Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003738

Physical Location & Seq

Genomic Coordinates Reverse (-)

9555141 .. 9558204

Gene Structure 3064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG058500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGTTGCGCATGGAGAGGATGACTGCCGATCAGGCGAAGGCGGGCCCACTCGAAAGGGACATTCATTTGATATGCAAGGATAAAGATGAAGCTGAAGTCTGGTTTACTGGTCTAAAAGCATTAATATCACGAGCCTTCAACAGAAGGGGAGAGCAGAAACAAAAAGTGGAGTTACCTCTGAAGCAAATAGTCCAAGATCACACATGCAAAGAAGTTCTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

74

Amino Acids

8.62

Weight (kDa)

8.68

Isoelectric Point (pI)

27.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12350 AT5G19420 AT5G19420 AT5G19420
fragaria_vesca	FvH4_7g02960 FvH4_7g02960 FvH4_7g02960 FvH4_7g02960
malus_domestica	MD02G1288400.v1.1 MD07G1038100.v1.1 MD07G1038400.v1.1 MD13G1037300.v1.1
prunus_persica	Prupe.2G034600_v2.0.a1 Prupe.2G034600_v2.0.a1 Prupe.2G034600_v2.0.a1
pyrus_communis	pycom02g24410 pycom05g01140 pycom07g02640 pycom07g02670 pycom16g06500
rosa_chinensis	RchiOBHm_Chr1g0323931
rosa_laevigata	RLG00000030242
rosa_multiflora	Rmu_co8261369.1_g000001 Rmu_sc0001449.1_g000001 Rmu_sc0011010.1_g000012 Rmu_sc0012343.1_g000006 Rmu_sc0012343.1_g000007
rosa_roxburghii	Rroxscaffold_4G00326110
rosa_rugosa	Rorug01G0040600
rosa_samantha	Rh1AG058500 Rh1BG049600 Rh1CG060400 Rh1DG064400
rosa_wichuraiana	Rw0G011380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	8
AciI	CCGC	1 cut(s)	41
AcuI	CTGAAG	2 cut(s)	114, 200
AgsI	TTSAA	1 cut(s)	139
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
AoxI	GGCC	1 cut(s)	43
ApaI	GGGCCC	1 cut(s)	47
AseI	ATTAAT	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	2 cut(s)	43, 44
BaeGI	GKGCMC	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	47
BauI	CACGAG	1 cut(s)	129
BglI	GCCNNNNNGGC	1 cut(s)	32
BmgT120I	GGNCC	2 cut(s)	43, 44
BmiI	GGNNCC	1 cut(s)	45
Bse1I	ACTGG	1 cut(s)	112
BseGI	GGATG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	112
BseSI	GKGCMC	1 cut(s)	47
BshFI	GGCC	1 cut(s)	45
BslFI	GGGAC	1 cut(s)	71
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	45
Bsp120I	GGGCCC	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	2 cut(s)	28, 196
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	112
BssMI	GATC	2 cut(s)	28, 196
BssSI	CACGAG	1 cut(s)	129
Bst2BI	CACGAG	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	2 cut(s)	31, 199
BstMBI	GATC	2 cut(s)	28, 196
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	24
Cac8I	GCNNGC	1 cut(s)	43
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	2 cut(s)	43, 44
CviAII	CATG	2 cut(s)	10, 204
CviJI	RGCY	3 cut(s)	45, 92, 134
CviKI_1	RGCY	3 cut(s)	45, 92, 134
DpnI	GATC	2 cut(s)	30, 198
DpnII	GATC	2 cut(s)	28, 196
Eco24I	GRGCYC	1 cut(s)	47
Eco57I	CTGAAG	2 cut(s)	114, 200
EcoT38I	GRGCYC	1 cut(s)	47
FaeI	CATG	2 cut(s)	13, 207
FaiI	YATR	3 cut(s)	11, 73, 205
FalI	AAGNNNNNCTT	1 cut(s)	204
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	2 cut(s)	9, 203
FauI	CCCGC	1 cut(s)	34
FokI	GGATG	1 cut(s)	31
FriOI	GRGCYC	1 cut(s)	47
FspI	TGCGCA	1 cut(s)	8
GlaI	GCGC	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	45
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	2 cut(s)	13, 207
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188I	TCNGA	1 cut(s)	180
Hpy188III	TCNNGA	1 cut(s)	129
Hpy8I	GTNNAC	1 cut(s)	105
HpyAV	CCTTC	3 cut(s)	31, 138, 145
HpyCH4V	TGCA	2 cut(s)	75, 207
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
Hsp92II	CATG	2 cut(s)	13, 207
HspAI	GCGC	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	28, 196
LpnPI	CCDG	3 cut(s)	17, 85, 93
MaeIII	GTNAC	1 cut(s)	171
MalI	GATC	2 cut(s)	30, 198
MboI	GATC	2 cut(s)	28, 196
MhlI	GDGCHC	1 cut(s)	47
MnlI	CCTC	2 cut(s)	9, 186
MseI	TTAA	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	32
NdeII	GATC	2 cut(s)	28, 196
NlaIII	CATG	2 cut(s)	13, 207
NlaIV	GGNNCC	1 cut(s)	45
NsbI	TGCGCA	1 cut(s)	8
NspI	RCATGY	1 cut(s)	207
PshBI	ATTAAT	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	45
PspOMI	GGGCCC	1 cut(s)	43
PspPI	GGNCC	2 cut(s)	43, 44
SaqAI	TTAA	1 cut(s)	122
Sau3AI	GATC	2 cut(s)	28, 196
Sau96I	GGNCC	2 cut(s)	43, 44
SduI	GDGCHC	1 cut(s)	47
SetI	ASST	2 cut(s)	94, 178
SsiI	CCGC	1 cut(s)	41
TaqI	TCGA	1 cut(s)	51
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TspDTI	ATGAA	2 cut(s)	53, 102
VspI	ATTAAT	1 cut(s)	122
XceI	RCATGY	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.