Protein present in Fab1, YOTB, Vac1, and EEA1
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G12350 AT5G19420 AT5G19420 AT5G19420 |
| fragaria_vesca | FvH4_7g02960 FvH4_7g02960 FvH4_7g02960 FvH4_7g02960 |
| malus_domestica | MD02G1288400.v1.1 MD07G1038100.v1.1 MD07G1038400.v1.1 MD13G1037300.v1.1 |
| prunus_persica | Prupe.2G034600_v2.0.a1 Prupe.2G034600_v2.0.a1 Prupe.2G034600_v2.0.a1 |
| pyrus_communis | pycom02g24410 pycom05g01140 pycom07g02640 pycom07g02670 pycom16g06500 |
| rosa_chinensis | RchiOBHm_Chr1g0323931 |
| rosa_laevigata | RLG00000030242 |
| rosa_multiflora | Rmu_co8261369.1_g000001 Rmu_sc0001449.1_g000001 Rmu_sc0011010.1_g000012 Rmu_sc0012343.1_g000006 Rmu_sc0012343.1_g000007 |
| rosa_roxburghii | Rroxscaffold_4G00326110 |
| rosa_rugosa | Rorug01G0040600 |
| rosa_samantha | Rh1AG058500 Rh1BG049600 Rh1CG060400 Rh1DG064400 |
| rosa_wichuraiana | Rw0G011380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 1 cut(s) | 189 |
| AclWI | GGATC | 2 cut(s) | 63, 106 |
| AcuI | CTGAAG | 2 cut(s) | 363, 449 |
| AgsI | TTSAA | 4 cut(s) | 30, 119, 248, 388 |
| AluBI | AGCT | 2 cut(s) | 108, 341 |
| AluI | AGCT | 2 cut(s) | 108, 341 |
| Alw26I | GTCTC | 1 cut(s) | 215 |
| AlwI | GGATC | 2 cut(s) | 63, 106 |
| AoxI | GGCC | 1 cut(s) | 7 |
| AseI | ATTAAT | 1 cut(s) | 371 |
| AspLEI | GCGC | 1 cut(s) | 205 |
| AsuHPI | GGTGA | 1 cut(s) | 230 |
| BauI | CACGAG | 1 cut(s) | 378 |
| BccI | CCATC | 1 cut(s) | 18 |
| BciVI | GTATCC | 1 cut(s) | 264 |
| BcoDI | GTCTC | 1 cut(s) | 215 |
| BfaI | CTAG | 1 cut(s) | 105 |
| BfuI | GTATCC | 1 cut(s) | 264 |
| BpmI | CTGGAG | 1 cut(s) | 215 |
| BpuEI | CTTGAG | 1 cut(s) | 78 |
| Bse1I | ACTGG | 1 cut(s) | 361 |
| BseMII | CTCAG | 3 cut(s) | 197, 225, 255 |
| BseNI | ACTGG | 1 cut(s) | 361 |
| BsgI | GTGCAG | 1 cut(s) | 214 |
| BshFI | GGCC | 1 cut(s) | 9 |
| BsmAI | GTCTC | 1 cut(s) | 215 |
| BsnI | GGCC | 1 cut(s) | 9 |
| Bsp143I | GATC | 3 cut(s) | 68, 98, 445 |
| BspANI | GGCC | 1 cut(s) | 9 |
| BspCNI | CTCAG | 3 cut(s) | 198, 226, 256 |
| BspPI | GGATC | 2 cut(s) | 63, 106 |
| BsrI | ACTGG | 1 cut(s) | 361 |
| BssMI | GATC | 3 cut(s) | 68, 98, 445 |
| BssSI | CACGAG | 1 cut(s) | 378 |
| Bst2BI | CACGAG | 1 cut(s) | 378 |
| Bst4CI | ACNGT | 2 cut(s) | 55, 148 |
| BstDEI | CTNAG | 4 cut(s) | 158, 206, 234, 264 |
| BstHHI | GCGC | 1 cut(s) | 205 |
| BstKTI | GATC | 3 cut(s) | 71, 101, 448 |
| BstMAI | GTCTC | 1 cut(s) | 215 |
| BstMBI | GATC | 3 cut(s) | 68, 98, 445 |
| BstX2I | RGATCY | 2 cut(s) | 68, 98 |
| BstYI | RGATCY | 2 cut(s) | 68, 98 |
| BsuI | GTATCC | 1 cut(s) | 264 |
| BsuRI | GGCC | 1 cut(s) | 9 |
| BtsIMutI | CAGTG | 1 cut(s) | 231 |
| CfoI | GCGC | 1 cut(s) | 205 |
| CviJI | RGCY | 6 cut(s) | 9, 108, 162, 238, 341, 383 |
| CviKI_1 | RGCY | 6 cut(s) | 9, 108, 162, 238, 341, 383 |
| DdeI | CTNAG | 4 cut(s) | 158, 206, 234, 264 |
| DpnI | GATC | 3 cut(s) | 70, 100, 447 |
| DpnII | GATC | 3 cut(s) | 68, 98, 445 |
| Eco57I | CTGAAG | 2 cut(s) | 363, 449 |
| FaiI | YATR | 6 cut(s) | 167, 226, 293, 295, 297, 322 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 453 |
| FspBI | CTAG | 1 cut(s) | 105 |
| GlaI | GCGC | 1 cut(s) | 204 |
| GsuI | CTGGAG | 1 cut(s) | 215 |
| HaeIII | GGCC | 1 cut(s) | 9 |
| HhaI | GCGC | 1 cut(s) | 205 |
| Hin6I | GCGC | 1 cut(s) | 203 |
| HinP1I | GCGC | 1 cut(s) | 203 |
| HinfI | GANTC | 4 cut(s) | 16, 26, 89, 154 |
| HphI | GGTGA | 1 cut(s) | 230 |
| Hpy166II | GTNNAC | 2 cut(s) | 127, 354 |
| Hpy188I | TCNGA | 5 cut(s) | 15, 21, 51, 73, 429 |
| Hpy188III | TCNNGA | 5 cut(s) | 30, 86, 124, 194, 378 |
| Hpy8I | GTNNAC | 2 cut(s) | 127, 354 |
| HpyAV | CCTTC | 4 cut(s) | 132, 262, 387, 394 |
| HpyCH4III | ACNGT | 2 cut(s) | 55, 148 |
| HpyCH4IV | ACGT | 1 cut(s) | 189 |
| HpyCH4V | TGCA | 2 cut(s) | 231, 324 |
| HpyF3I | CTNAG | 4 cut(s) | 158, 206, 234, 264 |
| HpySE526I | ACGT | 1 cut(s) | 189 |
| HspAI | GCGC | 1 cut(s) | 203 |
| Kzo9I | GATC | 3 cut(s) | 68, 98, 445 |
| LmnI | GCTCC | 1 cut(s) | 183 |
| LpnPI | CCDG | 6 cut(s) | 99, 179, 276, 289, 334, 342 |
| MaeI | CTAG | 1 cut(s) | 105 |
| MaeII | ACGT | 1 cut(s) | 189 |
| MaeIII | GTNAC | 1 cut(s) | 420 |
| MalI | GATC | 3 cut(s) | 70, 100, 447 |
| MboI | GATC | 3 cut(s) | 68, 98, 445 |
| MboII | GAAGA | 1 cut(s) | 93 |
| MflI | RGATCY | 2 cut(s) | 68, 98 |
| MlyI | GAGTC | 1 cut(s) | 163 |
| MmeI | TCCRAC | 1 cut(s) | 96 |
| MnlI | CCTC | 4 cut(s) | 48, 166, 267, 435 |
| MseI | TTAA | 1 cut(s) | 371 |
| NdeII | GATC | 3 cut(s) | 68, 98, 445 |
| PfeI | GAWTC | 3 cut(s) | 16, 26, 89 |
| PleI | GAGTC | 1 cut(s) | 162 |
| PpsI | GAGTC | 1 cut(s) | 162 |
| PshBI | ATTAAT | 1 cut(s) | 371 |
| Psp1406I | AACGTT | 1 cut(s) | 189 |
| PsuI | RGATCY | 2 cut(s) | 68, 98 |
| SaqAI | TTAA | 1 cut(s) | 371 |
| Sau3AI | GATC | 3 cut(s) | 68, 98, 445 |
| SchI | GAGTC | 1 cut(s) | 163 |
| SetI | ASST | 7 cut(s) | 110, 192, 254, 265, 308, 343, 427 |
| SmlI | CTYRAG | 1 cut(s) | 93 |
| SmoI | CTYRAG | 1 cut(s) | 93 |
| SspMI | CTAG | 1 cut(s) | 105 |
| TaaI | ACNGT | 2 cut(s) | 55, 148 |
| TaiI | ACGT | 1 cut(s) | 192 |
| TaqI | TCGA | 1 cut(s) | 259 |
| TfiI | GAWTC | 3 cut(s) | 16, 26, 89 |
| Tru1I | TTAA | 1 cut(s) | 371 |
| Tru9I | TTAA | 1 cut(s) | 371 |
| TscAI | CASTG | 1 cut(s) | 238 |
| TspDTI | ATGAA | 1 cut(s) | 351 |
| TspRI | CASTG | 1 cut(s) | 238 |
| VspI | ATTAAT | 1 cut(s) | 371 |
| XspI | CTAG | 1 cut(s) | 105 |