pycom07g02640

Protein present in Fab1, YOTB, Vac1, and EEA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0003738
Physical Location & Seq
Reverse (-)
2169148 .. 2172252
3105 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g02640.1

Sequence Viewer

Length: 1425 bp
ATGGTGGGCCCCAATGTCACACCACCGGTCACTCCATTTTCCACCACCACAATCCGACGGTCATCTTCTTTTTCCCGATCAACCCATTTATTCTCCTCATTTTCCACCACCGCAATCCACCGGTCACTCCTCATGTGTTATGGCTGTCGCCTTCCATTTAATTTTAAAAGAAAAAGACACAGTTGTGATAATTGTGGACTTGCGTTATGGCATTCATGCAGCAGCAAAAAATGTCTCAAGGCTTCCACGGCACCAAACCCAAACAAGCCTTATCGTGTCTGCGATAACTGTTTTGCAAAACTTCGGAAGGCCACTGAAACCAACTCTTCATCTGGGTCCGCTATTAGTACAAGAGCAAGTATGAATCAGGGATTCAACGAACTGATTGAAAACAATTTTAAAGAAATGGAAAGTGGATCTTCCAAAAGAAACAAGAAAATGGATTTCAGCAGCAATCGTGTTGTTCCCATTGCAAATGGAGTTTCTGAGCGTCGAGCACTCAATGGGACTAAATCTTTCAACCCAGTGTTCCGATCATCCAAAAAGTTTTTCTCAGCTCTTTCGGGGTTTACTCTTCCAAAAGTTGCTTGTCTCAGTCGGAGGGAAGAAGTTCTAAAATTAAAAGCTCAGGTTGAAGATCTTACTCGTAAAGCTCAACTTCGAGAAATTGAGATGGAAAAAACTGCCCAACAGTTGAAGGAGGCTCTGAAAGTAGCAGGGGAAGAAACTGTGAAGTGCAAAGCAGCAAAGGAAGTAATTAAGTCGCTCACAGCCCAAAAAGTCAGAAGGAGGGTTTGGTATCTCAAGGCTTCGCCAAAAAAAAAAGGGAAAATTTCTTTACCAATTGGAACAGCAAATGTATCGAGCAGTGAGAAAATTTCTGACGTGCCACGGGCCACTTCTAATCACACTGAAGTGGCACATTCAGAAGCAACAGCTAGGCATAAAAACAGAGGAGCAAAAACTGTAACAGCTGAATGGATTGAGCAAGATGAGCCTGGTGTATATATTACCCTAGTTTCCTTGCCTGGAGGTGTCAATGATCTCAAAAGTGTTCGCTTCAGTCGAAGGCGGTTCAGCGAGAAACAAGCAGAGCAGTGGTGGGCGGCAAATAGGGGTAGAGTATATCAGCAGTATAATGTTCCGGTGGTTAAAAAATCCGGAGGAGCAAAAGCTGAAACAGCACAAGGGGATGAATGGGTTGAGCAAGATGAGCCTGGTGTATATATTACCCTAGCTTCCTTGCCTGGTGGTGTCAAAGATCTCAAGCATGTTCGCTTCAGTCGAAAGCGGTTCAGCGAGAAACAAGCAGAGCAGTGGTGGGCGGCAAATAGGGGTAGAGTATATCAGCAGTACCATGTTCGGGCGGTTCAAAAATCCCAGTATTCCGACGAGGAGAGAAGGGTTAGCTCATTGAGCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

475

Amino Acids

53.23

Weight (kDa)

10.06

Isoelectric Point (pI)

53.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FYVE PF01363 44 - 102 9e-11 FYVE zinc finger
BRX_N PF13713 241 - 259 6.3e-06 Transcription factor BRX N-terminal domain
BRX PF08381 325 - 379 1.2e-27 Transcription factor regulating root and shoot growth via Pin3
BRX PF08381 398 - 452 2.5e-28 Transcription factor regulating root and shoot growth via Pin3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 250
AccIII TCCGGA 1 cut(s) 1160
AciI CCGC 7 cut(s) 111, 339, 1072, 1106, 1291, 1325, 1367
AclWI GGATC 1 cut(s) 424
AcsI RAATTY 2 cut(s) 831, 876
AcuI CTGAAG 3 cut(s) 933, 1045, 1264
AfaI GTAC 2 cut(s) 349, 1355
AfiI CCNNNNNNNGG 1 cut(s) 1363
AgeI ACCGGT 2 cut(s) 25, 120
AgsI TTSAA 6 cut(s) 376, 389, 520, 635, 697, 1373
AjiI CACGTC 1 cut(s) 886
AjnI CCWGG 4 cut(s) 997, 1027, 1216, 1246
AjuI GAANNNNNNNTTGG 4 cut(s) 533, 565, 778, 810
AleI CACNNNNGTG 2 cut(s) 183, 914
AluBI AGCT 9 cut(s) 557, 626, 653, 938, 974, 1175, 1238, 1410, 1419
AluI AGCT 9 cut(s) 557, 626, 653, 938, 974, 1175, 1238, 1410, 1419
Alw21I GWGCWC 1 cut(s) 499
Alw26I GTCTC 2 cut(s) 239, 596
AlwI GGATC 1 cut(s) 424
Aor13HI TCCGGA 1 cut(s) 1160
AoxI GGCC 3 cut(s) 7, 309, 894
ApaI GGGCCC 1 cut(s) 11
ApeKI GCWGC 5 cut(s) 219, 222, 450, 743, 1419
ApoI RAATTY 2 cut(s) 831, 876
AsiGI ACCGGT 2 cut(s) 25, 120
Asp700I GAANNNNTTC 1 cut(s) 609
AspS9I GGNCC 4 cut(s) 7, 8, 336, 894
AvaII GGWCC 1 cut(s) 336
BaeGI GKGCMC 1 cut(s) 11
BanI GGYRCC 1 cut(s) 250
BanII GRGCYC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 499
BbvI GCAGC 5 cut(s) 231, 234, 462, 755, 1406
BccI CCATC 1 cut(s) 667
BceAI ACGGC 1 cut(s) 264
BcgI CGANNNNNNTGC 2 cut(s) 843, 877
BciT130I CCWGG 4 cut(s) 999, 1029, 1218, 1248
BcoDI GTCTC 2 cut(s) 239, 596
BfaI CTAG 3 cut(s) 939, 1016, 1235
BglII AGATCT 2 cut(s) 637, 1261
BisI GCNGC 7 cut(s) 220, 223, 451, 744, 1107, 1326, 1420
BlsI GCNGC 7 cut(s) 221, 224, 452, 745, 1108, 1327, 1421
Bme1390I CCNGG 4 cut(s) 999, 1029, 1218, 1248
Bme18I GGWCC 1 cut(s) 336
BmgBI CACGTC 1 cut(s) 886
BmgT120I GGNCC 4 cut(s) 7, 8, 336, 894
BmiI GGNNCC 4 cut(s) 9, 10, 252, 337
BmrFI CCNGG 4 cut(s) 999, 1029, 1218, 1248
BmrI ACTGGG 2 cut(s) 518, 1375
BmuI ACTGGG 2 cut(s) 518, 1375
BpmI CTGGAG 1 cut(s) 1050
Bpu10I CCTNAGC 1 cut(s) 627
BpuEI CTTGAG 3 cut(s) 221, 788, 1250
BsaJI CCNNGG 2 cut(s) 246, 890
BsaWI WCCGGW 4 cut(s) 25, 120, 1144, 1160
Bsc4I CCNNNNNNNGG 1 cut(s) 1363
Bse118I RCCGGY 2 cut(s) 25, 120
Bse1I ACTGG 2 cut(s) 524, 1381
Bse3DI GCAATG 1 cut(s) 468
BseAI TCCGGA 1 cut(s) 1160
BseBI CCWGG 4 cut(s) 999, 1029, 1218, 1248
BseDI CCNNGG 2 cut(s) 246, 890
BseGI GGATG 2 cut(s) 536, 1198
BseLI CCNNNNNNNGG 1 cut(s) 1363
BseMI GCAATG 1 cut(s) 468
BseMII CTCAG 4 cut(s) 477, 567, 607, 641
BseNI ACTGG 2 cut(s) 524, 1381
BseRI GAGGAG 5 cut(s) 85, 119, 969, 1179, 1409
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 5 cut(s) 231, 234, 462, 755, 1406
BshFI GGCC 3 cut(s) 9, 311, 896
BshNI GGYRCC 1 cut(s) 250
BshTI ACCGGT 2 cut(s) 25, 120
BsiHKAI GWGCWC 1 cut(s) 499
BsiSI CCGG 4 cut(s) 26, 121, 1145, 1161
BslFI GGGAC 1 cut(s) 520
BslI CCNNNNNNNGG 1 cut(s) 1363
BsmAI GTCTC 2 cut(s) 239, 596
BsmFI GGGAC 1 cut(s) 520
BsmI GAATGC 1 cut(s) 211
BsnI GGCC 3 cut(s) 9, 311, 896
Bsp120I GGGCCC 1 cut(s) 7
Bsp1286I GDGCHC 2 cut(s) 11, 499
Bsp13I TCCGGA 1 cut(s) 1160
Bsp143I GATC 6 cut(s) 77, 416, 533, 637, 1042, 1261
BspACI CCGC 7 cut(s) 111, 339, 1072, 1106, 1291, 1325, 1367
BspANI GGCC 3 cut(s) 9, 311, 896
BspCNI CTCAG 4 cut(s) 478, 566, 606, 640
BspEI TCCGGA 1 cut(s) 1160
BspLI GGNNCC 4 cut(s) 9, 10, 252, 337
BspPI GGATC 1 cut(s) 424
BspT107I GGYRCC 1 cut(s) 250
BsrDI GCAATG 1 cut(s) 468
BsrFI RCCGGY 2 cut(s) 25, 120
BsrI ACTGG 2 cut(s) 524, 1381
BssAI RCCGGY 2 cut(s) 25, 120
BssECI CCNNGG 2 cut(s) 246, 890
BssMI GATC 6 cut(s) 77, 416, 533, 637, 1042, 1261
Bst2UI CCWGG 4 cut(s) 999, 1029, 1218, 1248
Bst4CI ACNGT 6 cut(s) 60, 182, 290, 693, 730, 967
Bst6I CTCTTC 2 cut(s) 331, 579
BstDEI CTNAG 4 cut(s) 486, 553, 593, 627
BstDSI CCRYGG 2 cut(s) 246, 890
BstF5I GGATG 2 cut(s) 536, 1198
BstKTI GATC 6 cut(s) 80, 419, 536, 640, 1045, 1264
BstMAI GTCTC 2 cut(s) 239, 596
BstMBI GATC 6 cut(s) 77, 416, 533, 637, 1042, 1261
BstMWI GCNNNNNNNGC 5 cut(s) 248, 994, 1181, 1213, 1416
BstNI CCWGG 4 cut(s) 999, 1029, 1218, 1248
BstNSI RCATGY 1 cut(s) 1274
BstSCI CCNGG 4 cut(s) 997, 1027, 1216, 1246
BstSLI GKGCMC 1 cut(s) 11
BstV1I GCAGC 5 cut(s) 231, 234, 462, 755, 1406
BstX2I RGATCY 3 cut(s) 416, 637, 1261
BstYI RGATCY 3 cut(s) 416, 637, 1261
BsuRI GGCC 3 cut(s) 9, 311, 896
BtgI CCRYGG 2 cut(s) 246, 890
BtrI CACGTC 1 cut(s) 886
BtsCI GGATG 2 cut(s) 536, 1198
BtsI GCAGTG 3 cut(s) 874, 1103, 1322
BtsIMutI CAGTG 6 cut(s) 312, 531, 874, 909, 1103, 1322
Cfr10I RCCGGY 2 cut(s) 25, 120
Cfr13I GGNCC 4 cut(s) 7, 8, 336, 894
CseI GACGC 1 cut(s) 479
Csp6I GTAC 2 cut(s) 348, 1354
CspAI ACCGGT 2 cut(s) 25, 120
CviAII CATG 4 cut(s) 133, 216, 1271, 1358
CviQI GTAC 2 cut(s) 348, 1354
DdeI CTNAG 4 cut(s) 486, 553, 593, 627
DpnI GATC 6 cut(s) 79, 418, 535, 639, 1044, 1263
DpnII GATC 6 cut(s) 77, 416, 533, 637, 1042, 1261
DraI TTTAAA 2 cut(s) 166, 400
Eam1104I CTCTTC 2 cut(s) 331, 579
EarI CTCTTC 2 cut(s) 331, 579
Eco24I GRGCYC 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 336
Eco57I CTGAAG 3 cut(s) 933, 1045, 1264
EcoO109I RGGNCCY 1 cut(s) 8
EcoRII CCWGG 4 cut(s) 997, 1027, 1216, 1246
EcoT38I GRGCYC 1 cut(s) 11
FaeI CATG 4 cut(s) 136, 219, 1274, 1361
FalI AAGNNNNNCTT 4 cut(s) 403, 435, 642, 674
FaqI GGGAC 1 cut(s) 520
FatI CATG 4 cut(s) 132, 215, 1270, 1357
Fnu4HI GCNGC 7 cut(s) 220, 223, 451, 744, 1107, 1326, 1420
FokI GGATG 2 cut(s) 523, 1205
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 7 cut(s) 220, 223, 451, 744, 1107, 1326, 1420
FspBI CTAG 3 cut(s) 939, 1016, 1235
GluI GCNGC 7 cut(s) 220, 223, 451, 744, 1107, 1326, 1420
GsuI CTGGAG 1 cut(s) 1050
HaeIII GGCC 3 cut(s) 9, 311, 896
HapII CCGG 4 cut(s) 26, 121, 1145, 1161
HgaI GACGC 1 cut(s) 479
Hin1II CATG 4 cut(s) 136, 219, 1274, 1361
HinfI GANTC 2 cut(s) 364, 372
HpaII CCGG 4 cut(s) 26, 121, 1145, 1161
Hpy166II GTNNAC 2 cut(s) 197, 570
Hpy188III TCNNGA 3 cut(s) 75, 662, 1161
Hpy8I GTNNAC 2 cut(s) 197, 570
Hpy99I CGWCG 3 cut(s) 60, 495, 1394
HpyAV CCTTC 6 cut(s) 161, 301, 691, 780, 1062, 1395
HpyCH4III ACNGT 6 cut(s) 60, 182, 290, 693, 730, 967
HpyCH4IV ACGT 1 cut(s) 885
HpyCH4V TGCA 4 cut(s) 219, 296, 473, 738
HpyF10VI GCNNNNNNNGC 5 cut(s) 248, 994, 1181, 1213, 1416
HpyF3I CTNAG 4 cut(s) 486, 553, 593, 627
HpySE526I ACGT 1 cut(s) 885
Hsp92II CATG 4 cut(s) 136, 219, 1274, 1361
Kpn2I TCCGGA 1 cut(s) 1160
Kzo9I GATC 6 cut(s) 77, 416, 533, 637, 1042, 1261
LmnI GCTCC 2 cut(s) 956, 1166
Lsp1109I GCAGC 5 cut(s) 231, 234, 462, 755, 1406
MaeI CTAG 3 cut(s) 939, 1016, 1235
MaeII ACGT 1 cut(s) 885
MaeIII GTNAC 4 cut(s) 16, 28, 123, 967
MalI GATC 6 cut(s) 79, 418, 535, 639, 1044, 1263
MboI GATC 6 cut(s) 77, 416, 533, 637, 1042, 1261
MboII GAAGA 7 cut(s) 57, 318, 411, 566, 617, 647, 734
MfeI CAATTG 1 cut(s) 843
MflI RGATCY 3 cut(s) 416, 637, 1261
MhlI GDGCHC 2 cut(s) 11, 499
MluCI AATT 9 cut(s) 160, 190, 394, 617, 666, 756, 831, 843, 876
MmeI TCCRAC 3 cut(s) 79, 578, 1413
MnlI CCTC 9 cut(s) 106, 140, 594, 694, 783, 947, 1025, 1157, 1387
MroI TCCGGA 1 cut(s) 1160
MroXI GAANNNNTTC 1 cut(s) 609
MseI TTAA 6 cut(s) 159, 165, 399, 620, 759, 1152
MslI CAYNNNNRTG 2 cut(s) 183, 914
MspA1I CMGCKG 1 cut(s) 974
MspI CCGG 4 cut(s) 26, 121, 1145, 1161
MspR9I CCNGG 4 cut(s) 999, 1029, 1218, 1248
MunI CAATTG 1 cut(s) 843
Mva1269I GAATGC 1 cut(s) 211
MvaI CCWGG 4 cut(s) 999, 1029, 1218, 1248
MwoI GCNNNNNNNGC 5 cut(s) 248, 994, 1181, 1213, 1416
NdeII GATC 6 cut(s) 77, 416, 533, 637, 1042, 1261
NlaIII CATG 4 cut(s) 136, 219, 1274, 1361
NlaIV GGNNCC 4 cut(s) 9, 10, 252, 337
NmuCI GTSAC 3 cut(s) 16, 28, 123
NspI RCATGY 1 cut(s) 1274
OliI CACNNNNGTG 2 cut(s) 183, 914
PcsI WCGNNNNNNNCGW 2 cut(s) 1063, 1282
PctI GAATGC 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 609
PfeI GAWTC 2 cut(s) 364, 372
PinAI ACCGGT 2 cut(s) 25, 120
PkrI GCNGC 7 cut(s) 221, 224, 452, 745, 1108, 1327, 1421
Psp6I CCWGG 4 cut(s) 997, 1027, 1216, 1246
PspGI CCWGG 4 cut(s) 997, 1027, 1216, 1246
PspN4I GGNNCC 4 cut(s) 9, 10, 252, 337
PspOMI GGGCCC 1 cut(s) 7
PspPI GGNCC 4 cut(s) 7, 8, 336, 894
PsuI RGATCY 3 cut(s) 416, 637, 1261
PvuII CAGCTG 1 cut(s) 974
RsaI GTAC 2 cut(s) 349, 1355
RsaNI GTAC 2 cut(s) 348, 1354
RseI CAYNNNNRTG 2 cut(s) 183, 914
SaqAI TTAA 6 cut(s) 159, 165, 399, 620, 759, 1152
SatI GCNGC 7 cut(s) 220, 223, 451, 744, 1107, 1326, 1420
Sau3AI GATC 6 cut(s) 77, 416, 533, 637, 1042, 1261
Sau96I GGNCC 4 cut(s) 7, 8, 336, 894
ScrFI CCNGG 4 cut(s) 999, 1029, 1218, 1248
SduI GDGCHC 2 cut(s) 11, 499
SinI GGWCC 1 cut(s) 336
SmiMI CAYNNNNRTG 2 cut(s) 183, 914
SmlI CTYRAG 3 cut(s) 236, 803, 1265
SmoI CTYRAG 3 cut(s) 236, 803, 1265
Sse9I AATT 9 cut(s) 160, 190, 394, 617, 666, 756, 831, 843, 876
SsiI CCGC 7 cut(s) 111, 339, 1072, 1106, 1291, 1325, 1367
SspMI CTAG 3 cut(s) 939, 1016, 1235
StyD4I CCNGG 4 cut(s) 997, 1027, 1216, 1246
TaaI ACNGT 6 cut(s) 60, 182, 290, 693, 730, 967
TaiI ACGT 1 cut(s) 888
TaqI TCGA 5 cut(s) 493, 661, 863, 1066, 1285
TasI AATT 9 cut(s) 160, 190, 394, 617, 666, 756, 831, 843, 876
TatI WGTACW 1 cut(s) 347
TauI GCSGC 2 cut(s) 1109, 1328
TfiI GAWTC 2 cut(s) 364, 372
Tru1I TTAA 6 cut(s) 159, 165, 399, 620, 759, 1152
Tru9I TTAA 6 cut(s) 159, 165, 399, 620, 759, 1152
TscAI CASTG 6 cut(s) 319, 531, 874, 916, 1103, 1322
TseFI GTSAC 3 cut(s) 16, 28, 123
TseI GCWGC 5 cut(s) 219, 222, 450, 743, 1419
Tsp45I GTSAC 3 cut(s) 16, 28, 123
TspDTI ATGAA 4 cut(s) 204, 318, 377, 1209
TspRI CASTG 6 cut(s) 319, 531, 874, 916, 1103, 1322
VpaK11BI GGWCC 1 cut(s) 336
XapI RAATTY 2 cut(s) 831, 876
XceI RCATGY 1 cut(s) 1274
XmnI GAANNNNTTC 1 cut(s) 609
XspI CTAG 3 cut(s) 939, 1016, 1235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.