Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003738

Physical Location & Seq

Genomic Coordinates Reverse (-)

3127238 .. 3129912

Gene Structure 2675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1038100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGTGTTATGGCTGTCGCCTTCCATTTAATTTTAAAAGAAAAAGACACAATTGTGATAATTGTGGACTTGTGCTATGCCATTCATGCAGCAGCAAAAAGTGTCTCAAGGCTTCCATGGCACCAAACCCAAACAAGCCTTATCGTGTCTGCGATAACTGTTTTGCAAAACTTCGGAGGGCCACTGAAACCAACTCTTCATCTGGGTCTGCTATTAGTAGAAGAGCAAGTATGAGTCAGGGATTCAACGAACTGATTCAAAACAATTTTAAAGAAATGGAAAGTGGATCTTCCAAAAGAAACAAGAAAATGGATTTCAGCAGCAATCGTGTTATTCCCATTGCAAATGGAGTTTCTGAGCCTCGAGCACTCGATGGATCATCCAAAATGTTTTTCTCAGCTCCTTCAGGGCTTACTCTTCCAAAAGTTGGGGATGATGCTAAAAGGAAAAATGTCAGTCTGAGTGAAGAAGTTCTAAAATTAAAAGCTCAGGTTGAAGATCTTACTCGTAAAGCTCAACTTCGAGAAATTGAGATGGAAAAAACTGGCCAACAGTTGAAGGAGGCTCTGAAAGTAGCGGGGGAAGAAACTGTGAAATGCAAAGCAGCAAAGGAAGTAATTAAGTCGCTCACAGCCCAAAAAGCCAGAAGGAGAGTTTGGTGTCTCAAGGCTTCGCCAAAAAAAAAAGGGAAAATTTCTGAAAGGTTACCAATTGGAACAGCATTTGTATCGAGCAGTGAGAAAATTTCTGATGTGCCACGGGCCACTTCTAATCACACTGAAGTGGCACATTCAGAAGCAACAGCTAGGCATAAAAACAGAGGAGCAAAAACTGAAACAGCACAAGGGGTTGAATGGATTGAGCAAGATGAGCCTGGTGTATATATTACCCTTGTTTACTTGCCTGGAGGTGTCAAAGATCTCAAGCGTGTTCGCTTCAGTCGAAGGCGGTTCAGCGAGAAACAAGCAGAGCAGTGGTGGGCGGCAAATAGGGGTAGAGTATATCAGCAGTACAATGTTCGGGCGGTTCAAAAATCCCAGTATTCCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

350

Amino Acids

39.18

Weight (kDa)

9.9

Isoelectric Point (pI)

53.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FYVE	PF01363	2 - 58	2.5e-12	FYVE zinc finger
BRX_N	PF13713	194 - 212	4.4e-06	Transcription factor BRX N-terminal domain
BRX	PF08381	284 - 337	2.3e-28	Transcription factor regulating root and shoot growth via Pin3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12350 AT5G19420 AT5G19420 AT5G19420
fragaria_vesca	FvH4_7g02960 FvH4_7g02960 FvH4_7g02960 FvH4_7g02960
malus_domestica	MD02G1288400.v1.1 MD07G1038100.v1.1 MD07G1038400.v1.1 MD13G1037300.v1.1
prunus_persica	Prupe.2G034600_v2.0.a1 Prupe.2G034600_v2.0.a1 Prupe.2G034600_v2.0.a1
pyrus_communis	pycom02g24410 pycom05g01140 pycom07g02640 pycom07g02670 pycom16g06500
rosa_chinensis	RchiOBHm_Chr1g0323931
rosa_laevigata	RLG00000030242
rosa_multiflora	Rmu_co8261369.1_g000001 Rmu_sc0001449.1_g000001 Rmu_sc0011010.1_g000012 Rmu_sc0012343.1_g000006 Rmu_sc0012343.1_g000007
rosa_roxburghii	Rroxscaffold_4G00326110
rosa_rugosa	Rorug01G0040600
rosa_samantha	Rh1AG058500 Rh1BG049600 Rh1CG060400 Rh1DG064400
rosa_wichuraiana	Rw0G011380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	118
AccB7I	CCANNNNNTGG	1 cut(s)	425
AciI	CCGC	4 cut(s)	575, 946, 980, 1022
AclWI	GGATC	2 cut(s)	292, 382
AcoI	YGGCCR	1 cut(s)	544
AcsI	RAATTY	2 cut(s)	690, 741
AcuI	CTGAAG	3 cut(s)	387, 798, 919
AfaI	GTAC	1 cut(s)	1010
AfiI	CCNNNNNNNGG	1 cut(s)	425
AgsI	TTSAA	6 cut(s)	244, 257, 494, 556, 851, 1028
AjnI	CCWGG	2 cut(s)	871, 901
AjuI	GAANNNNNNNTTGG	4 cut(s)	374, 406, 637, 669
AleI	CACNNNNGTG	2 cut(s)	51, 779
AluBI	AGCT	4 cut(s)	398, 485, 512, 803
AluI	AGCT	4 cut(s)	398, 485, 512, 803
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	2 cut(s)	107, 665
AlwI	GGATC	2 cut(s)	292, 382
Ama87I	CYCGRG	1 cut(s)	360
AoxI	GGCC	3 cut(s)	177, 544, 759
ApeKI	GCWGC	4 cut(s)	87, 90, 318, 602
ApoI	RAATTY	2 cut(s)	690, 741
Asp700I	GAANNNNTTC	2 cut(s)	252, 468
AspS9I	GGNCC	2 cut(s)	177, 759
AvaI	CYCGRG	1 cut(s)	360
BalI	TGGCCA	1 cut(s)	546
BanI	GGYRCC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	367
BbvI	GCAGC	4 cut(s)	99, 102, 330, 614
BccI	CCATC	2 cut(s)	365, 526
BcgI	CGANNNNNNTGC	2 cut(s)	708, 742
BciT130I	CCWGG	2 cut(s)	873, 903
BcoDI	GTCTC	2 cut(s)	107, 665
BfaI	CTAG	2 cut(s)	804, 1048
BglII	AGATCT	2 cut(s)	496, 916
BisI	GCNGC	5 cut(s)	88, 91, 319, 603, 981
BlsI	GCNGC	5 cut(s)	89, 92, 320, 604, 982
Bme1390I	CCNGG	2 cut(s)	873, 903
BmeT110I	CYCGRG	1 cut(s)	360
BmgT120I	GGNCC	2 cut(s)	177, 759
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	2 cut(s)	873, 903
BmrI	ACTGGG	1 cut(s)	1030
BmsI	GCATC	1 cut(s)	424
BmuI	ACTGGG	1 cut(s)	1030
BpmI	CTGGAG	1 cut(s)	924
Bpu10I	CCTNAGC	1 cut(s)	486
BpuEI	CTTGAG	3 cut(s)	89, 647, 905
BsaJI	CCNNGG	2 cut(s)	114, 755
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
Bse1I	ACTGG	2 cut(s)	547, 1036
Bse3DI	GCAATG	1 cut(s)	336
BseBI	CCWGG	2 cut(s)	873, 903
BseDI	CCNNGG	2 cut(s)	114, 755
BseGI	GGATG	2 cut(s)	377, 436
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	4 cut(s)	345, 408, 449, 500
BseNI	ACTGG	2 cut(s)	547, 1036
BseRI	GAGGAG	1 cut(s)	834
BseXI	GCAGC	4 cut(s)	99, 102, 330, 614
BshFI	GGCC	3 cut(s)	179, 546, 761
BshNI	GGYRCC	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	367
BsiHKCI	CYCGRG	1 cut(s)	360
BslI	CCNNNNNNNGG	1 cut(s)	425
BsmAI	GTCTC	2 cut(s)	107, 665
BsnI	GGCC	3 cut(s)	179, 546, 761
BsoBI	CYCGRG	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp143I	GATC	4 cut(s)	284, 374, 496, 916
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	4 cut(s)	575, 946, 980, 1022
BspANI	GGCC	3 cut(s)	179, 546, 761
BspCNI	CTCAG	4 cut(s)	346, 407, 450, 499
BspLI	GGNNCC	1 cut(s)	120
BspPI	GGATC	2 cut(s)	292, 382
BspQI	GCTCTTC	1 cut(s)	214
BspT107I	GGYRCC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	336
BsrI	ACTGG	2 cut(s)	547, 1036
BssECI	CCNNGG	2 cut(s)	114, 755
BssMI	GATC	4 cut(s)	284, 374, 496, 916
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	2 cut(s)	873, 903
Bst4CI	ACNGT	3 cut(s)	158, 552, 589
Bst6I	CTCTTC	3 cut(s)	199, 214, 420
BstDEI	CTNAG	4 cut(s)	354, 394, 458, 486
BstDSI	CCRYGG	2 cut(s)	114, 755
BstEII	GGTNACC	1 cut(s)	702
BstF5I	GGATG	2 cut(s)	377, 436
BstKTI	GATC	4 cut(s)	287, 377, 499, 919
BstMAI	GTCTC	2 cut(s)	107, 665
BstMBI	GATC	4 cut(s)	284, 374, 496, 916
BstMWI	GCNNNNNNNGC	4 cut(s)	84, 116, 638, 868
BstNI	CCWGG	2 cut(s)	873, 903
BstPI	GGTNACC	1 cut(s)	702
BstSCI	CCNGG	2 cut(s)	871, 901
BstV1I	GCAGC	4 cut(s)	99, 102, 330, 614
BstX2I	RGATCY	3 cut(s)	284, 496, 916
BstYI	RGATCY	3 cut(s)	284, 496, 916
BsuRI	GGCC	3 cut(s)	179, 546, 761
BtgI	CCRYGG	2 cut(s)	114, 755
BtsCI	GGATG	2 cut(s)	377, 436
BtsI	GCAGTG	2 cut(s)	739, 977
BtsIMutI	CAGTG	4 cut(s)	180, 739, 774, 977
Cfr13I	GGNCC	2 cut(s)	177, 759
Csp6I	GTAC	1 cut(s)	1009
CviAII	CATG	2 cut(s)	84, 115
CviQI	GTAC	1 cut(s)	1009
DdeI	CTNAG	4 cut(s)	354, 394, 458, 486
DpnI	GATC	4 cut(s)	286, 376, 498, 918
DpnII	GATC	4 cut(s)	284, 374, 496, 916
DraI	TTTAAA	2 cut(s)	34, 268
EaeI	YGGCCR	1 cut(s)	544
Eam1104I	CTCTTC	3 cut(s)	199, 214, 420
EarI	CTCTTC	3 cut(s)	199, 214, 420
Eco130I	CCWWGG	1 cut(s)	114
Eco57I	CTGAAG	3 cut(s)	387, 798, 919
Eco88I	CYCGRG	1 cut(s)	360
Eco91I	GGTNACC	1 cut(s)	702
EcoO65I	GGTNACC	1 cut(s)	702
EcoRII	CCWGG	2 cut(s)	871, 901
EcoT14I	CCWWGG	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	2 cut(s)	87, 118
FaiI	YATR	9 cut(s)	9, 76, 85, 116, 230, 810, 880, 882, 1000
FalI	AAGNNNNNCTT	4 cut(s)	271, 303, 501, 533
FatI	CATG	2 cut(s)	83, 114
FauI	CCCGC	1 cut(s)	568
Fnu4HI	GCNGC	5 cut(s)	88, 91, 319, 603, 981
FokI	GGATG	2 cut(s)	364, 443
Fsp4HI	GCNGC	5 cut(s)	88, 91, 319, 603, 981
FspBI	CTAG	2 cut(s)	804, 1048
GluI	GCNGC	5 cut(s)	88, 91, 319, 603, 981
GsuI	CTGGAG	1 cut(s)	924
HaeIII	GGCC	3 cut(s)	179, 546, 761
Hin1II	CATG	2 cut(s)	87, 118
HinfI	GANTC	3 cut(s)	232, 240, 253
Hpy166II	GTNNAC	2 cut(s)	65, 895
Hpy188I	TCNGA	8 cut(s)	174, 355, 459, 567, 697, 748, 793, 1045
Hpy188III	TCNNGA	1 cut(s)	521
Hpy8I	GTNNAC	2 cut(s)	65, 895
HpyAV	CCTTC	5 cut(s)	29, 411, 550, 639, 936
HpyCH4III	ACNGT	3 cut(s)	158, 552, 589
HpyCH4V	TGCA	4 cut(s)	87, 164, 341, 597
HpyF10VI	GCNNNNNNNGC	4 cut(s)	84, 116, 638, 868
HpyF3I	CTNAG	4 cut(s)	354, 394, 458, 486
Hsp92II	CATG	2 cut(s)	87, 118
Kzo9I	GATC	4 cut(s)	284, 374, 496, 916
LguI	GCTCTTC	1 cut(s)	214
LmnI	GCTCC	2 cut(s)	403, 821
Lsp1109I	GCAGC	4 cut(s)	99, 102, 330, 614
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	2 cut(s)	804, 1048
MaeIII	GTNAC	1 cut(s)	702
MalI	GATC	4 cut(s)	286, 376, 498, 918
MboI	GATC	4 cut(s)	284, 374, 496, 916
MboII	GAAGA	7 cut(s)	186, 231, 279, 407, 476, 506, 593
MfeI	CAATTG	2 cut(s)	49, 708
MflI	RGATCY	3 cut(s)	284, 496, 916
MhlI	GDGCHC	1 cut(s)	367
MlsI	TGGCCA	1 cut(s)	546
MluNI	TGGCCA	1 cut(s)	546
MlyI	GAGTC	1 cut(s)	241
MnlI	CCTC	5 cut(s)	168, 369, 553, 812, 899
Mox20I	TGGCCA	1 cut(s)	546
MroXI	GAANNNNTTC	2 cut(s)	252, 468
MscI	TGGCCA	1 cut(s)	546
MseI	TTAA	5 cut(s)	27, 33, 267, 479, 618
MslI	CAYNNNNRTG	2 cut(s)	51, 779
Msp20I	TGGCCA	1 cut(s)	546
MspR9I	CCNGG	2 cut(s)	873, 903
MunI	CAATTG	2 cut(s)	49, 708
MvaI	CCWGG	2 cut(s)	873, 903
MwoI	GCNNNNNNNGC	4 cut(s)	84, 116, 638, 868
NcoI	CCATGG	1 cut(s)	114
NdeII	GATC	4 cut(s)	284, 374, 496, 916
NlaIII	CATG	2 cut(s)	87, 118
NlaIV	GGNNCC	1 cut(s)	120
OliI	CACNNNNGTG	2 cut(s)	51, 779
PaeR7I	CTCGAG	1 cut(s)	360
PciSI	GCTCTTC	1 cut(s)	214
PcsI	WCGNNNNNNNCGW	1 cut(s)	937
PdmI	GAANNNNTTC	2 cut(s)	252, 468
PfeI	GAWTC	2 cut(s)	240, 253
PflMI	CCANNNNNTGG	1 cut(s)	425
PkrI	GCNGC	5 cut(s)	89, 92, 320, 604, 982
PleI	GAGTC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	240
Psp6I	CCWGG	2 cut(s)	871, 901
PspEI	GGTNACC	1 cut(s)	702
PspGI	CCWGG	2 cut(s)	871, 901
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	2 cut(s)	177, 759
PspXI	VCTCGAGB	1 cut(s)	360
PsuI	RGATCY	3 cut(s)	284, 496, 916
RsaI	GTAC	1 cut(s)	1010
RsaNI	GTAC	1 cut(s)	1009
RseI	CAYNNNNRTG	2 cut(s)	51, 779
SapI	GCTCTTC	1 cut(s)	214
SaqAI	TTAA	5 cut(s)	27, 33, 267, 479, 618
SatI	GCNGC	5 cut(s)	88, 91, 319, 603, 981
Sau3AI	GATC	4 cut(s)	284, 374, 496, 916
Sau96I	GGNCC	2 cut(s)	177, 759
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	2 cut(s)	873, 903
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	7 cut(s)	400, 487, 492, 514, 704, 805, 910
SfaNI	GCATC	1 cut(s)	424
Sfr274I	CTCGAG	1 cut(s)	360
SlaI	CTCGAG	1 cut(s)	360
SmiMI	CAYNNNNRTG	2 cut(s)	51, 779
SmlI	CTYRAG	4 cut(s)	104, 360, 662, 920
SmoI	CTYRAG	4 cut(s)	104, 360, 662, 920
SsiI	CCGC	4 cut(s)	575, 946, 980, 1022
SspMI	CTAG	2 cut(s)	804, 1048
StyD4I	CCNGG	2 cut(s)	871, 901
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	3 cut(s)	158, 552, 589
TaqI	TCGA	5 cut(s)	361, 369, 520, 728, 940
TatI	WGTACW	1 cut(s)	1008
TauI	GCSGC	1 cut(s)	983
TfiI	GAWTC	2 cut(s)	240, 253
Tru1I	TTAA	5 cut(s)	27, 33, 267, 479, 618
Tru9I	TTAA	5 cut(s)	27, 33, 267, 479, 618
TscAI	CASTG	4 cut(s)	187, 739, 781, 977
TseI	GCWGC	4 cut(s)	87, 90, 318, 602
TspDTI	ATGAA	2 cut(s)	72, 186
TspRI	CASTG	4 cut(s)	187, 739, 781, 977
Van91I	CCANNNNNTGG	1 cut(s)	425
XapI	RAATTY	2 cut(s)	690, 741
XhoI	CTCGAG	1 cut(s)	360
XmnI	GAANNNNTTC	2 cut(s)	252, 468
XspI	CTAG	2 cut(s)	804, 1048

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.