Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003892

Physical Location & Seq

Genomic Coordinates Reverse (-)

5440932 .. 5441579

Gene Structure 648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G002940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGAACTGTTACCCGATCAGAGGAGGGCTCGTAAGAAGATGTATCGAGATCGAAAGATGAATATATTTAAAAAGGGGGAGGAGCTTTCCATACTTTGTGGTACCGATGTCCTTGTGATCCTGTTCCAACCAACTGACAAGGATACTACTAGTCAGCCAGCTGCAGAGACTTGGCCTAAAGATCCCACAGAAGTCGAACGCATTATCCGCAGATACAAGGCAAAGCTTGCAGCCTCCACTCATGCTTCATCTCCTAGCACAAGCATGCCGGCAATCAAAGATAAGTCTACTAGTACTCCTCCATCTTCATCTCCATCACGAAGTGTACCAGAGAAGAGAAAATACATGAACTTAGATTTGTCTTTGTCCGGTTCTTATGATTCCCAAACGAAAAAGTTGAAAGAGGACAAGGGTAAGAAGAAGTTGCATGCTTGGTATGATGATGAGAATATAAATTCACAAGAGGCCGGCATGGAGATGCAGCTCAAGTATCCAACAATCTGGGATCATGCTGGACGAGAAAATTTATACGACGACGGGGAATTGATGATTGGATATGATGATCATCAAGCAAAACTTGCTTCATTGGAAGCTAAGCAAAAAGCTATAACAAAAAGAATTGCTTCATTGGAGGCAACTCATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

215

Amino Acids

24.41

Weight (kDa)

9.07

Isoelectric Point (pI)

54.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	8 - 47	2.5e-10	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13470
fragaria_vesca	FvH4_7g01990 FvH4_7g02000 FvH4_7g02110
malus_domestica	MD02G1298000.v1.1 MD07G1026200.v1.1
prunus_persica	Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1 Prupe.2G026400_v2.0.a1
pyrus_communis	pycom02g25090
rosa_chinensis	RchiOBHm_Chr1g0318991
rosa_laevigata	RLG00000030489 RLG00000030510 RLG00000030511
rosa_multiflora	Rmu_sc0003503.1_g000002 Rmu_sc0005870.1_g000006 Rmu_sc0006626.1_g000002 Rmu_sc0006626.1_g000003
rosa_roxburghii	Rroxscaffold_4G00328700
rosa_rugosa	Rorug01G0026300 Rorug01G0027300
rosa_samantha	Rh1AG038100 Rh1AG038200 Rh1AG039600 Rh1AG263000 Rh1BG034400 Rh1BG034500 Rh1BG036400 Rh1CG037100 Rh1DG032900 Rh1DG033000
rosa_wichuraiana	Rw1G002940 Rw1G002950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	101
AccB1I	GGYRCC	1 cut(s)	101
AccI	GTMKAC	1 cut(s)	287
AciI	CCGC	1 cut(s)	208
AclWI	GGATC	3 cut(s)	112, 176, 513
AcsI	RAATTY	2 cut(s)	454, 523
AdeI	CACNNNGTG	1 cut(s)	323
AfaI	GTAC	3 cut(s)	103, 295, 327
AfiI	CCNNNNNNNGG	1 cut(s)	21
AgsI	TTSAA	1 cut(s)	400
AhlI	ACTAGT	2 cut(s)	149, 290
AjuI	GAANNNNNNNTTGG	2 cut(s)	534, 566
AloI	GAACNNNNNNTCC	2 cut(s)	189, 221
AluBI	AGCT	6 cut(s)	85, 161, 226, 484, 593, 605
AluI	AGCT	6 cut(s)	85, 161, 226, 484, 593, 605
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	3 cut(s)	112, 176, 513
AoxI	GGCC	2 cut(s)	173, 465
ApeKI	GCWGC	3 cut(s)	161, 230, 481
ApoI	RAATTY	2 cut(s)	454, 523
Asp700I	GAANNNNTTC	1 cut(s)	622
Asp718I	GGTACC	1 cut(s)	101
BaeI	ACNNNNGTAYC	2 cut(s)	93, 126
BanI	GGYRCC	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	31
BarI	GAAGNNNNNNTAC	2 cut(s)	326, 358
BbvI	GCAGC	3 cut(s)	148, 242, 493
BccI	CCATC	2 cut(s)	310, 322
BciVI	GTATCC	2 cut(s)	136, 501
BclI	TGATCA	1 cut(s)	562
BcoDI	GTCTC	1 cut(s)	161
BcuI	ACTAGT	2 cut(s)	149, 290
BfaI	CTAG	3 cut(s)	150, 255, 291
BfmI	CTRYAG	1 cut(s)	162
BfuI	GTATCC	2 cut(s)	136, 501
BisI	GCNGC	3 cut(s)	162, 231, 482
BlpI	GCTNAGC	1 cut(s)	594
BlsI	GCNGC	3 cut(s)	163, 232, 483
BmcAI	AGTACT	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	103
BmsI	GCATC	1 cut(s)	468
BplI	GAGNNNNNCTC	2 cut(s)	13, 45
Bpu1102I	GCTNAGC	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	470
BsaBI	GATNNNNATC	1 cut(s)	564
BsaWI	WCCGGW	1 cut(s)	368
BsaXI	ACNNNNNCTCC	4 cut(s)	16, 46, 280, 310
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
Bse118I	RCCGGY	2 cut(s)	268, 467
Bse8I	GATNNNNATC	1 cut(s)	564
BseJI	GATNNNNATC	1 cut(s)	564
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseRI	GAGGAG	3 cut(s)	37, 95, 288
BseXI	GCAGC	3 cut(s)	148, 242, 493
BshFI	GGCC	2 cut(s)	175, 467
BshNI	GGYRCC	1 cut(s)	101
BsiSI	CCGG	3 cut(s)	269, 369, 468
BslI	CCNNNNNNNGG	1 cut(s)	21
BsmAI	GTCTC	1 cut(s)	161
BsnI	GGCC	2 cut(s)	175, 467
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	6 cut(s)	16, 49, 117, 181, 505, 562
Bsp1720I	GCTNAGC	1 cut(s)	594
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	2 cut(s)	175, 467
BspLI	GGNNCC	1 cut(s)	103
BspMAI	CTGCAG	1 cut(s)	166
BspPI	GGATC	3 cut(s)	112, 176, 513
BspT107I	GGYRCC	1 cut(s)	101
BsrFI	RCCGGY	2 cut(s)	268, 467
BssAI	RCCGGY	2 cut(s)	268, 467
BssMI	GATC	6 cut(s)	16, 49, 117, 181, 505, 562
Bst4CI	ACNGT	1 cut(s)	9
Bst6I	CTCTTC	1 cut(s)	329
BstAPI	GCANNNNNTGC	3 cut(s)	227, 578, 641
BstC8I	GCNNGC	6 cut(s)	159, 228, 266, 270, 429, 469
BstDEI	CTNAG	2 cut(s)	352, 594
BstKTI	GATC	6 cut(s)	19, 52, 120, 184, 508, 565
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	6 cut(s)	16, 49, 117, 181, 505, 562
BstMWI	GCNNNNNNNGC	4 cut(s)	207, 227, 578, 641
BstNSI	RCATGY	2 cut(s)	268, 431
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	3 cut(s)	148, 242, 493
BstX2I	RGATCY	1 cut(s)	181
BstXI	CCANNNNNNTGG	1 cut(s)	501
BstYI	RGATCY	1 cut(s)	181
BsuI	GTATCC	2 cut(s)	136, 501
BsuRI	GGCC	2 cut(s)	175, 467
Cac8I	GCNNGC	6 cut(s)	159, 228, 266, 270, 429, 469
Cfr10I	RCCGGY	2 cut(s)	268, 467
Csp6I	GTAC	3 cut(s)	102, 294, 326
CviAII	CATG	7 cut(s)	242, 265, 346, 428, 472, 509, 641
CviQI	GTAC	3 cut(s)	102, 294, 326
DdeI	CTNAG	2 cut(s)	352, 594
DpnI	GATC	6 cut(s)	18, 51, 119, 183, 507, 564
DpnII	GATC	6 cut(s)	16, 49, 117, 181, 505, 562
DraI	TTTAAA	1 cut(s)	70
DraIII	CACNNNGTG	1 cut(s)	323
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Eco24I	GRGCYC	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	31
FaeI	CATG	7 cut(s)	245, 268, 349, 431, 475, 512, 644
FalI	AAGNNNNNCTT	4 cut(s)	561, 593, 607, 639
FatI	CATG	7 cut(s)	241, 264, 345, 427, 471, 508, 640
FbaI	TGATCA	1 cut(s)	562
FblI	GTMKAC	1 cut(s)	287
Fnu4HI	GCNGC	3 cut(s)	162, 231, 482
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	3 cut(s)	162, 231, 482
FspBI	CTAG	3 cut(s)	150, 255, 291
GluI	GCNGC	3 cut(s)	162, 231, 482
HaeIII	GGCC	2 cut(s)	175, 467
HapII	CCGG	3 cut(s)	269, 369, 468
Hin1II	CATG	7 cut(s)	245, 268, 349, 431, 475, 512, 644
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	1 cut(s)	380
HpaII	CCGG	3 cut(s)	269, 369, 468
Hpy166II	GTNNAC	2 cut(s)	288, 326
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	2 cut(s)	47, 318
Hpy8I	GTNNAC	2 cut(s)	288, 326
Hpy99I	CGWCG	2 cut(s)	536, 539
HpyCH4III	ACNGT	1 cut(s)	9
HpyCH4V	TGCA	4 cut(s)	164, 230, 427, 481
HpyF10VI	GCNNNNNNNGC	4 cut(s)	207, 227, 578, 641
HpyF3I	CTNAG	2 cut(s)	352, 594
Hsp92II	CATG	7 cut(s)	245, 268, 349, 431, 475, 512, 644
KpnI	GGTACC	1 cut(s)	105
KroI	GCCGGC	2 cut(s)	268, 467
KroNI	GCCGGC	2 cut(s)	270, 469
Ksp22I	TGATCA	1 cut(s)	562
Kzo9I	GATC	6 cut(s)	16, 49, 117, 181, 505, 562
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	8 cut(s)	134, 171, 282, 342, 382, 481, 487, 498
Lsp1109I	GCAGC	3 cut(s)	148, 242, 493
LweI	GCATC	1 cut(s)	468
MaeI	CTAG	3 cut(s)	150, 255, 291
MaeIII	GTNAC	1 cut(s)	9
MalI	GATC	6 cut(s)	18, 51, 119, 183, 507, 564
MboI	GATC	6 cut(s)	16, 49, 117, 181, 505, 562
MboII	GAAGA	4 cut(s)	49, 297, 346, 430
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	4 cut(s)	454, 523, 542, 618
MmeI	TCCRAC	2 cut(s)	151, 518
MnlI	CCTC	8 cut(s)	15, 18, 73, 244, 309, 397, 457, 625
MroNI	GCCGGC	2 cut(s)	268, 467
MroXI	GAANNNNTTC	1 cut(s)	622
MseI	TTAA	2 cut(s)	69, 646
MslI	CAYNNNNRTG	2 cut(s)	263, 476
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	3 cut(s)	269, 369, 468
MwoI	GCNNNNNNNGC	4 cut(s)	207, 227, 578, 641
NaeI	GCCGGC	2 cut(s)	270, 469
NdeII	GATC	6 cut(s)	16, 49, 117, 181, 505, 562
NgoMIV	GCCGGC	2 cut(s)	268, 467
NlaIII	CATG	7 cut(s)	245, 268, 349, 431, 475, 512, 644
NlaIV	GGNNCC	1 cut(s)	103
NspI	RCATGY	2 cut(s)	268, 431
PaeI	GCATGC	2 cut(s)	268, 431
PdiI	GCCGGC	2 cut(s)	270, 469
PdmI	GAANNNNTTC	1 cut(s)	622
PfeI	GAWTC	1 cut(s)	380
PkrI	GCNGC	3 cut(s)	163, 232, 483
PspN4I	GGNNCC	1 cut(s)	103
PstI	CTGCAG	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	3 cut(s)	103, 295, 327
RsaNI	GTAC	3 cut(s)	102, 294, 326
RseI	CAYNNNNRTG	2 cut(s)	263, 476
SaqAI	TTAA	2 cut(s)	69, 646
SatI	GCNGC	3 cut(s)	162, 231, 482
Sau3AI	GATC	6 cut(s)	16, 49, 117, 181, 505, 562
ScaI	AGTACT	1 cut(s)	295
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	6 cut(s)	87, 163, 228, 486, 595, 607
SfaNI	GCATC	1 cut(s)	468
SfcI	CTRYAG	1 cut(s)	162
SmiMI	CAYNNNNRTG	2 cut(s)	263, 476
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
SpeI	ACTAGT	2 cut(s)	149, 290
SphI	GCATGC	2 cut(s)	268, 431
Sse9I	AATT	4 cut(s)	454, 523, 542, 618
SsiI	CCGC	1 cut(s)	208
SspMI	CTAG	3 cut(s)	150, 255, 291
TaaI	ACNGT	1 cut(s)	9
TaqI	TCGA	3 cut(s)	46, 52, 195
TasI	AATT	4 cut(s)	454, 523, 542, 618
TatI	WGTACW	1 cut(s)	293
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	2 cut(s)	69, 646
Tru9I	TTAA	2 cut(s)	69, 646
TseI	GCWGC	3 cut(s)	161, 230, 481
TspDTI	ATGAA	6 cut(s)	74, 237, 297, 362, 573, 615
XapI	RAATTY	2 cut(s)	454, 523
XceI	RCATGY	2 cut(s)	268, 431
XmiI	GTMKAC	1 cut(s)	287
XmnI	GAANNNNTTC	1 cut(s)	622
XspI	CTAG	3 cut(s)	150, 255, 291
ZrmI	AGTACT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.