Rmu_sc0001449.1_g000001

Protein present in Fab1, YOTB, Vac1, and EEA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001449.1
OG0003738
Physical Location & Seq
Forward (+)
1 .. 4144
4144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001449.1_g000001.1.cds

Sequence Viewer

Length: 657 bp
gtcgaagatcttactcgtaaaagtcgagttcaagatactgagctggaaagaactacccaccaattgaaggaggctgtcaaagtagcagacgaagaaactgcaaaatgtaaagcagcaaaggaagtaattaagtcgctcacagctcaattaaaggaaatggctgaaaggttacccattgggacagcaagaagcagtgacacacgtccgttaggcttttctagtcctacccatgacgtttctactacagccattgagaaagcaagcagtccattgaccttccatgaaccacattcaattgcatcaaatagcctggtggtttctaatgcatcaaggattttgagtaatcatgcttcaaatcccactgaagtggcaaattcggaagcaactactaggcataagaacagaggaacaaaagctgaaaccacaaatggggatgaatgggttgagcaagatgagcctggtgtatatattaccctggtttccttgcccacaggagtcaaagatctcaagcgtgtccgcttcagtcgaaagcggttcagtgagaaacaagcggaacagtggtgggcggcaaataggactagagtataccagcagtacaatgttcctgtggttgaaaaatctagtattcccataggaagagaagggttagctcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

218

Amino Acids

24.24

Weight (kDa)

8.95

Isoelectric Point (pI)

38.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 585
AciI CCGC 4 cut(s) 517, 532, 551, 566
AcsI RAATTY 1 cut(s) 373
AcuI CTGAAG 2 cut(s) 384, 505
AfaI GTAC 1 cut(s) 596
AfiI CCNNNNNNNGG 2 cut(s) 67, 429
AflIII ACRYGT 1 cut(s) 200
AgsI TTSAA 5 cut(s) 32, 67, 294, 354, 614
AjiI CACGTC 1 cut(s) 203
AjnI CCWGG 3 cut(s) 309, 457, 474
AleI CACNNNNGTG 1 cut(s) 365
AluBI AGCT 4 cut(s) 43, 143, 416, 650
AluI AGCT 4 cut(s) 43, 143, 416, 650
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 373
BarI GAAGNNNNNNTAC 2 cut(s) 334, 366
BbvI GCAGC 1 cut(s) 125
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciT130I CCWGG 3 cut(s) 311, 459, 476
BfaI CTAG 4 cut(s) 219, 390, 579, 621
BfmI CTRYAG 1 cut(s) 243
BglII AGATCT 2 cut(s) 7, 502
BisI GCNGC 2 cut(s) 114, 567
BlsI GCNGC 2 cut(s) 115, 568
Bme1390I CCNGG 3 cut(s) 311, 459, 476
BmgBI CACGTC 1 cut(s) 203
BmrFI CCNGG 3 cut(s) 311, 459, 476
BmsI GCATC 2 cut(s) 308, 335
BoxI GACNNNNGTC 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 491
BsaJI CCNNGG 1 cut(s) 474
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 429
BseBI CCWGG 3 cut(s) 311, 459, 476
BseDI CCNNGG 1 cut(s) 474
BseGI GGATG 1 cut(s) 439
BseLI CCNNNNNNNGG 2 cut(s) 67, 429
BseMII CTCAG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 125
BslFI GGGAC 1 cut(s) 193
BslI CCNNNNNNNGG 2 cut(s) 67, 429
BsmFI GGGAC 1 cut(s) 193
Bsp143I GATC 2 cut(s) 7, 502
BspACI CCGC 4 cut(s) 517, 532, 551, 566
BspCNI CTCAG 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 474
BssMI GATC 2 cut(s) 7, 502
BssNAI GTATAC 1 cut(s) 586
Bst1107I GTATAC 1 cut(s) 586
Bst2UI CCWGG 3 cut(s) 311, 459, 476
Bst4CI ACNGT 1 cut(s) 558
Bst6I CTCTTC 1 cut(s) 631
BstC8I GCNNGC 1 cut(s) 262
BstDEI CTNAG 1 cut(s) 39
BstEII GGTNACC 1 cut(s) 168
BstF5I GGATG 1 cut(s) 439
BstKTI GATC 2 cut(s) 10, 505
BstMBI GATC 2 cut(s) 7, 502
BstMWI GCNNNNNNNGC 1 cut(s) 454
BstNI CCWGG 3 cut(s) 311, 459, 476
BstPAI GACNNNNGTC 1 cut(s) 201
BstPI GGTNACC 1 cut(s) 168
BstSCI CCNGG 3 cut(s) 309, 457, 474
BstSFI CTRYAG 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 125
BstX2I RGATCY 2 cut(s) 7, 502
BstXI CCANNNNNNTGG 1 cut(s) 367
BstYI RGATCY 2 cut(s) 7, 502
BstZ17I GTATAC 1 cut(s) 586
BtrI CACGTC 1 cut(s) 203
BtsCI GGATG 1 cut(s) 439
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 4 cut(s) 199, 360, 544, 563
Cac8I GCNNGC 1 cut(s) 262
Csp6I GTAC 1 cut(s) 595
CviAII CATG 3 cut(s) 230, 281, 347
CviQI GTAC 1 cut(s) 595
DdeI CTNAG 1 cut(s) 39
DpnI GATC 2 cut(s) 9, 504
DpnII GATC 2 cut(s) 7, 502
Eam1104I CTCTTC 1 cut(s) 631
EarI CTCTTC 1 cut(s) 631
Eco57I CTGAAG 2 cut(s) 384, 505
Eco91I GGTNACC 1 cut(s) 168
EcoO65I GGTNACC 1 cut(s) 168
EcoRII CCWGG 3 cut(s) 309, 457, 474
EcoT22I ATGCAT 1 cut(s) 328
FaeI CATG 3 cut(s) 233, 284, 350
FaiI YATR 8 cut(s) 231, 282, 348, 396, 466, 468, 586, 632
FaqI GGGAC 1 cut(s) 193
FatI CATG 3 cut(s) 229, 280, 346
FblI GTMKAC 1 cut(s) 585
Fnu4HI GCNGC 2 cut(s) 114, 567
FokI GGATG 1 cut(s) 446
Fsp4HI GCNGC 2 cut(s) 114, 567
FspBI CTAG 4 cut(s) 219, 390, 579, 621
GluI GCNGC 2 cut(s) 114, 567
Hin1II CATG 3 cut(s) 233, 284, 350
HinfI GANTC 1 cut(s) 495
Hpy166II GTNNAC 1 cut(s) 586
Hpy188I TCNGA 1 cut(s) 379
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 1 cut(s) 586
HpyAV CCTTC 3 cut(s) 61, 286, 635
HpyCH4III ACNGT 1 cut(s) 558
HpyCH4IV ACGT 2 cut(s) 202, 234
HpyCH4V TGCA 3 cut(s) 101, 299, 326
HpyF10VI GCNNNNNNNGC 1 cut(s) 454
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 2 cut(s) 202, 234
Hsp92II CATG 3 cut(s) 233, 284, 350
Kzo9I GATC 2 cut(s) 7, 502
Lsp1109I GCAGC 1 cut(s) 125
LweI GCATC 2 cut(s) 308, 335
MaeI CTAG 4 cut(s) 219, 390, 579, 621
MaeII ACGT 2 cut(s) 202, 234
MaeIII GTNAC 2 cut(s) 168, 194
MalI GATC 2 cut(s) 9, 504
MboI GATC 2 cut(s) 7, 502
MboII GAAGA 3 cut(s) 17, 104, 648
MfeI CAATTG 2 cut(s) 62, 294
MflI RGATCY 2 cut(s) 7, 502
MluCI AATT 5 cut(s) 62, 126, 146, 294, 373
MlyI GAGTC 1 cut(s) 504
MnlI CCTC 2 cut(s) 64, 398
Mph1103I ATGCAT 1 cut(s) 328
MseI TTAA 2 cut(s) 129, 149
MslI CAYNNNNRTG 1 cut(s) 365
MspR9I CCNGG 3 cut(s) 311, 459, 476
MunI CAATTG 2 cut(s) 62, 294
MvaI CCWGG 3 cut(s) 311, 459, 476
MwoI GCNNNNNNNGC 1 cut(s) 454
NdeII GATC 2 cut(s) 7, 502
NlaIII CATG 3 cut(s) 233, 284, 350
NmuCI GTSAC 1 cut(s) 194
NsiI ATGCAT 1 cut(s) 328
OliI CACNNNNGTG 1 cut(s) 365
PcsI WCGNNNNNNNCGW 1 cut(s) 22
PkrI GCNGC 2 cut(s) 115, 568
PleI GAGTC 1 cut(s) 503
PpsI GAGTC 1 cut(s) 503
PshAI GACNNNNGTC 1 cut(s) 201
Psp6I CCWGG 3 cut(s) 309, 457, 474
PspEI GGTNACC 1 cut(s) 168
PspGI CCWGG 3 cut(s) 309, 457, 474
PsuI RGATCY 2 cut(s) 7, 502
RsaI GTAC 1 cut(s) 596
RsaNI GTAC 1 cut(s) 595
RseI CAYNNNNRTG 1 cut(s) 365
SaqAI TTAA 2 cut(s) 129, 149
SatI GCNGC 2 cut(s) 114, 567
Sau3AI GATC 2 cut(s) 7, 502
SchI GAGTC 1 cut(s) 504
ScrFI CCNGG 3 cut(s) 311, 459, 476
SetI ASST 8 cut(s) 45, 145, 170, 205, 237, 278, 418, 652
SfaNI GCATC 2 cut(s) 308, 335
SfcI CTRYAG 1 cut(s) 243
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 5 cut(s) 62, 126, 146, 294, 373
SsiI CCGC 4 cut(s) 517, 532, 551, 566
SspMI CTAG 4 cut(s) 219, 390, 579, 621
StyD4I CCNGG 3 cut(s) 309, 457, 474
TaaI ACNGT 1 cut(s) 558
TaiI ACGT 2 cut(s) 205, 237
TaqI TCGA 3 cut(s) 3, 25, 526
TasI AATT 5 cut(s) 62, 126, 146, 294, 373
TatI WGTACW 1 cut(s) 594
TauI GCSGC 1 cut(s) 569
Tru1I TTAA 2 cut(s) 129, 149
Tru9I TTAA 2 cut(s) 129, 149
TscAI CASTG 4 cut(s) 199, 367, 544, 563
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 2 cut(s) 297, 450
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 4 cut(s) 199, 367, 544, 563
XapI RAATTY 1 cut(s) 373
XmiI GTMKAC 1 cut(s) 585
XspI CTAG 4 cut(s) 219, 390, 579, 621
Zsp2I ATGCAT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.