RLG00000030242

Protein present in Fab1, YOTB, Vac1, and EEA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003738
Physical Location & Seq
Forward (+)
58170559 .. 58181344
10786 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030242

Sequence Viewer

Length: 3222 bp
ATGTTGCGCATGGAGAGGATGACTGCCGATCAGGCGAAGGCGGGCCCACTCGAAAGGGACATTCACTTGGCTGGGACTAGGTACTTCCAAATGAGAGCCAGAACCGAAAGGTTTTGTCCGACTAAAGCCTTAACACATACAGCAAAAACCAGCCAACCTGGAAAGAAGGAAAGGTTTATACAATTTTGGGGCTATTTCTTTGCTTACCCTTACTGTCCAATCTTTCAAAGGTATCCTCGGCCTGAGAAGGAATATCAGTCATTTTCTCTTATATATGATGACAGGTCTTTAGATTTGATATGTAAGGATAAAGATGAAGCTGAAGTCTGGTTTACTGGTCTAAAAGCATTAATATCACGCGGCCTTCAACAGAAGGGAAGAGCAGAAACAAAAAGTGGAGTTACCTCTGAAGCAACTAGTCCAAGATCACACACGCAAAGAAGTTCTCCTTTGAGCTCTCCATTTTGTAGTGGTGATAGTTCACAGAAGGATGAAGTGGAACCCTTTCATCCTCATGCTACAGCTGAAAGCCCTCCTAAAGTCCATTTGGAGAAGGCTTTATCAGATGCCATGTTATATGCGCTCCCTCCAAAAGTTCCCTTTCCTTCAGATTCTGCTTCTGGCTCATTTCAGTCTCTGTCATCAGGAGGCTCAGATGGAATGAATGGTCGAACAAAGGGTGCAGGGACTGATGCTTTTAGAGTTAGTTTATCAAGTGCAGTTAGCTCATCAAGTCAAGGCTCTGGTCATGATGACGGTGATGCTTTAGGGGATGTTTTCATTTGGGGGGAAGGCGTAGGTGATTGCATTTTGGGTGGTGGATTACATAGAGTTGGTAGTTCTTCTAGTTCCAAGACAGACTCTTTTGTACCTAAAGTCTTGGAATCTGCTGTTGTACTTGATGTTCAAAGTATAGCTTGTGGGGGAAGACATGCTGCTTTTGTAACCAAGCAAGGAGAGGTATTTTCTTGGGGTGAAGAATTAGGAGGCAGACTCGGACATGGTGTAGATGCTGATATCTCCCAACCAAAGCTCATAGAAGGTCTCAAAAATCTTAACGTAGAATTTTTAGCCTGTGGGGAGTACCATTCTTGTGCAGTAACACTCTCTGGTGACATATACACATGGGGTGGCAGTACTTCTAATTTTGCCCTCCTTGGGCATGGGTTTCAATCGAGTCAGTGGGTCCCAAAAAAGTTAAATGGACCTTTAGAGGGAATTCATGTCTCTTCAGTTTCTTGTGGACCATGGCACACAGCCGTTGTGACCTCTGCTGGTCAATTGTTTACTTTTGGTGATGGAACTTTTGGTGTTCTAGGTCATGGGGATCGCAAGAGTATATCAGTTCCAAGGGAAGTTGAGTCCCTTAAAGGCCTTCGTACTGTTCGAGTAGCTTGTGGTGTTTGGCACTCTGCAGCAGTAATTGAAGTAATGGTGGGATCATCAAGTTCCAGCAACTGTTCTTCTGGGAAGCTTTTTACATGGGGAGATGGAGATAAAGGTCGACTTGGGCATGGTGATAAGGATGCAAGACTTGTGCCCACTTGCGTTGCTGCTTTGGTTGACCCGAACTTCTGTCAAGTTGCGTGTGGACAAAGTCTGACTGTTGCGCTTACAACAACTGGCCATGTTTACACAATGGGAAGCCCTGTTTTTGGTCAATTAGGGATCCCTCAAGCTGATGGGAAACTCCCCCGCCGTGTCGAGGGAAAGCTAATGAAGAATTTTGTTGAAGAAATTGCTTGTGGTGCTTATCATGTTGCAGTCTTAACTTCGAGAACTGAAGTTTATACTTGGGGAAAGGGTGCAAATGGTAGATTAGGTCTTGGGGATACAGAGGATAAATTTTCACCAACATTAGTTGAAGCTTTAAGAGACAAACAAGTCAAAAGTATCGTTTGTGGCACTAACTTTACAGCAGCCATCTGTCTTCATAAATGGGTCTCTGGTGTCGATCAATCAATGTGTTCTGGCTGTCGCCTTCCGTTTAATTTTAAAAGAAAAAGACACAACTGCTACAATTGTGGACTTGTATTATGCCATTCATGCAGTAGCAAAAAGTGCCTCAAGGCTTCGATGGCACCAAATCCAAACAAACCATATCGAGTTTGTGATAATTGTTTTGGTAAACTCAGAAAGGCCTCTGAAACCAACTCTTCATCTGGCTCCGCTTTGAGAAAAGGAAGTGTGAATCAGGGATTTGCTGAACTGAGCGAAAATAATATTAAAGATTTGGACACTGGTTCATCCACAAGAAACAAGAAACTAGATTTTAGCAGTACTTGTGTTGCTCCCTTTCCAAATGGCATTTCTGAGCGCCGTGCATTCAGTGGGACTAAATCTTTCAACCCAGTATTTGGATCTTCCAAAAAGTTTTTCTCAGCTTCTCTTCCTGGATCAAGAATTGCTTCTCGAGCAACATCACCAACATCGAGACGATCTAGTCCACCTCGTGCCAAAACGCCAACCCCTGCTCTCTCAGGGATCACATTGCCAAATGTTGTGGAATATGCTAGAGGGACAAATGACGGTCTAAGTGAAGAAATTATTAAACTAAGAGCTCAGGTCGAAGATCTTACTCGTAAAAGTCGAGTTCAAGATATTGAGCTGGAAAGAACTACCCACCAATTGAAGGAGGCTGTCAAAGTAGCAGACGAAGAAGCTTCAAAATGTAAAGCAGCAAAGGAAGTAATTAAGTCGCTCACAGCTCAATTAAAGGAAATGGCTGAAAGGTTACCCATTGGGACAGCAAGAAGCAGCGACACACGTCCATTAGGCTTTTCTAGTCCTACCCATGACGTTTCTACTACAGCCATTGAGAAAGCAAGCAGTCCATTGACCTTCCATGAACCACATTCAATTGCATCAAATAGCCTGGTGGTTTCTAATGTATCAAGGATTTTGAGTAATCATGCCTCAAATCCCACTGAAGTGGCAAATTCGGAAGCAACTACTAGGCATAAGAGCAGAGGAACAAAAGCTGAAACCACAAATGGGGATGAATGGGTTGAGCAAGATGAGCCTGGTGTATATATTACCCTGGTTTCCTTGCCCACAGGAGTCAAAGATCTCAAGCGTGTCCGCTTCAGTCGAAAGCGGTTCAGTGAGAAACAAGCAGAACAGTGGTGGGCGGCAAATAGGACTAGAGTATATCAGCAGTACAATGTTCCTGTGGTTGAAAAATCTAGTATTCCCATAGGAAGAGAAGGGTTAGCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

1074

Amino Acids

115.97

Weight (kDa)

9.03

Isoelectric Point (pI)

41.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 258 - 641 2.7e-81 RCC1-like domain
RCC1_2 PF13540 302 - 325 2.5e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 318 - 367 6.7e-10 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 357 - 380 4.1e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 370 - 422 9.7e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 409 - 437 8.2e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 426 - 474 4.4e-14 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 489 - 538 6.2e-14 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 542 - 590 3.1e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 595 - 642 1.6e-14 Regulator of chromosome condensation (RCC1) repeat
FYVE PF01363 646 - 712 2.2e-14 FYVE zinc finger
BRX_N PF13713 886 - 919 1.6e-15 Transcription factor BRX N-terminal domain
BRX_assoc PF16627 926 - 990 2.1e-11 Unstructured region between BRX_N and BRX domain
BRX PF08381 1000 - 1054 1.9e-28 Transcription factor regulating root and shoot growth via Pin3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1883, 2442
Acc16I TGCGCA 1 cut(s) 8
AccB1I GGYRCC 1 cut(s) 2080
AccB7I CCANNNNNTGG 1 cut(s) 2357
AccI GTMKAC 1 cut(s) 1504
AccII CGCG 1 cut(s) 360
AciI CCGC 7 cut(s) 41, 360, 1696, 2169, 3082, 3097, 3131
AclWI GGATC 7 cut(s) 1335, 1447, 1663, 1676, 2368, 2404, 2492
AcoI YGGCCR 1 cut(s) 1624
AcsI RAATTY 5 cut(s) 1064, 1218, 1723, 1844, 2938
AcuI CTGAAG 7 cut(s) 342, 429, 591, 1215, 1803, 2949, 3070
AdeI CACNNNGTG 1 cut(s) 2453
AfaI GTAC 8 cut(s) 83, 870, 897, 1085, 1138, 1381, 2281, 3161
AfiI CCNNNNNNNGG 7 cut(s) 1158, 1214, 1655, 1705, 2357, 2632, 2994
AflIII ACRYGT 1 cut(s) 2765
AhlI ACTAGT 1 cut(s) 416
AjiI CACGTC 1 cut(s) 2768
AjnI CCWGG 5 cut(s) 157, 2392, 2874, 3022, 3039
AjuI GAANNNNNNNTTGG 4 cut(s) 2293, 2325, 2360, 2392
AleI CACNNNNGTG 1 cut(s) 2930
Alw21I GWGCWC 2 cut(s) 458, 2563
Alw26I GTCTC 6 cut(s) 639, 1049, 1231, 1869, 1948, 2428
AlwI GGATC 7 cut(s) 1335, 1447, 1663, 1676, 2368, 2404, 2492
AlwNI CAGNNNCTG 4 cut(s) 614, 637, 689, 1458
Ama87I CYCGRG 1 cut(s) 2412
AoxI GGCC 6 cut(s) 43, 239, 361, 1372, 1624, 2139
ApaI GGGCCC 1 cut(s) 47
ApeKI GCWGC 6 cut(s) 935, 1415, 1553, 1919, 2678, 2757
ApoI RAATTY 5 cut(s) 1064, 1218, 1723, 1844, 2938
AseI ATTAAT 1 cut(s) 350
Asp700I GAANNNNTTC 2 cut(s) 504, 2407
AspLEI GCGC 4 cut(s) 9, 583, 1612, 2319
AspS9I GGNCC 5 cut(s) 43, 44, 1186, 1205, 1244
AsuHPI GGTGA 9 cut(s) 485, 770, 812, 986, 1124, 1307, 1529, 1842, 2415
AvaI CYCGRG 1 cut(s) 2412
AvaII GGWCC 3 cut(s) 1186, 1205, 1244
BaeGI GKGCMC 2 cut(s) 47, 1542
BalI TGGCCA 1 cut(s) 1626
BamHI GGATCC 1 cut(s) 1668
BanI GGYRCC 1 cut(s) 2080
BanII GRGCYC 3 cut(s) 47, 458, 2563
BauI CACGAG 1 cut(s) 2451
BbsI GAAGAC 2 cut(s) 934, 1922
Bbv12I GWGCWC 2 cut(s) 458, 2563
BbvI GCAGC 6 cut(s) 922, 1427, 1540, 1931, 2690, 2769
BccI CCATC 6 cut(s) 650, 1292, 1484, 1676, 1931, 2071
BceAI ACGGC 3 cut(s) 1244, 1683, 2304
BciT130I CCWGG 5 cut(s) 159, 2394, 2876, 3024, 3041
BciVI GTATCC 2 cut(s) 243, 1825
BcoDI GTCTC 6 cut(s) 639, 1049, 1231, 1869, 1948, 2428
BcuI ACTAGT 1 cut(s) 416
BfmI CTRYAG 3 cut(s) 519, 1413, 2808
BfoI RGCGCY 1 cut(s) 2320
BfuI GTATCC 2 cut(s) 243, 1825
BglI GCCNNNNNGGC 1 cut(s) 32
BglII AGATCT 2 cut(s) 2572, 3067
BisI GCNGC 8 cut(s) 361, 936, 1416, 1554, 1920, 2679, 2758, 3132
BlsI GCNGC 8 cut(s) 362, 937, 1417, 1555, 1921, 2680, 2759, 3133
BmcAI AGTACT 2 cut(s) 1138, 2281
Bme1390I CCNGG 5 cut(s) 159, 2394, 2876, 3024, 3041
Bme18I GGWCC 3 cut(s) 1186, 1205, 1244
BmeT110I CYCGRG 1 cut(s) 2412
BmgBI CACGTC 1 cut(s) 2768
BmgT120I GGNCC 5 cut(s) 43, 44, 1186, 1205, 1244
BmiI GGNNCC 7 cut(s) 45, 501, 1187, 1188, 1670, 2082, 2167
BmrFI CCNGG 5 cut(s) 159, 2394, 2876, 3024, 3041
BmrI ACTGGG 1 cut(s) 2345
BmsI GCATC 6 cut(s) 556, 682, 751, 1000, 1516, 2873
BmuI ACTGGG 1 cut(s) 2345
BoxI GACNNNNGTC 1 cut(s) 2766
BpiI GAAGAC 2 cut(s) 934, 1922
BplI GAGNNNNNCTC 2 cut(s) 978, 1010
Bpu10I CCTNAGC 1 cut(s) 2562
BpuEI CTTGAG 3 cut(s) 1659, 2051, 3056
BsaI GGTCTC 2 cut(s) 1049, 1948
BsaJI CCNNGG 5 cut(s) 236, 1156, 1247, 1349, 3039
Bsc4I CCNNNNNNNGG 7 cut(s) 1158, 1214, 1655, 1705, 2357, 2632, 2994
Bse1I ACTGG 4 cut(s) 340, 1627, 2245, 2351
Bse3DI GCAATG 1 cut(s) 2489
BseBI CCWGG 5 cut(s) 159, 2394, 2876, 3024, 3041
BseDI CCNNGG 5 cut(s) 236, 1156, 1247, 1349, 3039
BseGI GGATG 7 cut(s) 24, 496, 508, 778, 1531, 2246, 3004
BseLI CCNNNNNNNGG 7 cut(s) 1158, 1214, 1655, 1705, 2357, 2632, 2994
BseMI GCAATG 1 cut(s) 2489
BseMII CTCAG 8 cut(s) 234, 666, 2146, 2201, 2304, 2394, 2493, 2576
BseNI ACTGG 4 cut(s) 340, 1627, 2245, 2351
BseSI GKGCMC 2 cut(s) 47, 1542
BseXI GCAGC 6 cut(s) 922, 1427, 1540, 1931, 2690, 2769
BseYI CCCAGC 1 cut(s) 71
BsgI GTGCAG 3 cut(s) 702, 738, 1116
Bsh1236I CGCG 1 cut(s) 360
BshFI GGCC 6 cut(s) 45, 241, 363, 1374, 1626, 2141
BshNI GGYRCC 1 cut(s) 2080
BsiHKAI GWGCWC 2 cut(s) 458, 2563
BsiHKCI CYCGRG 1 cut(s) 2412
BslFI GGGAC 8 cut(s) 71, 88, 700, 1172, 1348, 2347, 2533, 2758
BslI CCNNNNNNNGG 7 cut(s) 1158, 1214, 1655, 1705, 2357, 2632, 2994
BsmAI GTCTC 6 cut(s) 639, 1049, 1231, 1869, 1948, 2428
BsmBI CGTCTC 1 cut(s) 2428
BsmFI GGGAC 8 cut(s) 71, 88, 700, 1172, 1348, 2347, 2533, 2758
BsmI GAATGC 1 cut(s) 2324
BsnI GGCC 6 cut(s) 45, 241, 363, 1374, 1626, 2141
Bso31I GGTCTC 2 cut(s) 1049, 1948
BsoBI CYCGRG 1 cut(s) 2412
Bsp120I GGGCCC 1 cut(s) 43
Bsp1286I GDGCHC 4 cut(s) 47, 458, 1542, 2563
Bsp19I CCATGG 1 cut(s) 1247
BspACI CCGC 7 cut(s) 41, 360, 1696, 2169, 3082, 3097, 3131
BspANI GGCC 6 cut(s) 45, 241, 363, 1374, 1626, 2141
BspCNI CTCAG 8 cut(s) 235, 665, 2145, 2202, 2305, 2393, 2492, 2575
BspFNI CGCG 1 cut(s) 360
BspHI TCATGA 1 cut(s) 748
BspLI GGNNCC 7 cut(s) 45, 501, 1187, 1188, 1670, 2082, 2167
BspMAI CTGCAG 1 cut(s) 1417
BspPI GGATC 7 cut(s) 1335, 1447, 1663, 1676, 2368, 2404, 2492
BspQI GCTCTTC 1 cut(s) 373
BspT107I GGYRCC 1 cut(s) 2080
BspTNI GGTCTC 2 cut(s) 1049, 1948
BsrDI GCAATG 1 cut(s) 2489
BsrI ACTGG 4 cut(s) 340, 1627, 2245, 2351
BssECI CCNNGG 5 cut(s) 236, 1156, 1247, 1349, 3039
BssSI CACGAG 1 cut(s) 2451
BssT1I CCWWGG 3 cut(s) 1156, 1247, 1349
Bst2BI CACGAG 1 cut(s) 2451
Bst2UI CCWGG 5 cut(s) 159, 2394, 2876, 3024, 3041
Bst4CI ACNGT 7 cut(s) 215, 758, 1384, 1460, 1606, 2531, 3123
Bst6I CTCTTC 5 cut(s) 373, 1234, 2161, 2394, 3196
BstAPI GCANNNNNTGC 1 cut(s) 2061
BstC8I GCNNGC 2 cut(s) 43, 2827
BstDSI CCRYGG 1 cut(s) 1247
BstEII GGTNACC 1 cut(s) 2733
BstF5I GGATG 7 cut(s) 24, 496, 508, 778, 1531, 2246, 3004
BstFNI CGCG 1 cut(s) 360
BstH2I RGCGCY 1 cut(s) 2320
BstHHI GCGC 4 cut(s) 9, 583, 1612, 2319
BstMAI GTCTC 6 cut(s) 639, 1049, 1231, 1869, 1948, 2428
BstMWI GCNNNNNNNGC 7 cut(s) 32, 1748, 2046, 2061, 2078, 2414, 3019
BstNI CCWGG 5 cut(s) 159, 2394, 2876, 3024, 3041
BstNSI RCATGY 1 cut(s) 935
BstPAI GACNNNNGTC 1 cut(s) 2766
BstPI GGTNACC 1 cut(s) 2733
BstSCI CCNGG 5 cut(s) 157, 2392, 2874, 3022, 3039
BstSFI CTRYAG 3 cut(s) 519, 1413, 2808
BstSLI GKGCMC 2 cut(s) 47, 1542
BstUI CGCG 1 cut(s) 360
BstV1I GCAGC 6 cut(s) 922, 1427, 1540, 1931, 2690, 2769
BstV2I GAAGAC 2 cut(s) 934, 1922
BstX2I RGATCY 4 cut(s) 1668, 2360, 2572, 3067
BstXI CCANNNNNNTGG 1 cut(s) 2932
BstYI RGATCY 4 cut(s) 1668, 2360, 2572, 3067
BsuI GTATCC 2 cut(s) 243, 1825
BsuRI GGCC 6 cut(s) 45, 241, 363, 1374, 1626, 2141
BtgI CCRYGG 1 cut(s) 1247
BtrI CACGTC 1 cut(s) 2768
BtsCI GGATG 7 cut(s) 24, 496, 508, 778, 1531, 2246, 3004
BtsIMutI CAGTG 6 cut(s) 1187, 2238, 2335, 2925, 3109, 3128
Cac8I GCNNGC 2 cut(s) 43, 2827
CaiI CAGNNNCTG 4 cut(s) 614, 637, 689, 1458
CciI TCATGA 1 cut(s) 748
CfoI GCGC 4 cut(s) 9, 583, 1612, 2319
Cfr13I GGNCC 5 cut(s) 43, 44, 1186, 1205, 1244
Csp6I GTAC 8 cut(s) 82, 869, 896, 1084, 1137, 1380, 2280, 3160
CspCI CAANNNNNGTGG 4 cut(s) 1531, 1566, 2484, 2519
CviQI GTAC 8 cut(s) 82, 869, 896, 1084, 1137, 1380, 2280, 3160
DraI TTTAAA 1 cut(s) 1996
DraIII CACNNNGTG 1 cut(s) 2453
DrdI GACNNNNNNGTC 2 cut(s) 1883, 2442
DseDI GACNNNNNNGTC 2 cut(s) 1883, 2442
EaeI YGGCCR 1 cut(s) 1624
Eam1104I CTCTTC 5 cut(s) 373, 1234, 2161, 2394, 3196
EarI CTCTTC 5 cut(s) 373, 1234, 2161, 2394, 3196
Ecl136II GAGCTC 2 cut(s) 456, 2561
Eco130I CCWWGG 3 cut(s) 1156, 1247, 1349
Eco147I AGGCCT 2 cut(s) 1374, 2141
Eco24I GRGCYC 3 cut(s) 47, 458, 2563
Eco31I GGTCTC 2 cut(s) 1049, 1948
Eco32I GATATC 1 cut(s) 1018
Eco47I GGWCC 3 cut(s) 1186, 1205, 1244
Eco53kI GAGCTC 2 cut(s) 456, 2561
Eco57I CTGAAG 7 cut(s) 342, 429, 591, 1215, 1803, 2949, 3070
Eco88I CYCGRG 1 cut(s) 2412
Eco91I GGTNACC 1 cut(s) 2733
EcoICRI GAGCTC 2 cut(s) 456, 2561
EcoO109I RGGNCCY 1 cut(s) 1186
EcoO65I GGTNACC 1 cut(s) 2733
EcoRI GAATTC 1 cut(s) 1218
EcoRII CCWGG 5 cut(s) 157, 2392, 2874, 3022, 3039
EcoRV GATATC 1 cut(s) 1018
EcoT14I CCWWGG 3 cut(s) 1156, 1247, 1349
EcoT38I GRGCYC 3 cut(s) 47, 458, 2563
ErhI CCWWGG 3 cut(s) 1156, 1247, 1349
Esp3I CGTCTC 1 cut(s) 2428
FalI AAGNNNNNCTT 8 cut(s) 433, 465, 901, 933, 1491, 1523, 2392, 2424
FaqI GGGAC 8 cut(s) 71, 88, 700, 1172, 1348, 2347, 2533, 2758
FauI CCCGC 2 cut(s) 34, 1703
FblI GTMKAC 1 cut(s) 1504
Fnu4HI GCNGC 8 cut(s) 361, 936, 1416, 1554, 1920, 2679, 2758, 3132
FokI GGATG 7 cut(s) 31, 495, 503, 785, 1538, 2233, 3011
FriOI GRGCYC 3 cut(s) 47, 458, 2563
Fsp4HI GCNGC 8 cut(s) 361, 936, 1416, 1554, 1920, 2679, 2758, 3132
FspI TGCGCA 1 cut(s) 8
GlaI GCGC 4 cut(s) 8, 582, 1611, 2318
GluI GCNGC 8 cut(s) 361, 936, 1416, 1554, 1920, 2679, 2758, 3132
GsaI CCCAGC 1 cut(s) 75
HaeII RGCGCY 1 cut(s) 2320
HaeIII GGCC 6 cut(s) 45, 241, 363, 1374, 1626, 2141
HhaI GCGC 4 cut(s) 9, 583, 1612, 2319
Hin6I GCGC 4 cut(s) 7, 581, 1610, 2317
HinP1I GCGC 4 cut(s) 7, 581, 1610, 2317
HincII GTYRAC 2 cut(s) 1505, 1564
HindII GTYRAC 2 cut(s) 1505, 1564
HindIII AAGCTT 3 cut(s) 1472, 1866, 2661
HinfI GANTC 8 cut(s) 611, 860, 884, 993, 1177, 1361, 2191, 3060
HphI GGTGA 9 cut(s) 485, 770, 812, 986, 1124, 1307, 1529, 1842, 2415
Hpy188III TCNNGA 7 cut(s) 645, 749, 1776, 2400, 2412, 2433, 2597
HpyCH4III ACNGT 7 cut(s) 215, 758, 1384, 1460, 1606, 2531, 3123
HpyCH4IV ACGT 3 cut(s) 1059, 2767, 2799
HpyF10VI GCNNNNNNNGC 7 cut(s) 32, 1748, 2046, 2061, 2078, 2414, 3019
HpySE526I ACGT 3 cut(s) 1059, 2767, 2799
HspAI GCGC 4 cut(s) 7, 581, 1610, 2317
KflI GGGWCCC 1 cut(s) 1186
LguI GCTCTTC 1 cut(s) 373
LmnI GCTCC 3 cut(s) 588, 2171, 2296
Lsp1109I GCAGC 6 cut(s) 922, 1427, 1540, 1931, 2690, 2769
LweI GCATC 6 cut(s) 556, 682, 751, 1000, 1516, 2873
MaeII ACGT 3 cut(s) 1059, 2767, 2799
MaeIII GTNAC 6 cut(s) 400, 943, 1099, 1112, 1264, 2733
MfeI CAATTG 4 cut(s) 1280, 2020, 2627, 2859
MflI RGATCY 4 cut(s) 1668, 2360, 2572, 3067
MhlI GDGCHC 4 cut(s) 47, 458, 1542, 2563
MlsI TGGCCA 1 cut(s) 1626
MluNI TGGCCA 1 cut(s) 1626
MlyI GAGTC 5 cut(s) 854, 987, 1186, 1370, 3069
MmeI TCCRAC 1 cut(s) 143
Mox20I TGGCCA 1 cut(s) 1626
MroXI GAANNNNTTC 2 cut(s) 504, 2407
MscI TGGCCA 1 cut(s) 1626
MslI CAYNNNNRTG 3 cut(s) 513, 1092, 2930
Msp20I TGGCCA 1 cut(s) 1626
MspA1I CMGCKG 1 cut(s) 524
MspR9I CCNGG 5 cut(s) 159, 2394, 2876, 3024, 3041
MunI CAATTG 4 cut(s) 1280, 2020, 2627, 2859
Mva1269I GAATGC 1 cut(s) 2324
MvaI CCWGG 5 cut(s) 159, 2394, 2876, 3024, 3041
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 7 cut(s) 32, 1748, 2046, 2061, 2078, 2414, 3019
NcoI CCATGG 1 cut(s) 1247
NlaIV GGNNCC 7 cut(s) 45, 501, 1187, 1188, 1670, 2082, 2167
NmeAIII GCCGAG 1 cut(s) 217
NmuCI GTSAC 2 cut(s) 1112, 1264
NsbI TGCGCA 1 cut(s) 8
NspI RCATGY 1 cut(s) 935
OliI CACNNNNGTG 1 cut(s) 2930
PaeR7I CTCGAG 1 cut(s) 2412
PagI TCATGA 1 cut(s) 748
PceI AGGCCT 2 cut(s) 1374, 2141
PciSI GCTCTTC 1 cut(s) 373
PcsI WCGNNNNNNNCGW 2 cut(s) 1384, 2587
PctI GAATGC 1 cut(s) 2324
PdmI GAANNNNTTC 2 cut(s) 504, 2407
PfeI GAWTC 3 cut(s) 611, 884, 2191
PflFI GACNNNGTC 1 cut(s) 1596
PflMI CCANNNNNTGG 1 cut(s) 2357
PfoI TCCNGGA 1 cut(s) 2392
PkrI GCNGC 8 cut(s) 362, 937, 1417, 1555, 1921, 2680, 2759, 3133
PleI GAGTC 5 cut(s) 854, 987, 1185, 1369, 3068
PpsI GAGTC 5 cut(s) 854, 987, 1185, 1369, 3068
PpuMI RGGWCCY 1 cut(s) 1186
PshAI GACNNNNGTC 1 cut(s) 2766
PshBI ATTAAT 1 cut(s) 350
Psp124BI GAGCTC 2 cut(s) 458, 2563
Psp5II RGGWCCY 1 cut(s) 1186
Psp6I CCWGG 5 cut(s) 157, 2392, 2874, 3022, 3039
PspEI GGTNACC 1 cut(s) 2733
PspFI CCCAGC 1 cut(s) 71
PspGI CCWGG 5 cut(s) 157, 2392, 2874, 3022, 3039
PspN4I GGNNCC 7 cut(s) 45, 501, 1187, 1188, 1670, 2082, 2167
PspOMI GGGCCC 1 cut(s) 43
PspPI GGNCC 5 cut(s) 43, 44, 1186, 1205, 1244
PspPPI RGGWCCY 1 cut(s) 1186
PsrI GAACNNNNNNTAC 2 cut(s) 888, 920
PstI CTGCAG 1 cut(s) 1417
PstNI CAGNNNCTG 4 cut(s) 614, 637, 689, 1458
PsuI RGATCY 4 cut(s) 1668, 2360, 2572, 3067
PsyI GACNNNGTC 1 cut(s) 1596
PvuII CAGCTG 1 cut(s) 524
RsaI GTAC 8 cut(s) 83, 870, 897, 1085, 1138, 1381, 2281, 3161
RsaNI GTAC 8 cut(s) 82, 869, 896, 1084, 1137, 1380, 2280, 3160
RseI CAYNNNNRTG 3 cut(s) 513, 1092, 2930
SacI GAGCTC 2 cut(s) 458, 2563
SalI GTCGAC 1 cut(s) 1503
SapI GCTCTTC 1 cut(s) 373
SatI GCNGC 8 cut(s) 361, 936, 1416, 1554, 1920, 2679, 2758, 3132
Sau96I GGNCC 5 cut(s) 43, 44, 1186, 1205, 1244
ScaI AGTACT 2 cut(s) 1138, 2281
SchI GAGTC 5 cut(s) 854, 987, 1186, 1370, 3069
ScrFI CCNGG 5 cut(s) 159, 2394, 2876, 3024, 3041
SduI GDGCHC 4 cut(s) 47, 458, 1542, 2563
SfaNI GCATC 6 cut(s) 556, 682, 751, 1000, 1516, 2873
SfcI CTRYAG 3 cut(s) 519, 1413, 2808
Sfr274I CTCGAG 1 cut(s) 2412
SinI GGWCC 3 cut(s) 1186, 1205, 1244
SlaI CTCGAG 1 cut(s) 2412
SmiMI CAYNNNNRTG 3 cut(s) 513, 1092, 2930
SmlI CTYRAG 4 cut(s) 1674, 2066, 2412, 3071
SmoI CTYRAG 4 cut(s) 1674, 2066, 2412, 3071
SpeI ACTAGT 1 cut(s) 416
SseBI AGGCCT 2 cut(s) 1374, 2141
SsiI CCGC 7 cut(s) 41, 360, 1696, 2169, 3082, 3097, 3131
SspI AATATT 1 cut(s) 2224
SstI GAGCTC 2 cut(s) 458, 2563
StuI AGGCCT 2 cut(s) 1374, 2141
StyD4I CCNGG 5 cut(s) 157, 2392, 2874, 3022, 3039
StyI CCWWGG 3 cut(s) 1156, 1247, 1349
TaaI ACNGT 7 cut(s) 215, 758, 1384, 1460, 1606, 2531, 3123
TaiI ACGT 3 cut(s) 1062, 2770, 2802
TatI WGTACW 4 cut(s) 895, 1136, 2279, 3159
TauI GCSGC 2 cut(s) 363, 3134
TfiI GAWTC 3 cut(s) 611, 884, 2191
TscAI CASTG 6 cut(s) 1187, 2245, 2335, 2932, 3109, 3128
TseFI GTSAC 2 cut(s) 1112, 1264
TseI GCWGC 6 cut(s) 935, 1415, 1553, 1919, 2678, 2757
Tsp45I GTSAC 2 cut(s) 1112, 1264
TspGWI ACGGA 1 cut(s) 1974
TspRI CASTG 6 cut(s) 1187, 2245, 2335, 2932, 3109, 3128
Tth111I GACNNNGTC 1 cut(s) 1596
Van91I CCANNNNNTGG 1 cut(s) 2357
VpaK11BI GGWCC 3 cut(s) 1186, 1205, 1244
VspI ATTAAT 1 cut(s) 350
XapI RAATTY 5 cut(s) 1064, 1218, 1723, 1844, 2938
XceI RCATGY 1 cut(s) 935
XhoI CTCGAG 1 cut(s) 2412
XmiI GTMKAC 1 cut(s) 1504
XmnI GAANNNNTTC 2 cut(s) 504, 2407
ZrmI AGTACT 2 cut(s) 1138, 2281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.