Rmu_sc0012343.1_g000006

Protein present in Fab1, YOTB, Vac1, and EEA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012343.1
OG0003738
Physical Location & Seq
Forward (+)
34073 .. 36643
2571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012343.1_g000006.1.cds

Sequence Viewer

Length: 255 bp
atggagaggatgactgccgatcaggcgaaggcgggcccactcgaaagggacattcatttggccatcactgctctaaaaaagggttcacaattactgaagtatggacgcagaggaaagcccaaattttgtcctttcagactgtccaatgatgaatctgttctgacatggtactcaggcaaagatgagaaatatgttaaactaagccatgtctctagaattatacctggccaacgcactgtaagttcttcatgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

84

Amino Acids

9.48

Weight (kDa)

9.88

Isoelectric Point (pI)

25.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 32
AcoI YGGCCR 2 cut(s) 60, 226
AcsI RAATTY 1 cut(s) 122
AcuI CTGAAG 1 cut(s) 116
AfaI GTAC 1 cut(s) 170
AjnI CCWGG 1 cut(s) 223
Alw26I GTCTC 1 cut(s) 214
AoxI GGCC 3 cut(s) 34, 60, 226
ApaI GGGCCC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 122
Asp700I GAANNNNTTC 1 cut(s) 156
AspS9I GGNCC 2 cut(s) 34, 35
BaeGI GKGCMC 1 cut(s) 38
BalI TGGCCA 2 cut(s) 62, 228
BanII GRGCYC 1 cut(s) 38
BccI CCATC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 225
BcoDI GTCTC 1 cut(s) 214
BfaI CTAG 1 cut(s) 213
BglI GCCNNNNNGGC 1 cut(s) 23
Bme1390I CCNGG 1 cut(s) 225
BmgT120I GGNCC 2 cut(s) 34, 35
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 1 cut(s) 225
BseBI CCWGG 1 cut(s) 225
BseGI GGATG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 186
BseSI GKGCMC 1 cut(s) 38
BshFI GGCC 3 cut(s) 36, 62, 228
BslFI GGGAC 1 cut(s) 62
BsmAI GTCTC 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 62
BsnI GGCC 3 cut(s) 36, 62, 228
Bsp120I GGGCCC 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 1 cut(s) 19
BspACI CCGC 1 cut(s) 32
BspANI GGCC 3 cut(s) 36, 62, 228
BspCNI CTCAG 1 cut(s) 185
BspLI GGNNCC 1 cut(s) 36
BssMI GATC 1 cut(s) 19
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 2 cut(s) 141, 238
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 2 cut(s) 172, 200
BstF5I GGATG 1 cut(s) 15
BstKTI GATC 1 cut(s) 22
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 1 cut(s) 19
BstMWI GCNNNNNNNGC 2 cut(s) 23, 68
BstNI CCWGG 1 cut(s) 225
BstSCI CCNGG 1 cut(s) 223
BstSLI GKGCMC 1 cut(s) 38
BsuRI GGCC 3 cut(s) 36, 62, 228
BtsCI GGATG 1 cut(s) 15
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 2 cut(s) 66, 234
Cac8I GCNNGC 1 cut(s) 34
Cfr13I GGNCC 2 cut(s) 34, 35
CseI GACGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 169
CviAII CATG 3 cut(s) 165, 206, 249
CviJI RGCY 5 cut(s) 36, 62, 118, 204, 228
CviKI_1 RGCY 5 cut(s) 36, 62, 118, 204, 228
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 2 cut(s) 172, 200
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
EaeI YGGCCR 2 cut(s) 60, 226
Eco24I GRGCYC 1 cut(s) 38
Eco57I CTGAAG 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 38
FaeI CATG 3 cut(s) 168, 209, 252
FaiI YATR 6 cut(s) 102, 166, 192, 207, 221, 250
FaqI GGGAC 1 cut(s) 62
FatI CATG 3 cut(s) 164, 205, 248
FauI CCCGC 1 cut(s) 25
FokI GGATG 1 cut(s) 22
FriOI GRGCYC 1 cut(s) 38
FspBI CTAG 1 cut(s) 213
HaeIII GGCC 3 cut(s) 36, 62, 228
HgaI GACGC 1 cut(s) 114
Hin1II CATG 3 cut(s) 168, 209, 252
HinfI GANTC 1 cut(s) 152
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 2 cut(s) 137, 162
Hpy188III TCNNGA 1 cut(s) 213
Hpy8I GTNNAC 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 2 cut(s) 141, 238
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 68
HpyF3I CTNAG 2 cut(s) 172, 200
Hsp92II CATG 3 cut(s) 168, 209, 252
Kzo9I GATC 1 cut(s) 19
LpnPI CCDG 4 cut(s) 8, 159, 210, 237
MaeI CTAG 1 cut(s) 213
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MboII GAAGA 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 38
MlsI TGGCCA 2 cut(s) 62, 228
MluCI AATT 3 cut(s) 89, 122, 216
MluNI TGGCCA 2 cut(s) 62, 228
MnlI CCTC 1 cut(s) 104
Mox20I TGGCCA 2 cut(s) 62, 228
MroXI GAANNNNTTC 1 cut(s) 156
MscI TGGCCA 2 cut(s) 62, 228
MseI TTAA 1 cut(s) 195
Msp20I TGGCCA 2 cut(s) 62, 228
MspR9I CCNGG 1 cut(s) 225
MvaI CCWGG 1 cut(s) 225
MwoI GCNNNNNNNGC 2 cut(s) 23, 68
NdeII GATC 1 cut(s) 19
NlaIII CATG 3 cut(s) 168, 209, 252
NlaIV GGNNCC 1 cut(s) 36
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 1 cut(s) 36
PspOMI GGGCCC 1 cut(s) 34
PspPI GGNCC 2 cut(s) 34, 35
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SaqAI TTAA 1 cut(s) 195
Sau3AI GATC 1 cut(s) 19
Sau96I GGNCC 2 cut(s) 34, 35
ScrFI CCNGG 1 cut(s) 225
SduI GDGCHC 1 cut(s) 38
SetI ASST 1 cut(s) 226
SgeI CNNG 9 cut(s) 35, 45, 53, 177, 186, 218, 225, 236, 237
Sse9I AATT 3 cut(s) 89, 122, 216
SsiI CCGC 1 cut(s) 32
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 223
TaaI ACNGT 2 cut(s) 141, 238
TaqI TCGA 1 cut(s) 42
TasI AATT 3 cut(s) 89, 122, 216
TfiI GAWTC 1 cut(s) 152
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 2 cut(s) 73, 241
TspDTI ATGAA 3 cut(s) 44, 165, 237
TspRI CASTG 2 cut(s) 73, 241
XapI RAATTY 1 cut(s) 122
XbaI TCTAGA 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.