Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003738

Physical Location & Seq

Genomic Coordinates Forward (+)

1419661 .. 1422669

Gene Structure 3009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g01140.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCAGATCTTGTTAGCTACGGGAATGCCAACCGTGACATCGACCAGGCAATAATTGCTTTGAAGGAGGGTGCTCAACTACTGAAATATGGTCGTAAGGGAAAGCCTAAGTTTTGTCCATTTAGACTTTCTACTGACGAATCAACTTTGATCTGGATTTCAAGTAGCGAAAGAAGTTTGAAGTTGGCTTCTGTCACAAGAATTGTTCCTGGACAAAGAACTGCTGTCTTTCAACGATATTTACGTCCTGAAAAGGACTATTTATCATTTTCTCTTACGTACAATAACGGAAAGCGGTCTCTTGATCTGATTTGCAAGGACAAAGTTGAGGCGCAAGTGTGGATTGCAGGCCTTAAAGCACTAATTTCCTCCGGCAGAGGTGGGCGTTCGAAAATTGACGGATGGAGTGATGGAGGCCTCTACGTTGATGCACGAAAGGAGTACTTATTTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005086 GO:0005088 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0008150 GO:0008289 GO:0012505 GO:0016020 GO:0017016 GO:0017112 GO:0017137 GO:0019899 GO:0031267 GO:0035091 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051020 GO:0065007 GO:0065009 GO:0070300 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N FYVE PH_12 RCC1

Protein Analysis

152

Amino Acids

16.89

Weight (kDa)

9.66

Isoelectric Point (pI)

23.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12350 AT5G19420 AT5G19420 AT5G19420
fragaria_vesca	FvH4_7g02960 FvH4_7g02960 FvH4_7g02960 FvH4_7g02960
malus_domestica	MD02G1288400.v1.1 MD07G1038100.v1.1 MD07G1038400.v1.1 MD13G1037300.v1.1
prunus_persica	Prupe.2G034600_v2.0.a1 Prupe.2G034600_v2.0.a1 Prupe.2G034600_v2.0.a1
pyrus_communis	pycom02g24410 pycom05g01140 pycom07g02640 pycom07g02670 pycom16g06500
rosa_chinensis	RchiOBHm_Chr1g0323931
rosa_laevigata	RLG00000030242
rosa_multiflora	Rmu_co8261369.1_g000001 Rmu_sc0001449.1_g000001 Rmu_sc0011010.1_g000012 Rmu_sc0012343.1_g000006 Rmu_sc0012343.1_g000007
rosa_roxburghii	Rroxscaffold_4G00326110
rosa_rugosa	Rorug01G0040600
rosa_samantha	Rh1AG058500 Rh1BG049600 Rh1CG060400 Rh1DG064400
rosa_wichuraiana	Rw0G011380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	295
AfaI	GTAC	2 cut(s)	281, 443
AgsI	TTSAA	4 cut(s)	64, 162, 181, 233
AjnI	CCWGG	2 cut(s)	45, 208
AluBI	AGCT	1 cut(s)	18
AluI	AGCT	1 cut(s)	18
Alw21I	GWGCWC	1 cut(s)	76
Alw26I	GTCTC	1 cut(s)	303
AoxI	GGCC	2 cut(s)	349, 415
AspLEI	GCGC	1 cut(s)	334
AsuII	TTCGAA	1 cut(s)	389
Bbv12I	GWGCWC	1 cut(s)	76
BccI	CCATC	2 cut(s)	396, 404
BciT130I	CCWGG	2 cut(s)	47, 210
BcoDI	GTCTC	1 cut(s)	303
BglII	AGATCT	1 cut(s)	7
BmcAI	AGTACT	1 cut(s)	443
Bme1390I	CCNGG	2 cut(s)	47, 210
BmrFI	CCNGG	2 cut(s)	47, 210
BmsI	GCATC	1 cut(s)	418
Bpu14I	TTCGAA	1 cut(s)	389
BsaAI	YACGTR	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	303
BseBI	CCWGG	2 cut(s)	47, 210
BseGI	GGATG	1 cut(s)	407
BshFI	GGCC	2 cut(s)	351, 417
BsiHKAI	GWGCWC	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	372
BsmAI	GTCTC	1 cut(s)	303
BsmI	GAATGC	1 cut(s)	31
BsnI	GGCC	2 cut(s)	351, 417
Bso31I	GGTCTC	1 cut(s)	303
Bsp119I	TTCGAA	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	3 cut(s)	7, 150, 304
BspACI	CCGC	1 cut(s)	295
BspANI	GGCC	2 cut(s)	351, 417
BspT104I	TTCGAA	1 cut(s)	389
BspTNI	GGTCTC	1 cut(s)	303
BssMI	GATC	3 cut(s)	7, 150, 304
Bst2UI	CCWGG	2 cut(s)	47, 210
Bst4CI	ACNGT	1 cut(s)	35
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstBAI	YACGTR	1 cut(s)	279
BstBI	TTCGAA	1 cut(s)	389
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	407
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	3 cut(s)	10, 153, 307
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	3 cut(s)	7, 150, 304
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	2 cut(s)	47, 210
BstSCI	CCNGG	2 cut(s)	45, 208
BstSNI	TACGTA	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	351, 417
BtsCI	GGATG	1 cut(s)	407
Cac8I	GCNNGC	1 cut(s)	349
CfoI	GCGC	1 cut(s)	334
Csp6I	GTAC	2 cut(s)	280, 442
CviJI	RGCY	5 cut(s)	18, 106, 188, 351, 417
CviKI_1	RGCY	5 cut(s)	18, 106, 188, 351, 417
CviQI	GTAC	2 cut(s)	280, 442
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	3 cut(s)	9, 152, 306
DpnII	GATC	3 cut(s)	7, 150, 304
Eco105I	TACGTA	1 cut(s)	279
Eco147I	AGGCCT	2 cut(s)	351, 417
Eco31I	GGTCTC	1 cut(s)	303
EcoRII	CCWGG	2 cut(s)	45, 208
FaiI	YATR	1 cut(s)	90
FalI	AAGNNNNNCTT	1 cut(s)	428
FokI	GGATG	1 cut(s)	414
GlaI	GCGC	1 cut(s)	333
HaeIII	GGCC	2 cut(s)	351, 417
HapII	CCGG	1 cut(s)	372
HhaI	GCGC	1 cut(s)	334
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HinfI	GANTC	1 cut(s)	140
HpaII	CCGG	1 cut(s)	372
Hpy188I	TCNGA	1 cut(s)	309
Hpy188III	TCNNGA	3 cut(s)	154, 248, 302
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4IV	ACGT	3 cut(s)	244, 278, 423
HpyCH4V	TGCA	3 cut(s)	315, 347, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	3 cut(s)	244, 278, 423
HspAI	GCGC	1 cut(s)	332
Kzo9I	GATC	3 cut(s)	7, 150, 304
LpnPI	CCDG	8 cut(s)	32, 59, 139, 195, 222, 261, 333, 385
LweI	GCATC	1 cut(s)	418
MaeII	ACGT	3 cut(s)	244, 278, 423
MaeIII	GTNAC	2 cut(s)	35, 193
MalI	GATC	3 cut(s)	9, 152, 306
MboI	GATC	3 cut(s)	7, 150, 304
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	4 cut(s)	54, 201, 363, 393
MnlI	CCTC	6 cut(s)	61, 322, 371, 379, 407, 428
MseI	TTAA	1 cut(s)	354
MspI	CCGG	1 cut(s)	372
MspR9I	CCNGG	2 cut(s)	47, 210
Mva1269I	GAATGC	1 cut(s)	31
MvaI	CCWGG	2 cut(s)	47, 210
MwoI	GCNNNNNNNGC	1 cut(s)	56
NdeII	GATC	3 cut(s)	7, 150, 304
NmuCI	GTSAC	2 cut(s)	35, 193
NspV	TTCGAA	1 cut(s)	389
PceI	AGGCCT	2 cut(s)	351, 417
PcsI	WCGNNNNNNNCGW	1 cut(s)	241
PctI	GAATGC	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	140
PfoI	TCCNGGA	1 cut(s)	208
Ppu21I	YACGTR	1 cut(s)	279
Psp6I	CCWGG	2 cut(s)	45, 208
PspGI	CCWGG	2 cut(s)	45, 208
PsuI	RGATCY	1 cut(s)	7
RsaI	GTAC	2 cut(s)	281, 443
RsaNI	GTAC	2 cut(s)	280, 442
SaqAI	TTAA	1 cut(s)	354
Sau3AI	GATC	3 cut(s)	7, 150, 304
ScaI	AGTACT	1 cut(s)	443
ScrFI	CCNGG	2 cut(s)	47, 210
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	5 cut(s)	20, 247, 281, 382, 426
SfaNI	GCATC	1 cut(s)	418
SfuI	TTCGAA	1 cut(s)	389
SnaBI	TACGTA	1 cut(s)	279
Sse9I	AATT	4 cut(s)	54, 201, 363, 393
SseBI	AGGCCT	2 cut(s)	351, 417
SsiI	CCGC	1 cut(s)	295
StuI	AGGCCT	2 cut(s)	351, 417
StyD4I	CCNGG	2 cut(s)	45, 208
TaaI	ACNGT	1 cut(s)	35
TaiI	ACGT	3 cut(s)	247, 281, 426
TaqI	TCGA	2 cut(s)	42, 389
TasI	AATT	4 cut(s)	54, 201, 363, 393
TatI	WGTACW	1 cut(s)	441
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TseFI	GTSAC	2 cut(s)	35, 193
Tsp45I	GTSAC	2 cut(s)	35, 193
TspGWI	ACGGA	2 cut(s)	303, 414
ZrmI	AGTACT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.