pycom16g06500

Transcription factor BRX N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0003738
Physical Location & Seq
Forward (+)
4169194 .. 4170102
909 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g06500.5

Sequence Viewer

Length: 342 bp
ATGGCTAGTCCCCAGAGAAGCGGTCCGGTCGAGAGGGATATCGACCAGGCCATAACAGCACTTAAGAAAGGTGCAACTTTGTTAAAATATGGACGCAGAGGGAAGCCGAAATTCTGCTCATTTCGGCTTTCTAATGACGAGGCTTTGTTGATATGGTACTCTGGCAAAAAAGAAAAGCACCTTAAACTGAGTCATGTTTCGACAATTCTTCCTGGCCAGCGTACTGCAATATTTCAGCGGTATCCACAGCCTGAAAAGGAGTATCAATCATTTTCACTCCTGCACAACGATAGGTCCTTGAACTTGTTCATCACGTTACCTCCCTGTTGGACAGATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N FYVE PH_12 RCC1

Protein Analysis

114

Amino Acids

13.01

Weight (kDa)

9.78

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 21, 238
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 1 cut(s) 110
AfaI GTAC 2 cut(s) 158, 223
AflII CTTAAG 1 cut(s) 62
AgsI TTSAA 1 cut(s) 301
AjnI CCWGG 2 cut(s) 45, 211
AoxI GGCC 2 cut(s) 48, 214
ApoI RAATTY 1 cut(s) 110
Asp700I GAANNNNTTC 1 cut(s) 305
AspS9I GGNCC 2 cut(s) 23, 294
AvaII GGWCC 2 cut(s) 23, 294
BalI TGGCCA 1 cut(s) 216
BciT130I CCWGG 2 cut(s) 47, 213
BciVI GTATCC 1 cut(s) 252
BfaI CTAG 1 cut(s) 6
BfrI CTTAAG 1 cut(s) 62
BfuI GTATCC 1 cut(s) 252
Bme1390I CCNGG 2 cut(s) 47, 213
Bme18I GGWCC 2 cut(s) 23, 294
BmgT120I GGNCC 2 cut(s) 23, 294
BmrFI CCNGG 2 cut(s) 47, 213
BsaWI WCCGGW 1 cut(s) 25
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
BseBI CCWGG 2 cut(s) 47, 213
BseMII CTCAG 1 cut(s) 179
BsgI GTGCAG 1 cut(s) 266
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 2 cut(s) 50, 216
BsiEI CGRYCG 1 cut(s) 30
BsiSI CCGG 1 cut(s) 26
BsnI GGCC 2 cut(s) 50, 216
BspACI CCGC 2 cut(s) 21, 238
BspANI GGCC 2 cut(s) 50, 216
BspCNI CTCAG 1 cut(s) 180
BspTI CTTAAG 1 cut(s) 62
Bst2UI CCWGG 2 cut(s) 47, 213
BstAFI CTTAAG 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 218
BstDEI CTNAG 1 cut(s) 188
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 2 cut(s) 47, 213
BstSCI CCNGG 2 cut(s) 45, 211
BsuI GTATCC 1 cut(s) 252
BsuRI GGCC 2 cut(s) 50, 216
Cac8I GCNNGC 1 cut(s) 218
Cfr13I GGNCC 2 cut(s) 23, 294
CpoI CGGWCCG 1 cut(s) 23
CseI GACGC 1 cut(s) 102
Csp6I GTAC 2 cut(s) 157, 222
CspI CGGWCCG 1 cut(s) 23
CviAII CATG 1 cut(s) 194
CviJI RGCY 7 cut(s) 5, 50, 106, 127, 143, 216, 250
CviKI_1 RGCY 7 cut(s) 5, 50, 106, 127, 143, 216, 250
CviQI GTAC 2 cut(s) 157, 222
DdeI CTNAG 1 cut(s) 188
EaeI YGGCCR 1 cut(s) 214
Eco32I GATATC 1 cut(s) 40
Eco47I GGWCC 2 cut(s) 23, 294
EcoO109I RGGNCCY 1 cut(s) 294
EcoRII CCWGG 2 cut(s) 45, 211
EcoRV GATATC 1 cut(s) 40
FaeI CATG 1 cut(s) 197
FaiI YATR 5 cut(s) 53, 90, 154, 195, 338
FatI CATG 1 cut(s) 193
FspBI CTAG 1 cut(s) 6
HaeIII GGCC 2 cut(s) 50, 216
HapII CCGG 1 cut(s) 26
HgaI GACGC 1 cut(s) 102
Hin1II CATG 1 cut(s) 197
HinfI GANTC 1 cut(s) 190
HpaII CCGG 1 cut(s) 26
Hpy188III TCNNGA 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 314
HpyCH4V TGCA 3 cut(s) 74, 227, 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 188
HpySE526I ACGT 1 cut(s) 314
Hsp92II CATG 1 cut(s) 197
MaeI CTAG 1 cut(s) 6
MaeII ACGT 1 cut(s) 314
MaeIII GTNAC 1 cut(s) 315
MboII GAAGA 1 cut(s) 200
MlsI TGGCCA 1 cut(s) 216
MluCI AATT 2 cut(s) 110, 204
MluNI TGGCCA 1 cut(s) 216
MlyI GAGTC 1 cut(s) 199
MmeI TCCRAC 1 cut(s) 308
MnlI CCTC 4 cut(s) 27, 92, 133, 330
Mox20I TGGCCA 1 cut(s) 216
MroXI GAANNNNTTC 1 cut(s) 305
MscI TGGCCA 1 cut(s) 216
MseI TTAA 3 cut(s) 63, 83, 183
Msp20I TGGCCA 1 cut(s) 216
MspA1I CMGCKG 1 cut(s) 238
MspCI CTTAAG 1 cut(s) 62
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 2 cut(s) 47, 213
MvaI CCWGG 2 cut(s) 47, 213
MwoI GCNNNNNNNGC 1 cut(s) 56
NlaIII CATG 1 cut(s) 197
PdmI GAANNNNTTC 1 cut(s) 305
PleI GAGTC 1 cut(s) 198
PpsI GAGTC 1 cut(s) 198
PpuMI RGGWCCY 1 cut(s) 294
Psp5II RGGWCCY 1 cut(s) 294
Psp6I CCWGG 2 cut(s) 45, 211
PspGI CCWGG 2 cut(s) 45, 211
PspPI GGNCC 2 cut(s) 23, 294
PspPPI RGGWCCY 1 cut(s) 294
RsaI GTAC 2 cut(s) 158, 223
RsaNI GTAC 2 cut(s) 157, 222
Rsr2I CGGWCCG 1 cut(s) 23
RsrII CGGWCCG 1 cut(s) 23
SaqAI TTAA 3 cut(s) 63, 83, 183
Sau96I GGNCC 2 cut(s) 23, 294
SchI GAGTC 1 cut(s) 199
ScrFI CCNGG 2 cut(s) 47, 213
SetI ASST 5 cut(s) 73, 183, 296, 317, 322
SinI GGWCC 2 cut(s) 23, 294
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 2 cut(s) 110, 204
SsiI CCGC 2 cut(s) 21, 238
SspI AATATT 1 cut(s) 231
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 2 cut(s) 45, 211
TaiI ACGT 1 cut(s) 317
TaqI TCGA 3 cut(s) 30, 42, 200
TasI AATT 2 cut(s) 110, 204
Tru1I TTAA 3 cut(s) 63, 83, 183
Tru9I TTAA 3 cut(s) 63, 83, 183
TspDTI ATGAA 1 cut(s) 298
Vha464I CTTAAG 1 cut(s) 62
VpaK11BI GGWCC 2 cut(s) 23, 294
XapI RAATTY 1 cut(s) 110
XmnI GAANNNNTTC 1 cut(s) 305
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.