Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003738

Physical Location & Seq

Genomic Coordinates Reverse (-)

6547625 .. 6553283

Gene Structure 5659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G19420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3318 bp

ATGTCGAGGAACGGACGAATGACGCCGTCGGATCTTAGTAGAGCCGGTCCAGTGACGAGGGATATTGAGCAGGCTATCACTGCTCTTAAAAAAGGAGCTTATTTGCTTAAGTATGGCAGAAGGGGAAAGCCTAAGTTCTGTCCATTTCGCCTTTCGAATGATGAATCTGTTTTGATATGGTTTTCTGGGAAGGAGGAAAAACATTTGAAGCTAAGTCATGTTTCCAGGATCATCTCTGGGCAGCGCACTCCTATTTTTCAGAGATATCCACGTCCTGAGAAGGAATATCAATCGTTCTCGCTAATATATGACGAGAGGTCACTGGATTTGATATGCAAGGATAAAGATGAGGCTGAAGTGTGGTTTAGTGGTCTAAAAGCCTTGATATCCCGTTGTCATCAACGGAAATGGAGGACCGAATCGAGAAGTGATGGAACGCCATCCGAAGCTAATAGTCCGAGAACATATACCCGGAGAAGCTCCCCTTTACATTCTCCATTTAGTAGCAATGAAAGTTTCCAGAAGGAGGGCTCAAATCACCTTCGTCTTCACAGTCCATATGAGAGCCCGCCTAAGAATGGCGTTGACAAGGCATTTTCAGACATGTCGTTGTATGCAGTTCCTCCAAAAGGTTTTTTCCCCCCAGGTTCGGCAACTATGTCAGTTCACTCTTTGTCATCTGGAGGCTCAGATACGCTACATGGTCACATGAAAGGAATGGGTATGGATGCTTTTAGAGTTAGTCTGTCAAGTGCGATTAGTTCGTCGAGCCATGGTTCTGGTCATGATGATGGAGACACATTGGGAGACGTTTTCATGTGGGGAGAAGGAATAGGCGAAGGTGTTTTGGGTGGTGGAAACCACAGAGTTGGAAGTTCGTTGGAGATCAAAATGGATTCCTTACTGCCAAAAGCTTTAGAGTCTACTATAGTACTTGATGTCCAGAATATTGCTTGCGGTGGACAACATGCTGTCCTTGTAACAAAACAAGGAGAAAGTTTTTCTTGGGGAGAGGAATCTGAAGGTAGGCTTGGCCATGGTGTGGATTCCAATGTTCAACATCCAAAGCTCATTGATGCCCTCAATACCACAAATATTGAGCTTGTAGCATGTGGTGAATACCATAGTTGTGCAGTTACTCTATCGGGGGATTTGTATACCTGGGGTAAAGGAGATTTTGGTATTCTGGGACATGGAAATGAAGTCAGTCACTGGGTCCCCAAAAGAGTAAATTTTCTGATGGAAGGGATACATGTATCATCCATCGCTTGTGGGCCTTACCACACAGCTGTTGTGACTTCCGCTGGGCAGTTGTTTACTTTTGGTGATGGGACCTTTGGTGTTTTGGGCCATGGAGACAGGAAAAGTGTTTTCATACCTAGAGAGGTAGACTCCTTGAAAGGTCTTCGCACTGTTCGGGCAGCCTGTGGTGTATGGCACACAGCCGCAGTTGTAGAAGTCATGGTTGGGAGCTCGAGCTCTAGTAACTGCTCTTCAGGAAAGCTCTTTACATGGGGTGATGGTGACAAGAGTCGTCTTGGTCATGGTGACAAAGAACCAAAACTTGTGCCTACCTGTGTTGCAGCTCTTGTAGAACCTAATTTTTGTCAAGTTGCGTGTGGACATAGCCTAACAGTTGCACTTACAACATCGGGCCACGTCTATACTATGGGCAGTCCTGTTTATGGTCAGCTTGGAAACCCACATGCAGATGGAAAGGTTCCAACCCGTGTCGACGGCAAACTTCACAAGAGTTTTGTCGAAGAGATTGCTTGCGGTGCTTATCATGTTGCAGTTTTAACTTCAAGGACTGAGGTTTACACTTGGGGAAAAGGATCAAATGGTAGACTAGGCCATGGGGATGCAGATGATCGAAATTCCCCCACATTGGTTGAGTCGCTGAAGGATAAACAGGTGAAAAGTATTGCATGTGGTTCTAACTTCACCGCAGCTGTCTGTCTTCACAAGTGGGCATCAGGGATGGACCAGTCCATGTGTTCAGGTTGCCGTCAGCCTTTCAATTTCAAGAGAAAGCGGCACAATTGCTATAACTGTGGACTTGTGTTTTGCCATTCTTGCAGTAATAAAAAGTCCCTGAAGGCTTGTATGGCACCAAACCCTAACAAACCATATCGAGTGTGTGATAGGTGTTTCAACAAATTGAAAAAGGCCATGGAAACGGATCCATCATCTCATTCTTCTTTGAGTCGAAGAGAAAGTGTCAACCAAGGATCAGATGCAATTGACAGAGATGAGAAGTTGGATACTAGATCCGACGGACAGCTAGCTAGATTCTCATTGTTGGAGCCCATGAGGCAAGTGGACAGTCGATCCAAGAAAAATAAGAAATATGAATTCAATAGTAGTCGTGTCTCACCAATACCGAGTGGGGGCTCGCACCGGGGTTCACTAAACATAACCAAGTCTTTTAATCCAACTTTCGGATCATCAAAGAAATTCTTCTCAGCTTCAGTTCCTGGTTCCCGAATTGCGTCCCGGGCAACTTCACCAATATCAAGACGTCCTAGCCCACCTCGGTCAACAACGCCAACTCCCACTCTTTCAGGACTAACTACACCAAAAATTGTCGTGGATGATACCAAGAGAAGCAATGATAACCTAAGCCAAGAGGTGGTTATGCTAAGATCTCAAGTTGAAAATCTTACACGGAAGGCACAACTTCAAGAAGTTGAACTGGAAAGAACAACCAAACAGCTAAAGGAGGCACTAGCAATTGCTAGTGAAGAATCAGCGAGATGCAAGGCAGCAAAAGAAGTGATCAAATCACTTACCGCTCAATTGAAAGACATGGCTGAAAGACTACCTGTTGGATCAGCTCGGACTGTCAAGTCTCCGTCTCTCAATTCATTTGGTTCCAGTCCTGATTACGCTGCCCCTTCTTCTAACACCTTAAACCGTCCAAACAGTCGAGAAACTGATTCTGATAGCCTAACCACCGTCCCAATGTTTTCAAATGGGACCAGCACACCTGTTTTCGATAGTGGAAGTTACCGACAGCAAGCTAATCATGCTGCTGAAGCGATAAATAGAATCAGCACACGATCAAAAGAAAGTGAACCCCGTAACGAAAATGAATGGGTTGAACAAGATGAACCTGGTGTGTACATCACTCTCACAGCCTTAGCTGGAGGTGCAAGGGATCTCAAACGTGTCCGTTTCAGCCGGAAGCGGTTTAGTGAGAAACAAGCAGAAGAATGGTGGGCAGAGAACAGAGGAAGAGTTTACGAACAATACAATGTACGCATAGTAGTTGATAAATCCAGTGTGGGTGTAGGAAGTGAAGACTTGGGTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0004842 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005814 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006974 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0015031 GO:0015630 GO:0015833 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0031974 GO:0031981 GO:0032182 GO:0032183 GO:0032446 GO:0033036 GO:0033554 GO:0034613 GO:0034641 GO:0036211 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050896 GO:0051020 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0098772 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

1105

Amino Acids

120.74

Weight (kDa)

9.09

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_12	PF16457	23 - 129	2.3e-09	Pleckstrin homology domain
WD40_RLD	PF25390	270 - 651	7.8e-84	RCC1-like domain
RCC1	PF00415	331 - 379	2.3e-11	Regulator of chromosome condensation (RCC1) repeat
Alsin_RLD	PF25384	333 - 441	4.9e-07	Alsin RCC1-like domain
RCC1_2	PF13540	368 - 394	2.8e-08	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	382 - 432	2.3e-15	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	419 - 447	2.6e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	436 - 484	2.9e-13	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	499 - 548	4.5e-13	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	551 - 600	2e-08	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	605 - 652	2.1e-15	Regulator of chromosome condensation (RCC1) repeat
FYVE	PF01363	656 - 722	1e-14	FYVE zinc finger
BRX_N	PF13713	915 - 948	2.1e-16	Transcription factor BRX N-terminal domain
BRX_assoc	PF16627	956 - 1024	2.8e-21	Unstructured region between BRX_N and BRX domain
BRX	PF08381	1030 - 1085	1.4e-28	Transcription factor regulating root and shoot growth via Pin3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12350 AT5G19420 AT5G19420 AT5G19420
fragaria_vesca	FvH4_7g02960 FvH4_7g02960 FvH4_7g02960 FvH4_7g02960
malus_domestica	MD02G1288400.v1.1 MD07G1038100.v1.1 MD07G1038400.v1.1 MD13G1037300.v1.1
prunus_persica	Prupe.2G034600_v2.0.a1 Prupe.2G034600_v2.0.a1 Prupe.2G034600_v2.0.a1
pyrus_communis	pycom02g24410 pycom05g01140 pycom07g02640 pycom07g02670 pycom16g06500
rosa_chinensis	RchiOBHm_Chr1g0323931
rosa_laevigata	RLG00000030242
rosa_multiflora	Rmu_co8261369.1_g000001 Rmu_sc0001449.1_g000001 Rmu_sc0011010.1_g000012 Rmu_sc0012343.1_g000006 Rmu_sc0012343.1_g000007
rosa_roxburghii	Rroxscaffold_4G00326110
rosa_rugosa	Rorug01G0040600
rosa_samantha	Rh1AG058500 Rh1BG049600 Rh1CG060400 Rh1DG064400
rosa_wichuraiana	Rw0G011380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2848
AatII	GACGTC	1 cut(s)	2524
AccB1I	GGYRCC	1 cut(s)	2110
AccB7I	CCANNNNNTGG	2 cut(s)	1042, 2632
AccBSI	CCGCTC	1 cut(s)	2795
AccI	GTMKAC	5 cut(s)	923, 1157, 1389, 1734, 1846
AciI	CCGC	9 cut(s)	569, 957, 1302, 1446, 1776, 1947, 2035, 2793, 3190
AcoI	YGGCCR	1 cut(s)	1033
AcsI	RAATTY	4 cut(s)	1231, 1876, 2354, 2456
AcuI	CTGAAG	7 cut(s)	375, 1041, 1479, 1922, 2117, 2454, 3057
AcyI	GRCGYC	2 cut(s)	23, 2521
AfaI	GTAC	3 cut(s)	933, 3125, 3261
AflII	CTTAAG	1 cut(s)	107
AflIII	ACRYGT	3 cut(s)	603, 1252, 3169
AhdI	GACNNNNNGTC	1 cut(s)	316
AjiI	CACGTC	2 cut(s)	272, 1660
AjnI	CCWGG	5 cut(s)	224, 643, 1160, 2476, 3115
AjuI	GAANNNNNNNTTGG	4 cut(s)	1014, 1046, 1449, 1481
Alw21I	GWGCWC	2 cut(s)	1475, 1481
Alw26I	GTCTC	6 cut(s)	789, 801, 1350, 2377, 2856, 2862
AlwNI	CAGNNNCTG	2 cut(s)	1212, 2477
Ama87I	CYCGRG	2 cut(s)	1474, 2496
AoxI	GGCC	6 cut(s)	1033, 1274, 1348, 1654, 1852, 2169
ApeKI	GCWGC	7 cut(s)	241, 1421, 1583, 1949, 2765, 2891, 3032
ApoI	RAATTY	4 cut(s)	1231, 1876, 2354, 2456
ArsI	GACNNNNNNTTYG	2 cut(s)	2049, 2081
Asp700I	GAANNNNTTC	1 cut(s)	2459
AspLEI	GCGC	1 cut(s)	246
AspS9I	GGNCC	9 cut(s)	47, 414, 1216, 1274, 1332, 1348, 1654, 1984, 2979
AsuC2I	CCSGG	4 cut(s)	472, 2402, 2497, 2498
AsuII	TTCGAA	1 cut(s)	155
AsuNHI	GCTAGC	1 cut(s)	2284
AvaI	CYCGRG	2 cut(s)	1474, 2496
AvaII	GGWCC	6 cut(s)	47, 414, 1216, 1332, 1984, 2979
BalI	TGGCCA	1 cut(s)	1035
BamHI	GGATCC	1 cut(s)	2182
BanI	GGYRCC	1 cut(s)	2110
BanII	GRGCYC	6 cut(s)	533, 569, 1475, 1481, 2310, 2396
BarI	GAAGNNNNNNTAC	2 cut(s)	1477, 1509
BbsI	GAAGAC	4 cut(s)	539, 1397, 1952, 3309
Bbv12I	GWGCWC	2 cut(s)	1475, 1481
BbvI	GCAGC	7 cut(s)	253, 1433, 1595, 1961, 2777, 2878, 3019
BceAI	ACGGC	3 cut(s)	10, 1753, 1992
BcgI	CGANNNNNNTGC	2 cut(s)	1751, 1785
BciT130I	CCWGG	5 cut(s)	226, 645, 1162, 2478, 3117
BciVI	GTATCC	2 cut(s)	1242, 2257
BclI	TGATCA	1 cut(s)	2778
BcnI	CCSGG	4 cut(s)	472, 2402, 2497, 2498
BcoDI	GTCTC	6 cut(s)	789, 801, 1350, 2377, 2856, 2862
BfaI	CTAG	9 cut(s)	1380, 1482, 1850, 2268, 2285, 2289, 2526, 2729, 2739
BfmI	CTRYAG	1 cut(s)	927
BfrI	CTTAAG	1 cut(s)	107
BfuI	GTATCC	2 cut(s)	1242, 2257
BglI	GCCNNNNNGGC	1 cut(s)	2314
BglII	AGATCT	1 cut(s)	2645
BisI	GCNGC	9 cut(s)	242, 1422, 1446, 1584, 1950, 2036, 2766, 2892, 3033
BlsI	GCNGC	9 cut(s)	243, 1423, 1447, 1585, 1951, 2037, 2767, 2893, 3034
BmcAI	AGTACT	1 cut(s)	933
Bme1390I	CCNGG	9 cut(s)	226, 472, 645, 1162, 2402, 2478, 2497, 2498, 3117
Bme18I	GGWCC	6 cut(s)	47, 414, 1216, 1332, 1984, 2979
BmeRI	GACNNNNNGTC	1 cut(s)	316
BmeT110I	CYCGRG	2 cut(s)	1474, 2496
BmgBI	CACGTC	2 cut(s)	272, 1660
BmgT120I	GGNCC	9 cut(s)	47, 414, 1216, 1274, 1332, 1348, 1654, 1984, 2979
BmrFI	CCNGG	9 cut(s)	226, 472, 645, 1162, 2402, 2478, 2497, 2498, 3117
BmrI	ACTGGG	1 cut(s)	1222
BmsI	GCATC	6 cut(s)	718, 1066, 1852, 1982, 2227, 2747
BmtI	GCTAGC	1 cut(s)	2288
BmuI	ACTGGG	1 cut(s)	1222
BoxI	GACNNNNGTC	2 cut(s)	1530, 3309
BpiI	GAAGAC	4 cut(s)	539, 1397, 1952, 3309
BplI	GAGNNNNNCTC	2 cut(s)	1376, 1408
BpmI	CTGGAG	2 cut(s)	702, 3168
Bpu10I	CCTNAGC	2 cut(s)	2621, 3142
Bpu14I	TTCGAA	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	2634
BpuMI	CCSGG	4 cut(s)	472, 2402, 2497, 2498
BsaHI	GRCGYC	2 cut(s)	23, 2521
BsaXI	ACNNNNNCTCC	2 cut(s)	2536, 2566
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	7 cut(s)	50, 327, 1217, 1987, 2700, 2877, 3282
Bse3DI	GCAATG	2 cut(s)	514, 2617
BseBI	CCWGG	5 cut(s)	226, 645, 1162, 2478, 3117
BseGI	GGATG	7 cut(s)	440, 733, 1060, 1259, 1867, 1986, 2599
BseMI	GCAATG	2 cut(s)	514, 2617
BseMII	CTCAG	4 cut(s)	267, 702, 1803, 2478
BseNI	ACTGG	7 cut(s)	50, 327, 1217, 1987, 2700, 2877, 3282
BseXI	GCAGC	7 cut(s)	253, 1433, 1595, 1961, 2777, 2878, 3019
BseYI	CCCAGC	1 cut(s)	1304
BsgI	GTGCAG	1 cut(s)	1152
BshFI	GGCC	6 cut(s)	1035, 1276, 1350, 1656, 1854, 2171
BshNI	GGYRCC	1 cut(s)	2110
BsiHKAI	GWGCWC	2 cut(s)	1475, 1481
BsiHKCI	CYCGRG	2 cut(s)	1474, 2496
BsiSI	CCGG	5 cut(s)	45, 472, 2401, 2497, 3184
BslFI	GGGAC	7 cut(s)	1202, 1203, 1345, 2077, 2479, 2945, 2992
BsmAI	GTCTC	6 cut(s)	789, 801, 1350, 2377, 2856, 2862
BsmBI	CGTCTC	2 cut(s)	801, 2862
BsmFI	GGGAC	7 cut(s)	1202, 1203, 1345, 2077, 2479, 2945, 2992
BsnI	GGCC	6 cut(s)	1035, 1276, 1350, 1656, 1854, 2171
BsoBI	CYCGRG	2 cut(s)	1474, 2496
Bsp119I	TTCGAA	1 cut(s)	155
Bsp1286I	GDGCHC	6 cut(s)	533, 569, 1475, 1481, 2310, 2396
Bsp1407I	TGTACA	1 cut(s)	3123
Bsp19I	CCATGG	5 cut(s)	772, 1036, 1351, 1855, 2172
BspACI	CCGC	9 cut(s)	569, 957, 1302, 1446, 1776, 1947, 2035, 2793, 3190
BspANI	GGCC	6 cut(s)	1035, 1276, 1350, 1656, 1854, 2171
BspCNI	CTCAG	4 cut(s)	268, 701, 1804, 2477
BspHI	TCATGA	1 cut(s)	784
BspOI	GCTAGC	1 cut(s)	2288
BspQI	GCTCTTC	1 cut(s)	1498
BspT104I	TTCGAA	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	2110
BspTI	CTTAAG	1 cut(s)	107
BsrBI	CCGCTC	1 cut(s)	2795
BsrDI	GCAATG	2 cut(s)	514, 2617
BsrFI	RCCGGY	1 cut(s)	44
BsrGI	TGTACA	1 cut(s)	3123
BsrI	ACTGG	7 cut(s)	50, 327, 1217, 1987, 2700, 2877, 3282
BssAI	RCCGGY	1 cut(s)	44
BssNAI	GTATAC	1 cut(s)	1158
BssNI	GRCGYC	2 cut(s)	23, 2521
BssT1I	CCWWGG	6 cut(s)	772, 1036, 1351, 1855, 2172, 2227
Bst1107I	GTATAC	1 cut(s)	1158
Bst2UI	CCWGG	5 cut(s)	226, 645, 1162, 2478, 3117
Bst4CI	ACNGT	9 cut(s)	554, 1414, 1636, 2054, 2327, 2845, 2918, 2927, 2959
Bst6I	CTCTTC	4 cut(s)	1498, 1758, 2206, 3232
BstACI	GRCGYC	2 cut(s)	23, 2521
BstAFI	CTTAAG	1 cut(s)	107
BstAUI	TGTACA	1 cut(s)	3123
BstBI	TTCGAA	1 cut(s)	155
BstC8I	GCNNGC	7 cut(s)	72, 569, 955, 1774, 2286, 2396, 3021
BstDSI	CCRYGG	5 cut(s)	772, 1036, 1351, 1855, 2172
BstENI	CCTNNNNNAGG	1 cut(s)	627
BstF5I	GGATG	7 cut(s)	440, 733, 1060, 1259, 1867, 1986, 2599
BstHHI	GCGC	1 cut(s)	246
BstMAI	GTCTC	6 cut(s)	789, 801, 1350, 2377, 2856, 2862
BstMWI	GCNNNNNNNGC	9 cut(s)	80, 1778, 2076, 2108, 2314, 2498, 3029, 3038, 3152
BstNI	CCWGG	5 cut(s)	226, 645, 1162, 2478, 3117
BstNSI	RCATGY	6 cut(s)	607, 971, 1113, 1256, 1709, 1932
BstPAI	GACNNNNGTC	2 cut(s)	1530, 3309
BstSCI	CCNGG	9 cut(s)	224, 470, 643, 1160, 2400, 2476, 2495, 2496, 3115
BstSFI	CTRYAG	1 cut(s)	927
BstV1I	GCAGC	7 cut(s)	253, 1433, 1595, 1961, 2777, 2878, 3019
BstV2I	GAAGAC	4 cut(s)	539, 1397, 1952, 3309
BstX2I	RGATCY	5 cut(s)	31, 2182, 2270, 2645, 3160
BstXI	CCANNNNNNTGG	2 cut(s)	779, 869
BstYI	RGATCY	5 cut(s)	31, 2182, 2270, 2645, 3160
BstZ17I	GTATAC	1 cut(s)	1158
BsuI	GTATCC	2 cut(s)	1242, 2257
BsuRI	GGCC	6 cut(s)	1035, 1276, 1350, 1656, 1854, 2171
BtgI	CCRYGG	5 cut(s)	772, 1036, 1351, 1855, 2172
BtgZI	GCGATG	1 cut(s)	1249
BtrI	CACGTC	2 cut(s)	272, 1660
BtsCI	GGATG	7 cut(s)	440, 733, 1060, 1259, 1867, 1986, 2599
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	6 cut(s)	57, 78, 320, 1210, 1410, 3289
Cac8I	GCNNGC	7 cut(s)	72, 569, 955, 1774, 2286, 2396, 3021
CaiI	CAGNNNCTG	2 cut(s)	1212, 2477
CciI	TCATGA	1 cut(s)	784
CfoI	GCGC	1 cut(s)	246
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	9 cut(s)	47, 414, 1216, 1274, 1332, 1348, 1654, 1984, 2979
Cfr9I	CCCGGG	1 cut(s)	2496
CseI	GACGC	2 cut(s)	31, 2481
CsiI	ACCWGGT	1 cut(s)	3115
Csp6I	GTAC	3 cut(s)	932, 3124, 3260
CspCI	CAANNNNNGTGG	4 cut(s)	1078, 1113, 1873, 1908
CviQI	GTAC	3 cut(s)	932, 3124, 3260
DrdI	GACNNNNNNGTC	1 cut(s)	2848
DriI	GACNNNNNGTC	1 cut(s)	316
DseDI	GACNNNNNNGTC	1 cut(s)	2848
EaeI	YGGCCR	1 cut(s)	1033
Eam1104I	CTCTTC	4 cut(s)	1498, 1758, 2206, 3232
Eam1105I	GACNNNNNGTC	1 cut(s)	316
EarI	CTCTTC	4 cut(s)	1498, 1758, 2206, 3232
Ecl136II	GAGCTC	2 cut(s)	1473, 1479
Eco130I	CCWWGG	6 cut(s)	772, 1036, 1351, 1855, 2172, 2227
Eco24I	GRGCYC	6 cut(s)	533, 569, 1475, 1481, 2310, 2396
Eco32I	GATATC	2 cut(s)	266, 387
Eco47I	GGWCC	6 cut(s)	47, 414, 1216, 1332, 1984, 2979
Eco53kI	GAGCTC	2 cut(s)	1473, 1479
Eco57I	CTGAAG	7 cut(s)	375, 1041, 1479, 1922, 2117, 2454, 3057
Eco88I	CYCGRG	2 cut(s)	1474, 2496
EcoICRI	GAGCTC	2 cut(s)	1473, 1479
EcoNI	CCTNNNNNAGG	1 cut(s)	627
EcoO109I	RGGNCCY	2 cut(s)	1216, 1332
EcoRI	GAATTC	1 cut(s)	2354
EcoRII	CCWGG	5 cut(s)	224, 643, 1160, 2476, 3115
EcoRV	GATATC	2 cut(s)	266, 387
EcoT14I	CCWWGG	6 cut(s)	772, 1036, 1351, 1855, 2172, 2227
EcoT38I	GRGCYC	6 cut(s)	533, 569, 1475, 1481, 2310, 2396
ErhI	CCWWGG	6 cut(s)	772, 1036, 1351, 1855, 2172, 2227
Esp3I	CGTCTC	2 cut(s)	801, 2862
FalI	AAGNNNNNCTT	8 cut(s)	469, 501, 988, 1020, 1014, 1046, 2444, 2476
FaqI	GGGAC	7 cut(s)	1202, 1203, 1345, 2077, 2479, 2945, 2992
FauI	CCCGC	1 cut(s)	576
FauNDI	CATATG	1 cut(s)	559
FbaI	TGATCA	1 cut(s)	2778
FblI	GTMKAC	5 cut(s)	923, 1157, 1389, 1734, 1846
Fnu4HI	GCNGC	9 cut(s)	242, 1422, 1446, 1584, 1950, 2036, 2766, 2892, 3033
FokI	GGATG	7 cut(s)	427, 740, 1047, 1246, 1874, 1993, 2606
FriOI	GRGCYC	6 cut(s)	533, 569, 1475, 1481, 2310, 2396
Fsp4HI	GCNGC	9 cut(s)	242, 1422, 1446, 1584, 1950, 2036, 2766, 2892, 3033
FspBI	CTAG	9 cut(s)	1380, 1482, 1850, 2268, 2285, 2289, 2526, 2729, 2739
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	9 cut(s)	242, 1422, 1446, 1584, 1950, 2036, 2766, 2892, 3033
GsaI	CCCAGC	1 cut(s)	1308
GsuI	CTGGAG	2 cut(s)	702, 3168
HaeIII	GGCC	6 cut(s)	1035, 1276, 1350, 1656, 1854, 2171
HapII	CCGG	5 cut(s)	45, 472, 2401, 2497, 3184
HgaI	GACGC	2 cut(s)	31, 2481
HhaI	GCGC	1 cut(s)	246
Hin1I	GRCGYC	2 cut(s)	23, 2521
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HincII	GTYRAC	4 cut(s)	586, 1735, 2224, 2541
HindII	GTYRAC	4 cut(s)	586, 1735, 2224, 2541
HindIII	AAGCTT	1 cut(s)	912
HpaII	CCGG	5 cut(s)	45, 472, 2401, 2497, 3184
Hpy99I	CGWCG	4 cut(s)	31, 769, 1739, 2279
HpyCH4III	ACNGT	9 cut(s)	554, 1414, 1636, 2054, 2327, 2845, 2918, 2927, 2959
HpyCH4IV	ACGT	5 cut(s)	271, 810, 1659, 2521, 3169
HpyF10VI	GCNNNNNNNGC	9 cut(s)	80, 1778, 2076, 2108, 2314, 2498, 3029, 3038, 3152
HpySE526I	ACGT	5 cut(s)	271, 810, 1659, 2521, 3169
Hsp92I	GRCGYC	2 cut(s)	23, 2521
HspAI	GCGC	1 cut(s)	244
KflI	GGGWCCC	1 cut(s)	1216
Ksp22I	TGATCA	1 cut(s)	2778
LguI	GCTCTTC	1 cut(s)	1498
LmnI	GCTCC	4 cut(s)	95, 485, 1470, 2305
Lsp1109I	GCAGC	7 cut(s)	253, 1433, 1595, 1961, 2777, 2878, 3019
LweI	GCATC	6 cut(s)	718, 1066, 1852, 1982, 2227, 2747
MabI	ACCWGGT	1 cut(s)	3115
MaeI	CTAG	9 cut(s)	1380, 1482, 1850, 2268, 2285, 2289, 2526, 2729, 2739
MaeII	ACGT	5 cut(s)	271, 810, 1659, 2521, 3169
MbiI	CCGCTC	1 cut(s)	2795
MfeI	CAATTG	4 cut(s)	2041, 2241, 2733, 2798
MflI	RGATCY	5 cut(s)	31, 2182, 2270, 2645, 3160
MhlI	GDGCHC	6 cut(s)	533, 569, 1475, 1481, 2310, 2396
MlsI	TGGCCA	1 cut(s)	1035
MluNI	TGGCCA	1 cut(s)	1035
MlyI	GAGTC	5 cut(s)	929, 1385, 1540, 1904, 2215
MmeI	TCCRAC	9 cut(s)	9, 850, 861, 1748, 2241, 2283, 2298, 2459, 2809
Mox20I	TGGCCA	1 cut(s)	1035
MroXI	GAANNNNTTC	1 cut(s)	2459
MscI	TGGCCA	1 cut(s)	1035
MseI	TTAA	6 cut(s)	87, 108, 1799, 2430, 2912, 3316
MslI	CAYNNNNRTG	5 cut(s)	789, 1128, 1197, 1710, 1860
Msp20I	TGGCCA	1 cut(s)	1035
MspA1I	CMGCKG	3 cut(s)	1289, 1304, 1952
MspCI	CTTAAG	1 cut(s)	107
MspI	CCGG	5 cut(s)	45, 472, 2401, 2497, 3184
MspR9I	CCNGG	9 cut(s)	226, 472, 645, 1162, 2402, 2478, 2497, 2498, 3117
MunI	CAATTG	4 cut(s)	2041, 2241, 2733, 2798
MvaI	CCWGG	5 cut(s)	226, 645, 1162, 2478, 3117
MwoI	GCNNNNNNNGC	9 cut(s)	80, 1778, 2076, 2108, 2314, 2498, 3029, 3038, 3152
NciI	CCSGG	4 cut(s)	472, 2402, 2497, 2498
NcoI	CCATGG	5 cut(s)	772, 1036, 1351, 1855, 2172
NdeI	CATATG	1 cut(s)	559
NheI	GCTAGC	1 cut(s)	2284
NmuCI	GTSAC	7 cut(s)	52, 318, 704, 1208, 1294, 1523, 1547
NspI	RCATGY	6 cut(s)	607, 971, 1113, 1256, 1709, 1932
NspV	TTCGAA	1 cut(s)	155
PaeR7I	CTCGAG	1 cut(s)	1474
PagI	TCATGA	1 cut(s)	784
PciI	ACATGT	2 cut(s)	603, 1252
PciSI	GCTCTTC	1 cut(s)	1498
PdmI	GAANNNNTTC	1 cut(s)	2459
PfeI	GAWTC	9 cut(s)	164, 419, 896, 1016, 1046, 2292, 2747, 2939, 3051
PflFI	GACNNNGTC	1 cut(s)	25
PflMI	CCANNNNNTGG	2 cut(s)	1042, 2632
PfoI	TCCNGGA	1 cut(s)	224
PkrI	GCNGC	9 cut(s)	243, 1423, 1447, 1585, 1951, 2037, 2767, 2893, 3034
PleI	GAGTC	5 cut(s)	928, 1385, 1539, 1903, 2214
PpsI	GAGTC	5 cut(s)	928, 1385, 1539, 1903, 2214
PpuMI	RGGWCCY	2 cut(s)	1216, 1332
PscI	ACATGT	2 cut(s)	603, 1252
PshAI	GACNNNNGTC	2 cut(s)	1530, 3309
Psp124BI	GAGCTC	2 cut(s)	1475, 1481
Psp5II	RGGWCCY	2 cut(s)	1216, 1332
Psp6I	CCWGG	5 cut(s)	224, 643, 1160, 2476, 3115
PspFI	CCCAGC	1 cut(s)	1304
PspGI	CCWGG	5 cut(s)	224, 643, 1160, 2476, 3115
PspPI	GGNCC	9 cut(s)	47, 414, 1216, 1274, 1332, 1348, 1654, 1984, 2979
PspPPI	RGGWCCY	2 cut(s)	1216, 1332
PspXI	VCTCGAGB	1 cut(s)	1474
PstNI	CAGNNNCTG	2 cut(s)	1212, 2477
PsuI	RGATCY	5 cut(s)	31, 2182, 2270, 2645, 3160
PsyI	GACNNNGTC	1 cut(s)	25
PvuII	CAGCTG	2 cut(s)	1289, 1952
RsaI	GTAC	3 cut(s)	933, 3125, 3261
RsaNI	GTAC	3 cut(s)	932, 3124, 3260
RseI	CAYNNNNRTG	5 cut(s)	789, 1128, 1197, 1710, 1860
SacI	GAGCTC	2 cut(s)	1475, 1481
SalI	GTCGAC	1 cut(s)	1733
SapI	GCTCTTC	1 cut(s)	1498
SaqAI	TTAA	6 cut(s)	87, 108, 1799, 2430, 2912, 3316
SatI	GCNGC	9 cut(s)	242, 1422, 1446, 1584, 1950, 2036, 2766, 2892, 3033
Sau96I	GGNCC	9 cut(s)	47, 414, 1216, 1274, 1332, 1348, 1654, 1984, 2979
ScaI	AGTACT	1 cut(s)	933
SchI	GAGTC	5 cut(s)	929, 1385, 1540, 1904, 2215
ScrFI	CCNGG	9 cut(s)	226, 472, 645, 1162, 2402, 2478, 2497, 2498, 3117
SduI	GDGCHC	6 cut(s)	533, 569, 1475, 1481, 2310, 2396
SexAI	ACCWGGT	1 cut(s)	3115
SfaNI	GCATC	6 cut(s)	718, 1066, 1852, 1982, 2227, 2747
SfcI	CTRYAG	1 cut(s)	927
Sfr274I	CTCGAG	1 cut(s)	1474
SfuI	TTCGAA	1 cut(s)	155
SinI	GGWCC	6 cut(s)	47, 414, 1216, 1332, 1984, 2979
SlaI	CTCGAG	1 cut(s)	1474
SmaI	CCCGGG	1 cut(s)	2498
SmiMI	CAYNNNNRTG	5 cut(s)	789, 1128, 1197, 1710, 1860
SmlI	CTYRAG	3 cut(s)	107, 1474, 2649
SmoI	CTYRAG	3 cut(s)	107, 1474, 2649
SsiI	CCGC	9 cut(s)	569, 957, 1302, 1446, 1776, 1947, 2035, 2793, 3190
SspI	AATATT	2 cut(s)	949, 1096
SspMI	CTAG	9 cut(s)	1380, 1482, 1850, 2268, 2285, 2289, 2526, 2729, 2739
SstI	GAGCTC	2 cut(s)	1475, 1481
StyD4I	CCNGG	9 cut(s)	224, 470, 643, 1160, 2400, 2476, 2495, 2496, 3115
StyI	CCWWGG	6 cut(s)	772, 1036, 1351, 1855, 2172, 2227
TaaI	ACNGT	9 cut(s)	554, 1414, 1636, 2054, 2327, 2845, 2918, 2927, 2959
TaiI	ACGT	5 cut(s)	274, 813, 1662, 2524, 3172
TaqII	GACCGA	2 cut(s)	431, 2526
TatI	WGTACW	2 cut(s)	931, 3123
TauI	GCSGC	2 cut(s)	1448, 2038
TfiI	GAWTC	9 cut(s)	164, 419, 896, 1016, 1046, 2292, 2747, 2939, 3051
Tru1I	TTAA	6 cut(s)	87, 108, 1799, 2430, 2912, 3316
Tru9I	TTAA	6 cut(s)	87, 108, 1799, 2430, 2912, 3316
TscAI	CASTG	6 cut(s)	57, 85, 327, 1217, 1417, 3289
TseFI	GTSAC	7 cut(s)	52, 318, 704, 1208, 1294, 1523, 1547
TseI	GCWGC	7 cut(s)	241, 1421, 1583, 1949, 2765, 2891, 3032
Tsp45I	GTSAC	7 cut(s)	52, 318, 704, 1208, 1294, 1523, 1547
TspGWI	ACGGA	7 cut(s)	27, 418, 2195, 2292, 2683, 2844, 3164
TspMI	CCCGGG	1 cut(s)	2496
TspRI	CASTG	6 cut(s)	57, 85, 327, 1217, 1417, 3289
Tth111I	GACNNNGTC	1 cut(s)	25
Van91I	CCANNNNNTGG	2 cut(s)	1042, 2632
Vha464I	CTTAAG	1 cut(s)	107
VpaK11BI	GGWCC	6 cut(s)	47, 414, 1216, 1332, 1984, 2979
XagI	CCTNNNNNAGG	1 cut(s)	627
XapI	RAATTY	4 cut(s)	1231, 1876, 2354, 2456
XceI	RCATGY	6 cut(s)	607, 971, 1113, 1256, 1709, 1932
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2317
XhoI	CTCGAG	1 cut(s)	1474
XmaI	CCCGGG	1 cut(s)	2496
XmiI	GTMKAC	5 cut(s)	923, 1157, 1389, 1734, 1846
XmnI	GAANNNNTTC	1 cut(s)	2459
XspI	CTAG	9 cut(s)	1380, 1482, 1850, 2268, 2285, 2289, 2526, 2729, 2739
ZraI	GACGTC	1 cut(s)	2522
ZrmI	AGTACT	1 cut(s)	933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.