Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003738

Physical Location & Seq

Genomic Coordinates Forward (+)

58117778 .. 58129887

Gene Structure 12110 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00326110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCTGAAAGGTTACCCATTGGGACAGCAAGAAGCAGCGACACACGTCCATTAGGCTTTTCTAGTCCTACCCATGACGTTTCTACTACAGCCATTGAGAAAGCAAGCAGTCCATTGACCTTCCATGAACCACATTCAATTGCATCAAATAGCCTGGTGGTTTCTAATGCATCAAGGATTTTGAGTAATCTTGCTTCAAATCCCACTGAAGTGGCAAATTCGGAAGCAACTACTAGGCATAAGAACAGAGGAACAAAAGCTGAAACCACAAATGGGGATGAATGGGTTGAGCAAGATGAGCCTGGTGTATATATTACCCTGGTTTCCTTGCCCACAGGAGTCAAAGATCTCAAGCGTGTCCGCTTCAGTCGAAAGCGGTTCAGTGAGAAACAAGCAGAACAGTGGTGGGCGGCAAATAGAACTAGAGTATATCAGCAGTACAATGTTCCTGTGGTTGAAAAATCTAGTATTCCTATAGGGAAGAGAAGGGTTAGCTCATTGAGCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N BRX_assoc FYVE PH_12 RCC1

Protein Analysis

169

Amino Acids

18.7

Weight (kDa)

9.71

Isoelectric Point (pI)

52.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRX_assoc	PF16627	19 - 83	3e-11	Unstructured region between BRX_N and BRX domain
BRX	PF08381	93 - 147	1.2e-29	Transcription factor regulating root and shoot growth via Pin3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12350 AT5G19420 AT5G19420 AT5G19420
fragaria_vesca	FvH4_7g02960 FvH4_7g02960 FvH4_7g02960 FvH4_7g02960
malus_domestica	MD02G1288400.v1.1 MD07G1038100.v1.1 MD07G1038400.v1.1 MD13G1037300.v1.1
prunus_persica	Prupe.2G034600_v2.0.a1 Prupe.2G034600_v2.0.a1 Prupe.2G034600_v2.0.a1
pyrus_communis	pycom02g24410 pycom05g01140 pycom07g02640 pycom07g02670 pycom16g06500
rosa_chinensis	RchiOBHm_Chr1g0323931
rosa_laevigata	RLG00000030242
rosa_multiflora	Rmu_co8261369.1_g000001 Rmu_sc0001449.1_g000001 Rmu_sc0011010.1_g000012 Rmu_sc0012343.1_g000006 Rmu_sc0012343.1_g000007
rosa_roxburghii	Rroxscaffold_4G00326110
rosa_rugosa	Rorug01G0040600
rosa_samantha	Rh1AG058500 Rh1BG049600 Rh1CG060400 Rh1DG064400
rosa_wichuraiana	Rw0G011380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	361, 376, 410
AcsI	RAATTY	1 cut(s)	217
AcuI	CTGAAG	2 cut(s)	228, 349
AfaI	GTAC	1 cut(s)	440
AfiI	CCNNNNNNNGG	1 cut(s)	273
AflIII	ACRYGT	1 cut(s)	44
AgsI	TTSAA	3 cut(s)	138, 198, 458
AjiI	CACGTC	1 cut(s)	47
AjnI	CCWGG	3 cut(s)	153, 301, 318
AleI	CACNNNNGTG	1 cut(s)	209
AluBI	AGCT	3 cut(s)	260, 495, 504
AluI	AGCT	3 cut(s)	260, 495, 504
ApeKI	GCWGC	2 cut(s)	36, 504
ApoI	RAATTY	1 cut(s)	217
BarI	GAAGNNNNNNTAC	2 cut(s)	178, 210
BbvI	GCAGC	2 cut(s)	48, 491
BciT130I	CCWGG	3 cut(s)	155, 303, 320
BfaI	CTAG	4 cut(s)	63, 234, 423, 465
BfmI	CTRYAG	2 cut(s)	87, 474
BglII	AGATCT	1 cut(s)	346
BisI	GCNGC	3 cut(s)	37, 411, 505
BlsI	GCNGC	3 cut(s)	38, 412, 506
Bme1390I	CCNGG	3 cut(s)	155, 303, 320
BmgBI	CACGTC	1 cut(s)	47
BmrFI	CCNGG	3 cut(s)	155, 303, 320
BmsI	GCATC	2 cut(s)	152, 179
BoxI	GACNNNNGTC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
BseBI	CCWGG	3 cut(s)	155, 303, 320
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	273
BseXI	GCAGC	2 cut(s)	48, 491
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	37
Bsp143I	GATC	1 cut(s)	346
BspACI	CCGC	3 cut(s)	361, 376, 410
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	1 cut(s)	346
Bst2UI	CCWGG	3 cut(s)	155, 303, 320
Bst4CI	ACNGT	1 cut(s)	402
Bst6I	CTCTTC	1 cut(s)	476
BstC8I	GCNNGC	1 cut(s)	106
BstEII	GGTNACC	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	346
BstMWI	GCNNNNNNNGC	2 cut(s)	298, 501
BstNI	CCWGG	3 cut(s)	155, 303, 320
BstPAI	GACNNNNGTC	1 cut(s)	45
BstPI	GGTNACC	1 cut(s)	12
BstSCI	CCNGG	3 cut(s)	153, 301, 318
BstSFI	CTRYAG	2 cut(s)	87, 474
BstV1I	GCAGC	2 cut(s)	48, 491
BstX2I	RGATCY	1 cut(s)	346
BstXI	CCANNNNNNTGG	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	346
BtrI	CACGTC	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	3 cut(s)	204, 388, 407
Cac8I	GCNNGC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	439
CviAII	CATG	2 cut(s)	74, 125
CviJI	RGCY	8 cut(s)	5, 57, 92, 153, 260, 301, 495, 504
CviKI_1	RGCY	8 cut(s)	5, 57, 92, 153, 260, 301, 495, 504
CviQI	GTAC	1 cut(s)	439
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	476
EarI	CTCTTC	1 cut(s)	476
Eco57I	CTGAAG	2 cut(s)	228, 349
Eco91I	GGTNACC	1 cut(s)	12
EcoO65I	GGTNACC	1 cut(s)	12
EcoRII	CCWGG	3 cut(s)	153, 301, 318
EcoT22I	ATGCAT	1 cut(s)	172
FaeI	CATG	2 cut(s)	77, 128
FaiI	YATR	7 cut(s)	75, 126, 240, 310, 312, 430, 476
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	2 cut(s)	73, 124
Fnu4HI	GCNGC	3 cut(s)	37, 411, 505
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	3 cut(s)	37, 411, 505
FspBI	CTAG	4 cut(s)	63, 234, 423, 465
GluI	GCNGC	3 cut(s)	37, 411, 505
Hin1II	CATG	2 cut(s)	77, 128
HinfI	GANTC	1 cut(s)	339
Hpy188I	TCNGA	1 cut(s)	223
HpyAV	CCTTC	2 cut(s)	130, 480
HpyCH4III	ACNGT	1 cut(s)	402
HpyCH4IV	ACGT	2 cut(s)	46, 78
HpyCH4V	TGCA	2 cut(s)	143, 170
HpyF10VI	GCNNNNNNNGC	2 cut(s)	298, 501
HpySE526I	ACGT	2 cut(s)	46, 78
Hsp92II	CATG	2 cut(s)	77, 128
Kzo9I	GATC	1 cut(s)	346
LpnPI	CCDG	8 cut(s)	140, 167, 288, 305, 315, 321, 332, 462
Lsp1109I	GCAGC	2 cut(s)	48, 491
LweI	GCATC	2 cut(s)	152, 179
MaeI	CTAG	4 cut(s)	63, 234, 423, 465
MaeII	ACGT	2 cut(s)	46, 78
MaeIII	GTNAC	1 cut(s)	12
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MboII	GAAGA	1 cut(s)	493
MfeI	CAATTG	1 cut(s)	138
MflI	RGATCY	1 cut(s)	346
MluCI	AATT	2 cut(s)	138, 217
MlyI	GAGTC	1 cut(s)	348
MnlI	CCTC	1 cut(s)	242
Mph1103I	ATGCAT	1 cut(s)	172
MslI	CAYNNNNRTG	1 cut(s)	209
MspR9I	CCNGG	3 cut(s)	155, 303, 320
MunI	CAATTG	1 cut(s)	138
MvaI	CCWGG	3 cut(s)	155, 303, 320
MwoI	GCNNNNNNNGC	2 cut(s)	298, 501
NdeII	GATC	1 cut(s)	346
NlaIII	CATG	2 cut(s)	77, 128
NsiI	ATGCAT	1 cut(s)	172
OliI	CACNNNNGTG	1 cut(s)	209
PkrI	GCNGC	3 cut(s)	38, 412, 506
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PshAI	GACNNNNGTC	1 cut(s)	45
Psp6I	CCWGG	3 cut(s)	153, 301, 318
PspEI	GGTNACC	1 cut(s)	12
PspGI	CCWGG	3 cut(s)	153, 301, 318
PsuI	RGATCY	1 cut(s)	346
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
RseI	CAYNNNNRTG	1 cut(s)	209
SatI	GCNGC	3 cut(s)	37, 411, 505
Sau3AI	GATC	1 cut(s)	346
SchI	GAGTC	1 cut(s)	348
ScrFI	CCNGG	3 cut(s)	155, 303, 320
SetI	ASST	7 cut(s)	14, 49, 81, 122, 262, 497, 506
SfaNI	GCATC	2 cut(s)	152, 179
SfcI	CTRYAG	2 cut(s)	87, 474
SmiMI	CAYNNNNRTG	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	2 cut(s)	138, 217
SsiI	CCGC	3 cut(s)	361, 376, 410
SspMI	CTAG	4 cut(s)	63, 234, 423, 465
StyD4I	CCNGG	3 cut(s)	153, 301, 318
TaaI	ACNGT	1 cut(s)	402
TaiI	ACGT	2 cut(s)	49, 81
TaqI	TCGA	1 cut(s)	370
TasI	AATT	2 cut(s)	138, 217
TatI	WGTACW	1 cut(s)	438
TauI	GCSGC	1 cut(s)	413
TscAI	CASTG	3 cut(s)	211, 388, 407
TseI	GCWGC	2 cut(s)	36, 504
TspDTI	ATGAA	2 cut(s)	141, 294
TspRI	CASTG	3 cut(s)	211, 388, 407
XapI	RAATTY	1 cut(s)	217
XspI	CTAG	4 cut(s)	63, 234, 423, 465
Zsp2I	ATGCAT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.