Protein present in Fab1, YOTB, Vac1, and EEA1
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G12350 AT5G19420 AT5G19420 AT5G19420 |
| fragaria_vesca | FvH4_7g02960 FvH4_7g02960 FvH4_7g02960 FvH4_7g02960 |
| malus_domestica | MD02G1288400.v1.1 MD07G1038100.v1.1 MD07G1038400.v1.1 MD13G1037300.v1.1 |
| prunus_persica | Prupe.2G034600_v2.0.a1 Prupe.2G034600_v2.0.a1 Prupe.2G034600_v2.0.a1 |
| pyrus_communis | pycom02g24410 pycom05g01140 pycom07g02640 pycom07g02670 pycom16g06500 |
| rosa_chinensis | RchiOBHm_Chr1g0323931 |
| rosa_laevigata | RLG00000030242 |
| rosa_multiflora | Rmu_co8261369.1_g000001 Rmu_sc0001449.1_g000001 Rmu_sc0011010.1_g000012 Rmu_sc0012343.1_g000006 Rmu_sc0012343.1_g000007 |
| rosa_roxburghii | Rroxscaffold_4G00326110 |
| rosa_rugosa | Rorug01G0040600 |
| rosa_samantha | Rh1AG058500 Rh1BG049600 Rh1CG060400 Rh1DG064400 |
| rosa_wichuraiana | Rw0G011380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 149 |
| AciI | CCGC | 1 cut(s) | 300 |
| AcsI | RAATTY | 1 cut(s) | 22 |
| AcuI | CTGAAG | 1 cut(s) | 267 |
| AcvI | CACGTG | 1 cut(s) | 284 |
| AfaI | GTAC | 2 cut(s) | 86, 139 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 155 |
| AgsI | TTSAA | 1 cut(s) | 130 |
| AluBI | AGCT | 1 cut(s) | 245 |
| AluI | AGCT | 1 cut(s) | 245 |
| AoxI | GGCC | 1 cut(s) | 166 |
| ApoI | RAATTY | 1 cut(s) | 22 |
| AseI | ATTAAT | 1 cut(s) | 275 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 72 |
| AsuHPI | GGTGA | 1 cut(s) | 283 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 309, 341 |
| BbrPI | CACGTG | 1 cut(s) | 284 |
| BbsI | GAAGAC | 1 cut(s) | 118 |
| BciVI | GTATCC | 1 cut(s) | 170 |
| BfaI | CTAG | 1 cut(s) | 347 |
| BfuAI | ACCTGC | 1 cut(s) | 149 |
| BfuI | GTATCC | 1 cut(s) | 170 |
| BpiI | GAAGAC | 1 cut(s) | 118 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 147, 179 |
| BsaAI | YACGTR | 1 cut(s) | 284 |
| BsaBI | GATNNNNATC | 1 cut(s) | 224 |
| BsaJI | CCNNGG | 1 cut(s) | 163 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 155 |
| Bse1I | ACTGG | 2 cut(s) | 66, 265 |
| Bse8I | GATNNNNATC | 1 cut(s) | 224 |
| BseDI | CCNNGG | 1 cut(s) | 163 |
| BseGI | GGATG | 1 cut(s) | 70 |
| BseJI | GATNNNNATC | 1 cut(s) | 224 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 155 |
| BseMII | CTCAG | 2 cut(s) | 102, 323 |
| BseNI | ACTGG | 2 cut(s) | 66, 265 |
| BseRI | GAGGAG | 1 cut(s) | 113 |
| BshFI | GGCC | 1 cut(s) | 168 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 155 |
| BsnI | GGCC | 1 cut(s) | 168 |
| Bsp143I | GATC | 1 cut(s) | 349 |
| BspACI | CCGC | 1 cut(s) | 300 |
| BspANI | GGCC | 1 cut(s) | 168 |
| BspCNI | CTCAG | 2 cut(s) | 101, 324 |
| BspMI | ACCTGC | 1 cut(s) | 149 |
| BsrI | ACTGG | 2 cut(s) | 66, 265 |
| BssECI | CCNNGG | 1 cut(s) | 163 |
| BssMI | GATC | 1 cut(s) | 349 |
| BstBAI | YACGTR | 1 cut(s) | 284 |
| BstDEI | CTNAG | 2 cut(s) | 88, 332 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 153 |
| BstF5I | GGATG | 1 cut(s) | 70 |
| BstKTI | GATC | 1 cut(s) | 352 |
| BstMBI | GATC | 1 cut(s) | 349 |
| BstV2I | GAAGAC | 1 cut(s) | 118 |
| BsuI | GTATCC | 1 cut(s) | 170 |
| BsuRI | GGCC | 1 cut(s) | 168 |
| BtsCI | GGATG | 1 cut(s) | 70 |
| BveI | ACCTGC | 1 cut(s) | 149 |
| CseI | GACGC | 1 cut(s) | 14 |
| Csp6I | GTAC | 2 cut(s) | 85, 138 |
| CviJI | RGCY | 3 cut(s) | 39, 168, 245 |
| CviKI_1 | RGCY | 3 cut(s) | 39, 168, 245 |
| CviQI | GTAC | 2 cut(s) | 85, 138 |
| DdeI | CTNAG | 2 cut(s) | 88, 332 |
| DpnI | GATC | 1 cut(s) | 351 |
| DpnII | GATC | 1 cut(s) | 349 |
| Eco57I | CTGAAG | 1 cut(s) | 267 |
| Eco72I | CACGTG | 1 cut(s) | 284 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 153 |
| FaiI | YATR | 7 cut(s) | 54, 82, 108, 199, 201, 203, 225 |
| FokI | GGATG | 1 cut(s) | 77 |
| FspBI | CTAG | 1 cut(s) | 347 |
| HaeIII | GGCC | 1 cut(s) | 168 |
| HgaI | GACGC | 1 cut(s) | 14 |
| HinfI | GANTC | 2 cut(s) | 68, 310 |
| HphI | GGTGA | 1 cut(s) | 283 |
| Hpy166II | GTNNAC | 1 cut(s) | 258 |
| Hpy188I | TCNGA | 2 cut(s) | 155, 333 |
| Hpy188III | TCNNGA | 2 cut(s) | 130, 314 |
| Hpy8I | GTNNAC | 1 cut(s) | 258 |
| HpyAV | CCTTC | 1 cut(s) | 298 |
| HpyCH4IV | ACGT | 1 cut(s) | 283 |
| HpyCH4V | TGCA | 1 cut(s) | 144 |
| HpyF3I | CTNAG | 2 cut(s) | 88, 332 |
| HpySE526I | ACGT | 1 cut(s) | 283 |
| Kzo9I | GATC | 1 cut(s) | 349 |
| LpnPI | CCDG | 7 cut(s) | 21, 47, 75, 154, 182, 246, 307 |
| MaeI | CTAG | 1 cut(s) | 347 |
| MaeII | ACGT | 1 cut(s) | 283 |
| MaeIII | GTNAC | 1 cut(s) | 324 |
| MalI | GATC | 1 cut(s) | 351 |
| MboI | GATC | 1 cut(s) | 349 |
| MboII | GAAGA | 1 cut(s) | 118 |
| MluCI | AATT | 3 cut(s) | 22, 45, 133 |
| MnlI | CCTC | 5 cut(s) | 4, 91, 149, 173, 327 |
| MroXI | GAANNNNTTC | 1 cut(s) | 72 |
| MseI | TTAA | 2 cut(s) | 111, 275 |
| NdeII | GATC | 1 cut(s) | 349 |
| NmeAIII | GCCGAG | 1 cut(s) | 144 |
| PdmI | GAANNNNTTC | 1 cut(s) | 72 |
| PfeI | GAWTC | 2 cut(s) | 68, 310 |
| PmaCI | CACGTG | 1 cut(s) | 284 |
| PmlI | CACGTG | 1 cut(s) | 284 |
| Ppu21I | YACGTR | 1 cut(s) | 284 |
| PshBI | ATTAAT | 1 cut(s) | 275 |
| PspCI | CACGTG | 1 cut(s) | 284 |
| RsaI | GTAC | 2 cut(s) | 86, 139 |
| RsaNI | GTAC | 2 cut(s) | 85, 138 |
| SaqAI | TTAA | 2 cut(s) | 111, 275 |
| Sau3AI | GATC | 1 cut(s) | 349 |
| SetI | ASST | 6 cut(s) | 143, 151, 160, 214, 247, 286 |
| Sse9I | AATT | 3 cut(s) | 22, 45, 133 |
| SsiI | CCGC | 1 cut(s) | 300 |
| SspMI | CTAG | 1 cut(s) | 347 |
| TaiI | ACGT | 1 cut(s) | 286 |
| TasI | AATT | 3 cut(s) | 22, 45, 133 |
| TfiI | GAWTC | 2 cut(s) | 68, 310 |
| Tru1I | TTAA | 2 cut(s) | 111, 275 |
| Tru9I | TTAA | 2 cut(s) | 111, 275 |
| TspDTI | ATGAA | 3 cut(s) | 69, 81, 255 |
| VspI | ATTAAT | 1 cut(s) | 275 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 153 |
| XapI | RAATTY | 1 cut(s) | 22 |
| XmnI | GAANNNNTTC | 1 cut(s) | 72 |
| XspI | CTAG | 1 cut(s) | 347 |