTCCTTCAGTCGAGAAACTTCCTGATGCTTCACAACTCTTTGGTTCTTCTGAGTTCTCATCCAATATGCTGAGTGGTAACTACCAGTCTTCTCTTGTTGGAGCTGAAAGTGCATCACGCAAAAGAGAGTCAAATTCTTTTGCTTCCCCTATTCCTCGCAGTAAAGTTCCTAGAGGTAACTTGCCCCATTCCAGGAATGTTCCGGATACACTTGGTGGTATGCTGGTTCCACCTCAGCTTAGTGGAAGGAGCAATGTTGTCACAGAAGATGTTAGCAAGCTATTTGTCAAAAAGCAAGGTGGTTCACCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

165

Amino Acids

17.78

Weight (kDa)

4.86

Isoelectric Point (pI)

74.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13470
fragaria_vesca	FvH4_7g01990 FvH4_7g02000 FvH4_7g02110
malus_domestica	MD02G1298000.v1.1 MD07G1026200.v1.1
prunus_persica	Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1
pyrus_communis	pycom02g25090
rosa_chinensis	RchiOBHm_Chr1g0318991
rosa_laevigata	RLG00000030489 RLG00000030510 RLG00000030511
rosa_multiflora	Rmu_sc0003503.1_g000002 Rmu_sc0005870.1_g000006 Rmu_sc0006626.1_g000002 Rmu_sc0006626.1_g000003
rosa_roxburghii	Rroxscaffold_4G00328700
rosa_rugosa	Rorug01G0026300 Rorug01G0027300
rosa_samantha	Rh1AG038100 Rh1AG038200 Rh1AG039600 Rh1AG263000 Rh1BG034400 Rh1BG034500 Rh1BG036400 Rh1CG037100 Rh1DG032900 Rh1DG033000
rosa_wichuraiana	Rw1G002940 Rw1G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	385
AcsI	RAATTY	1 cut(s)	316
AcuI	CTGAAG	2 cut(s)	9, 174
AdeI	CACNNNGTG	1 cut(s)	398
AfaI	GTAC	1 cut(s)	169
AfiI	CCNNNNNNNGG	1 cut(s)	375
AjnI	CCWGG	1 cut(s)	374
AluBI	AGCT	4 cut(s)	185, 287, 421, 463
AluI	AGCT	4 cut(s)	185, 287, 421, 463
Aor13HI	TCCGGA	1 cut(s)	385
ApeKI	GCWGC	1 cut(s)	157
ApoI	RAATTY	1 cut(s)	316
AsuHPI	GGTGA	1 cut(s)	480
BbsI	GAAGAC	1 cut(s)	264
BbvCI	CCTCAGC	1 cut(s)	417
BbvI	GCAGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	376
BciVI	GTATCC	1 cut(s)	382
BfaI	CTAG	1 cut(s)	354
BfuI	GTATCC	1 cut(s)	382
BisI	GCNGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	159
BmcAI	AGTACT	1 cut(s)	169
Bme1390I	CCNGG	1 cut(s)	376
BmiI	GGNNCC	1 cut(s)	411
BmrFI	CCNGG	1 cut(s)	376
BmsI	GCATC	3 cut(s)	29, 199, 305
BpiI	GAAGAC	1 cut(s)	264
Bpu10I	CCTNAGC	1 cut(s)	417
BsaJI	CCNNGG	1 cut(s)	93
BsaWI	WCCGGW	1 cut(s)	385
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	1 cut(s)	375
Bse118I	RCCGGY	1 cut(s)	79
Bse1I	ACTGG	2 cut(s)	12, 268
Bse3DI	GCAATG	1 cut(s)	442
BseAI	TCCGGA	1 cut(s)	385
BseBI	CCWGG	1 cut(s)	376
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	2 cut(s)	103, 242
BseLI	CCNNNNNNNGG	1 cut(s)	375
BseMI	GCAATG	1 cut(s)	442
BseMII	CTCAG	3 cut(s)	225, 245, 431
BseNI	ACTGG	2 cut(s)	12, 268
BseRI	GAGGAG	3 cut(s)	59, 62, 114
BseXI	GCAGC	1 cut(s)	169
BsiSI	CCGG	2 cut(s)	80, 386
BslI	CCNNNNNNNGG	1 cut(s)	375
Bsp13I	TCCGGA	1 cut(s)	385
Bsp19I	CCATGG	1 cut(s)	93
BspCNI	CTCAG	3 cut(s)	226, 246, 430
BspEI	TCCGGA	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	411
BsrDI	GCAATG	1 cut(s)	442
BsrFI	RCCGGY	1 cut(s)	79
BsrI	ACTGG	2 cut(s)	12, 268
BssAI	RCCGGY	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	376
Bst4CI	ACNGT	1 cut(s)	495
BstC8I	GCNNGC	2 cut(s)	81, 461
BstDEI	CTNAG	4 cut(s)	234, 254, 417, 422
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	103, 242
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 293
BstNI	CCWGG	1 cut(s)	376
BstSCI	CCNGG	1 cut(s)	374
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	264
BsuI	GTATCC	1 cut(s)	382
BtgI	CCRYGG	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	103, 242
BtsIMutI	CAGTG	1 cut(s)	5
Cac8I	GCNNGC	2 cut(s)	81, 461
Cfr10I	RCCGGY	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	168
CviAII	CATG	1 cut(s)	94
CviJI	RGCY	7 cut(s)	79, 92, 160, 185, 287, 421, 463
CviKI_1	RGCY	7 cut(s)	79, 92, 160, 185, 287, 421, 463
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	4 cut(s)	234, 254, 417, 422
DraIII	CACNNNGTG	1 cut(s)	398
Eco130I	CCWWGG	1 cut(s)	93
Eco57I	CTGAAG	2 cut(s)	9, 174
EcoRII	CCWGG	1 cut(s)	374
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	1 cut(s)	97
FaiI	YATR	4 cut(s)	95, 151, 251, 404
FalI	AAGNNNNNCTT	2 cut(s)	157, 189
FatI	CATG	1 cut(s)	93
Fnu4HI	GCNGC	1 cut(s)	158
FokI	GGATG	2 cut(s)	110, 229
Fsp4HI	GCNGC	1 cut(s)	158
FspBI	CTAG	1 cut(s)	354
GluI	GCNGC	1 cut(s)	158
HapII	CCGG	2 cut(s)	80, 386
Hin1II	CATG	1 cut(s)	97
HinfI	GANTC	2 cut(s)	115, 311
HpaII	CCGG	2 cut(s)	80, 386
HphI	GGTGA	1 cut(s)	480
Hpy166II	GTNNAC	2 cut(s)	13, 488
Hpy188I	TCNGA	4 cut(s)	28, 43, 114, 235
Hpy188III	TCNNGA	3 cut(s)	196, 206, 386
Hpy8I	GTNNAC	2 cut(s)	13, 488
Hpy99I	CGWCG	2 cut(s)	35, 38
HpyAV	CCTTC	2 cut(s)	198, 423
HpyCH4III	ACNGT	1 cut(s)	495
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	1 cut(s)	296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 293
HpyF3I	CTNAG	4 cut(s)	234, 254, 417, 422
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	97
Kpn2I	TCCGGA	1 cut(s)	385
KroI	GCCGGC	1 cut(s)	79
KroNI	GCCGGC	1 cut(s)	81
LmnI	GCTCC	3 cut(s)	190, 284, 432
LpnPI	CCDG	8 cut(s)	93, 174, 219, 281, 361, 388, 392, 399
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	3 cut(s)	29, 199, 305
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	4 cut(s)	3, 260, 359, 442
MboII	GAAGA	5 cut(s)	15, 65, 222, 264, 461
MluCI	AATT	1 cut(s)	316
MlyI	GAGTC	2 cut(s)	109, 320
MmeI	TCCRAC	2 cut(s)	137, 262
MnlI	CCTC	9 cut(s)	37, 40, 43, 120, 132, 135, 348, 350, 426
MroI	TCCGGA	1 cut(s)	385
MroNI	GCCGGC	1 cut(s)	79
MspI	CCGG	2 cut(s)	80, 386
MspR9I	CCNGG	1 cut(s)	376
MvaI	CCWGG	1 cut(s)	376
MwoI	GCNNNNNNNGC	2 cut(s)	89, 293
NaeI	GCCGGC	1 cut(s)	81
NcoI	CCATGG	1 cut(s)	93
NgoMIV	GCCGGC	1 cut(s)	79
NlaIII	CATG	1 cut(s)	97
NlaIV	GGNNCC	1 cut(s)	411
NmuCI	GTSAC	2 cut(s)	3, 442
PdiI	GCCGGC	1 cut(s)	81
PfoI	TCCNGGA	1 cut(s)	374
PkrI	GCNGC	1 cut(s)	159
PleI	GAGTC	2 cut(s)	109, 319
PpsI	GAGTC	2 cut(s)	109, 319
Psp6I	CCWGG	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	374
PspN4I	GGNNCC	1 cut(s)	411
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
SatI	GCNGC	1 cut(s)	158
ScaI	AGTACT	1 cut(s)	169
SchI	GAGTC	2 cut(s)	109, 320
ScrFI	CCNGG	1 cut(s)	376
SetI	ASST	8 cut(s)	39, 187, 289, 361, 418, 423, 465, 484
SfaNI	GCATC	3 cut(s)	29, 199, 305
Sse9I	AATT	1 cut(s)	316
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	374
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	495
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	1 cut(s)	195
TasI	AATT	1 cut(s)	316
TatI	WGTACW	1 cut(s)	167
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	2 cut(s)	3, 442
TseI	GCWGC	1 cut(s)	157
Tsp45I	GTSAC	2 cut(s)	3, 442
TspDTI	ATGAA	3 cut(s)	114, 135, 168
TspRI	CASTG	1 cut(s)	12
XapI	RAATTY	1 cut(s)	316
XspI	CTAG	1 cut(s)	354
ZrmI	AGTACT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.