Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003892

Physical Location & Seq

Genomic Coordinates Forward (+)

4859110 .. 4859757

Gene Structure 648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG036400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGAACTGTCACCTGATCATAGGAGGGCTCGCAAGAAGATGTATCGAGATCGAAAGATGAATATATATAAGAAGGCGGAGGAGCTTTCCATACTTTGTGGTATCGATGTCGGTGTGATCCTGTTCCAACCAGCTGAGAAGAGCACTACTACTCAACCAGCTGCAGAGATTTGGCCTAAAGATCCTACAGAAGTCAAGCGCATTATCCGGAGATACAAGGCAAAGCCTGCCTACACTCTTGCTTCATCTCCTAGCGAAAGCCCGCCAGCAATTAAAGATACTATCAGTAGTACTCCTTCATCTTCATCTCCATCTCCATCTCGAAGTGTACTAGGGAAGAGAAATTTCCTAAACTTAGATTTGTCTTTGTCTGGTTTTTATGATTCGCGAATGAAAATTTTAAAAGATGACAAACGTAAGAAGAAGTTGCATGCTGATAATGATGAGAACATAAATTCCGAAGAGGAGATGGGGATGCAGTACGAGTTTCACACAAGATGGAATGCTGCTGGAAAAGATGAATTATACAAGGACGACGACAAATTGAGGATTGGATATGATGATCATGAGGCAAAGCTTGCTTCACTGGAAGCTAAGGGAGAAGCTATAACAAAGAGGATTGCTTCATTGGAGGCGACTTATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

215

Amino Acids

24.47

Weight (kDa)

9.07

Isoelectric Point (pI)

66.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	8 - 50	1.5e-11	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13470
fragaria_vesca	FvH4_7g01990 FvH4_7g02000 FvH4_7g02110
malus_domestica	MD02G1298000.v1.1 MD07G1026200.v1.1
prunus_persica	Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1
pyrus_communis	pycom02g25090
rosa_chinensis	RchiOBHm_Chr1g0318991
rosa_laevigata	RLG00000030489 RLG00000030510 RLG00000030511
rosa_multiflora	Rmu_sc0003503.1_g000002 Rmu_sc0005870.1_g000006 Rmu_sc0006626.1_g000002 Rmu_sc0006626.1_g000003
rosa_roxburghii	Rroxscaffold_4G00328700
rosa_rugosa	Rorug01G0026300 Rorug01G0027300
rosa_samantha	Rh1AG038100 Rh1AG038200 Rh1AG039600 Rh1AG263000 Rh1BG034400 Rh1BG034500 Rh1BG036400 Rh1CG037100 Rh1DG032900 Rh1DG033000
rosa_wichuraiana	Rw1G002940 Rw1G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	388
AccIII	TCCGGA	1 cut(s)	207
AciI	CCGC	2 cut(s)	77, 263
AclWI	GGATC	2 cut(s)	112, 176
AcsI	RAATTY	3 cut(s)	343, 396, 454
AfaI	GTAC	3 cut(s)	292, 330, 482
AloI	GAACNNNNNNTCC	2 cut(s)	440, 472
AluBI	AGCT	6 cut(s)	85, 134, 161, 577, 593, 605
AluI	AGCT	6 cut(s)	85, 134, 161, 577, 593, 605
Alw21I	GWGCWC	1 cut(s)	146
AlwI	GGATC	2 cut(s)	112, 176
Aor13HI	TCCGGA	1 cut(s)	207
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	161, 506
ApoI	RAATTY	3 cut(s)	343, 396, 454
AspLEI	GCGC	1 cut(s)	201
AsuHPI	GGTGA	1 cut(s)	3
BanII	GRGCYC	1 cut(s)	31
BarI	GAAGNNNNNNTAC	2 cut(s)	280, 312
Bbv12I	GWGCWC	1 cut(s)	146
BbvI	GCAGC	2 cut(s)	148, 493
BccI	CCATC	4 cut(s)	319, 325, 463, 492
BclI	TGATCA	2 cut(s)	16, 562
BfaI	CTAG	2 cut(s)	252, 332
BfmI	CTRYAG	2 cut(s)	162, 186
BisI	GCNGC	2 cut(s)	162, 507
BlsI	GCNGC	2 cut(s)	163, 508
BmcAI	AGTACT	1 cut(s)	292
BmsI	GCATC	1 cut(s)	465
Bpu10I	CCTNAGC	1 cut(s)	594
Bsa29I	ATCGAT	1 cut(s)	105
BsaWI	WCCGGW	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	591
BseAI	TCCGGA	1 cut(s)	207
BseCI	ATCGAT	1 cut(s)	105
BseGI	GGATG	1 cut(s)	480
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	591
BseRI	GAGGAG	2 cut(s)	95, 479
BseXI	GCAGC	2 cut(s)	148, 493
Bsh1236I	CGCG	1 cut(s)	388
BshFI	GGCC	1 cut(s)	175
BshVI	ATCGAT	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	208
BsmI	GAATGC	1 cut(s)	508
BsnI	GGCC	1 cut(s)	175
Bsp1286I	GDGCHC	2 cut(s)	31, 146
Bsp13I	TCCGGA	1 cut(s)	207
Bsp143I	GATC	5 cut(s)	16, 49, 117, 181, 562
Bsp68I	TCGCGA	1 cut(s)	388
BspACI	CCGC	2 cut(s)	77, 263
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	1 cut(s)	127
BspDI	ATCGAT	1 cut(s)	105
BspEI	TCCGGA	1 cut(s)	207
BspFNI	CGCG	1 cut(s)	388
BspHI	TCATGA	1 cut(s)	565
BspMAI	CTGCAG	1 cut(s)	166
BspPI	GGATC	2 cut(s)	112, 176
BspQI	GCTCTTC	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	591
BssMI	GATC	5 cut(s)	16, 49, 117, 181, 562
Bst4CI	ACNGT	1 cut(s)	9
Bst6I	CTCTTC	3 cut(s)	134, 332, 456
BstAPI	GCANNNNNTGC	2 cut(s)	227, 578
BstC8I	GCNNGC	6 cut(s)	31, 228, 263, 267, 432, 579
BstDEI	CTNAG	3 cut(s)	135, 355, 594
BstF5I	GGATG	1 cut(s)	480
BstFNI	CGCG	1 cut(s)	388
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	5 cut(s)	19, 52, 120, 184, 565
BstMBI	GATC	5 cut(s)	16, 49, 117, 181, 562
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 578
BstNSI	RCATGY	1 cut(s)	434
BstSFI	CTRYAG	2 cut(s)	162, 186
BstUI	CGCG	1 cut(s)	388
BstV1I	GCAGC	2 cut(s)	148, 493
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
Bsu15I	ATCGAT	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	175
BsuTUI	ATCGAT	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	480
BtsIMutI	CAGTG	1 cut(s)	584
BtuMI	TCGCGA	1 cut(s)	388
Cac8I	GCNNGC	6 cut(s)	31, 228, 263, 267, 432, 579
CciI	TCATGA	1 cut(s)	565
CfoI	GCGC	1 cut(s)	201
ClaI	ATCGAT	1 cut(s)	105
Csp6I	GTAC	3 cut(s)	291, 329, 481
CviAII	CATG	2 cut(s)	431, 566
CviQI	GTAC	3 cut(s)	291, 329, 481
DdeI	CTNAG	3 cut(s)	135, 355, 594
DpnI	GATC	5 cut(s)	18, 51, 119, 183, 564
DpnII	GATC	5 cut(s)	16, 49, 117, 181, 562
DraI	TTTAAA	1 cut(s)	402
Eam1104I	CTCTTC	3 cut(s)	134, 332, 456
EarI	CTCTTC	3 cut(s)	134, 332, 456
EciI	GGCGGA	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	31
FaeI	CATG	2 cut(s)	434, 569
FatI	CATG	2 cut(s)	430, 565
FauI	CCCGC	1 cut(s)	270
FbaI	TGATCA	2 cut(s)	16, 562
Fnu4HI	GCNGC	2 cut(s)	162, 507
FokI	GGATG	1 cut(s)	487
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	2 cut(s)	162, 507
FspBI	CTAG	2 cut(s)	252, 332
GlaI	GCGC	1 cut(s)	200
GluI	GCNGC	2 cut(s)	162, 507
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	1 cut(s)	208
HhaI	GCGC	1 cut(s)	201
Hin1II	CATG	2 cut(s)	434, 569
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	575
HinfI	GANTC	1 cut(s)	383
HpaII	CCGG	1 cut(s)	208
HphI	GGTGA	1 cut(s)	3
Hpy166II	GTNNAC	1 cut(s)	329
Hpy188I	TCNGA	1 cut(s)	460
Hpy188III	TCNNGA	5 cut(s)	47, 208, 321, 387, 566
Hpy8I	GTNNAC	1 cut(s)	329
Hpy99I	CGWCG	1 cut(s)	539
HpyAV	CCTTC	2 cut(s)	67, 306
HpyCH4III	ACNGT	1 cut(s)	9
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	3 cut(s)	164, 430, 478
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 578
HpyF3I	CTNAG	3 cut(s)	135, 355, 594
HpySE526I	ACGT	1 cut(s)	415
Hsp92II	CATG	2 cut(s)	434, 569
HspAI	GCGC	1 cut(s)	199
Kpn2I	TCCGGA	1 cut(s)	207
Ksp22I	TGATCA	2 cut(s)	16, 562
Kzo9I	GATC	5 cut(s)	16, 49, 117, 181, 562
LguI	GCTCTTC	1 cut(s)	134
LmnI	GCTCC	1 cut(s)	82
Lsp1109I	GCAGC	2 cut(s)	148, 493
LweI	GCATC	1 cut(s)	465
MaeI	CTAG	2 cut(s)	252, 332
MaeII	ACGT	1 cut(s)	415
MaeIII	GTNAC	1 cut(s)	9
MalI	GATC	5 cut(s)	18, 51, 119, 183, 564
MboI	GATC	5 cut(s)	16, 49, 117, 181, 562
MboII	GAAGA	6 cut(s)	49, 151, 294, 349, 433, 473
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	2 cut(s)	31, 146
MluCI	AATT	6 cut(s)	270, 343, 396, 454, 521, 542
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	7 cut(s)	18, 73, 457, 540, 562, 609, 625
MroI	TCCGGA	1 cut(s)	207
MseI	TTAA	3 cut(s)	273, 401, 646
MspA1I	CMGCKG	2 cut(s)	134, 161
MspI	CCGG	1 cut(s)	208
Mva1269I	GAATGC	1 cut(s)	508
MvnI	CGCG	1 cut(s)	388
MwoI	GCNNNNNNNGC	2 cut(s)	227, 578
NdeII	GATC	5 cut(s)	16, 49, 117, 181, 562
NlaIII	CATG	2 cut(s)	434, 569
NmuCI	GTSAC	1 cut(s)	9
NruI	TCGCGA	1 cut(s)	388
NspI	RCATGY	1 cut(s)	434
PaeI	GCATGC	1 cut(s)	434
PagI	TCATGA	1 cut(s)	565
PciSI	GCTCTTC	1 cut(s)	134
PctI	GAATGC	1 cut(s)	508
PfeI	GAWTC	1 cut(s)	383
PkrI	GCNGC	2 cut(s)	163, 508
PstI	CTGCAG	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	181
PvuII	CAGCTG	2 cut(s)	134, 161
RruI	TCGCGA	1 cut(s)	388
RsaI	GTAC	3 cut(s)	292, 330, 482
RsaNI	GTAC	3 cut(s)	291, 329, 481
SapI	GCTCTTC	1 cut(s)	134
SaqAI	TTAA	3 cut(s)	273, 401, 646
SatI	GCNGC	2 cut(s)	162, 507
Sau3AI	GATC	5 cut(s)	16, 49, 117, 181, 562
ScaI	AGTACT	1 cut(s)	292
SduI	GDGCHC	2 cut(s)	31, 146
SetI	ASST	8 cut(s)	16, 87, 136, 163, 418, 579, 595, 607
SfaNI	GCATC	1 cut(s)	465
SfcI	CTRYAG	2 cut(s)	162, 186
SphI	GCATGC	1 cut(s)	434
Sse9I	AATT	6 cut(s)	270, 343, 396, 454, 521, 542
SsiI	CCGC	2 cut(s)	77, 263
SspMI	CTAG	2 cut(s)	252, 332
TaaI	ACNGT	1 cut(s)	9
TaiI	ACGT	1 cut(s)	418
TaqI	TCGA	4 cut(s)	46, 52, 105, 322
TasI	AATT	6 cut(s)	270, 343, 396, 454, 521, 542
TatI	WGTACW	2 cut(s)	290, 328
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	3 cut(s)	273, 401, 646
Tru9I	TTAA	3 cut(s)	273, 401, 646
TscAI	CASTG	1 cut(s)	591
TseFI	GTSAC	1 cut(s)	9
TseI	GCWGC	2 cut(s)	161, 506
Tsp45I	GTSAC	1 cut(s)	9
TspDTI	ATGAA	7 cut(s)	74, 234, 288, 294, 407, 534, 615
TspRI	CASTG	1 cut(s)	591
XapI	RAATTY	3 cut(s)	343, 396, 454
XceI	RCATGY	1 cut(s)	434
XspI	CTAG	2 cut(s)	252, 332
ZrmI	AGTACT	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.